RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 NDUFA7O95182 113 aa16.18■□□□□ 0.18
CLN3-209ENST00000561689 OR11H1Q8NG94 326 aa16.18■□□□□ 0.18
CLN3-209ENST00000561689 KLF12Q9Y4X4 402 aa16.18■□□□□ 0.18
CLN3-209ENST00000561689 TMEM213A2RRL7 107 aa16.18■□□□□ 0.18
CLN3-209ENST00000561689 IGLV2-8P01709 118 aa16.18■□□□□ 0.18
CLN3-209ENST00000561689 SLURP1P55000 103 aa16.18■□□□□ 0.18
CLN3-209ENST00000561689 SNRPEP62304 92 aaKnown RBP16.18■□□□□ 0.18
CLN3-209ENST00000561689 OR5I1Q13606 314 aa16.18■□□□□ 0.18
CLN3-209ENST00000561689 BAGE2Q86Y30 109 aa16.18■□□□□ 0.18
CLN3-209ENST00000561689 LY96Q9Y6Y9 160 aa16.18■□□□□ 0.18
CLN3-209ENST00000561689 A0A1W2PRX2 142 aa16.17■□□□□ 0.18
CLN3-209ENST00000561689 DIRC3C9JPN6 131 aa16.17■□□□□ 0.18
CLN3-209ENST00000561689 RPL11P62913 178 aaKnown RBP16.17■□□□□ 0.18
CLN3-209ENST00000561689 C8orf86Q6ZUL3 223 aa16.17■□□□□ 0.18
CLN3-209ENST00000561689 RNF182Q8N6D2 247 aa16.17■□□□□ 0.18
CLN3-209ENST00000561689 RNF114Q9Y508 228 aa16.17■□□□□ 0.18
CLN3-209ENST00000561689 LINC01619G3V211 115 aa16.17■□□□□ 0.18
CLN3-209ENST00000561689 RPS10P46783 165 aaKnown RBP16.17■□□□□ 0.18
CLN3-209ENST00000561689 REC114Q7Z4M0 266 aa16.17■□□□□ 0.18
CLN3-209ENST00000561689 OR1N2Q8NGR9 330 aa16.17■□□□□ 0.18
CLN3-209ENST00000561689 ZNF705FA8MVS1 300 aaPredicted RBP16.16■□□□□ 0.18
CLN3-209ENST00000561689 MGST1P10620 155 aaKnown RBP16.16■□□□□ 0.18
CLN3-209ENST00000561689 CSN1S1P47710 185 aa16.16■□□□□ 0.18
CLN3-209ENST00000561689 KLF5Q13887 457 aaPredicted RBP16.16■□□□□ 0.18
CLN3-209ENST00000561689 DPF1Q92782 380 aa16.16■□□□□ 0.18
CLN3-209ENST00000561689 SFRP2Q96HF1 295 aa16.16■□□□□ 0.18
CLN3-209ENST00000561689 FMC1Q96HJ9 113 aa16.16■□□□□ 0.18
CLN3-209ENST00000561689 CITED2Q99967 270 aaPredicted RBP16.16■□□□□ 0.18
CLN3-209ENST00000561689 IGKV3-7A0A075B6H7 116 aa16.15■□□□□ 0.18
CLN3-209ENST00000561689 LGALS9O00182 355 aa16.15■□□□□ 0.18
CLN3-209ENST00000561689 IGLV2-11P01706 119 aa16.15■□□□□ 0.18
CLN3-209ENST00000561689 AKR1D1P51857 326 aa16.15■□□□□ 0.18
CLN3-209ENST00000561689 C1QL4Q86Z23 238 aa16.15■□□□□ 0.18
CLN3-209ENST00000561689 TMEM242Q9NWH2 141 aa16.15■□□□□ 0.18
CLN3-209ENST00000561689 TRAV8-2A0A0B4J237 113 aa16.15■□□□□ 0.18
CLN3-209ENST00000561689 SLC50A1Q9BRV3 221 aa16.15■□□□□ 0.18
CLN3-209ENST00000561689 CTDSP1Q9GZU7 261 aa16.15■□□□□ 0.18
CLN3-209ENST00000561689 C5orf52A6NGY3 159 aa16.14■□□□□ 0.17
CLN3-209ENST00000561689 A8MWP6 167 aa16.14■□□□□ 0.17
CLN3-209ENST00000561689 S100A9P06702 114 aaKnown RBP16.14■□□□□ 0.17
CLN3-209ENST00000561689 MEOX2P50222 304 aa16.14■□□□□ 0.17
CLN3-209ENST00000561689 LCN12Q6JVE5 192 aa16.14■□□□□ 0.17
CLN3-209ENST00000561689 PRNTQ86SH4 94 aa16.14■□□□□ 0.17
CLN3-209ENST00000561689 PRELID1Q9Y255 219 aa16.14■□□□□ 0.17
CLN3-209ENST00000561689 H7BYZ3 331 aa16.13■□□□□ 0.17
CLN3-209ENST00000561689 PROK1P58294 105 aa16.13■□□□□ 0.17
CLN3-209ENST00000561689 ASCL2Q99929 193 aa16.13■□□□□ 0.17
CLN3-209ENST00000561689 IGKV2-40A0A087WW87 121 aaPredicted RBP16.13■□□□□ 0.17
CLN3-209ENST00000561689 K7EQM0 130 aa16.13■□□□□ 0.17
CLN3-209ENST00000561689 GCGP01275 180 aa16.13■□□□□ 0.17
CLN3-209ENST00000561689 LTAP01374 205 aa16.13■□□□□ 0.17
CLN3-209ENST00000561689 IGKV2D-40P01614 121 aaPredicted RBP16.13■□□□□ 0.17
CLN3-209ENST00000561689 ANAPC16Q96DE5 110 aa16.13■□□□□ 0.17
CLN3-209ENST00000561689 C16orf92Q96LL3 132 aa16.13■□□□□ 0.17
CLN3-209ENST00000561689 TCF24Q7RTU0 167 aa16.12■□□□□ 0.17
CLN3-209ENST00000561689 Q86TA4 180 aa16.12■□□□□ 0.17
CLN3-209ENST00000561689 LINC00518Q8N0U6 118 aa16.12■□□□□ 0.17
CLN3-209ENST00000561689 TMEM75Q8N9X5 138 aa16.12■□□□□ 0.17
CLN3-209ENST00000561689 WFDC12Q8WWY7 111 aa16.12■□□□□ 0.17
CLN3-209ENST00000561689 RNASE7Q9H1E1 156 aaKnown RBP16.12■□□□□ 0.17
CLN3-209ENST00000561689 C2orf70A6NJV1 201 aa16.11■□□□□ 0.17
CLN3-209ENST00000561689 PRAC2D3DTV9 90 aa16.11■□□□□ 0.17
CLN3-209ENST00000561689 CBLN1P23435 193 aa16.11■□□□□ 0.17
CLN3-209ENST00000561689 ERVFC1-1P60608 527 aa16.11■□□□□ 0.17
CLN3-209ENST00000561689 PSG3Q16557 428 aa16.11■□□□□ 0.17
CLN3-209ENST00000561689 RAX2Q96IS3 184 aa16.11■□□□□ 0.17
CLN3-209ENST00000561689 NRN1Q9NPD7 142 aa16.11■□□□□ 0.17
CLN3-209ENST00000561689 TSSC4Q9Y5U2 329 aaPredicted RBP16.11■□□□□ 0.17
CLN3-209ENST00000561689 NIPBLQ6KC79 2804 aaeCLIP16.11■□□□□ 0.17
CLN3-209ENST00000561689 S100A6P06703 90 aa16.11■□□□□ 0.17
CLN3-209ENST00000561689 OR10G8Q8NGN5 311 aa16.11■□□□□ 0.17
CLN3-209ENST00000561689 DLX4Q92988 240 aaPredicted RBP16.11■□□□□ 0.17
CLN3-209ENST00000561689 PSG8Q9UQ74 426 aa16.11■□□□□ 0.17
CLN3-209ENST00000561689 BMI1P35226 326 aa16.1■□□□□ 0.17
CLN3-209ENST00000561689 PRR27Q6MZM9 219 aa16.1■□□□□ 0.17
CLN3-209ENST00000561689 GBGT1Q8N5D6 347 aa16.1■□□□□ 0.17
CLN3-209ENST00000561689 FAM210BQ96KR6 192 aa16.1■□□□□ 0.17
CLN3-209ENST00000561689 MLST8Q9BVC4 326 aa16.1■□□□□ 0.17
CLN3-209ENST00000561689 SOCS3O14543 225 aa16.09■□□□□ 0.17
CLN3-209ENST00000561689 VGLL1Q99990 258 aa16.09■□□□□ 0.17
CLN3-209ENST00000561689 C2CD3Q4AC94 2353 aa16.09■□□□□ 0.17
CLN3-209ENST00000561689 ARL6IP6Q8N6S5 226 aa16.09■□□□□ 0.17
CLN3-209ENST00000561689 C20orf173Q96LM9 149 aa16.09■□□□□ 0.17
CLN3-209ENST00000561689 SERTM2A0A1B0GWG4 89 aa16.08■□□□□ 0.16
CLN3-209ENST00000561689 UBE2CO00762 179 aa16.08■□□□□ 0.16
CLN3-209ENST00000561689 PPP1R2P9O14990 202 aa16.08■□□□□ 0.16
CLN3-209ENST00000561689 PFN1P07737 140 aaKnown RBP16.08■□□□□ 0.16
CLN3-209ENST00000561689 FABP9Q0Z7S8 132 aa16.08■□□□□ 0.16
CLN3-209ENST00000561689 ADAMTSL5Q6ZMM2 481 aa16.08■□□□□ 0.16
CLN3-209ENST00000561689 TRBV6-1A0A0K0K1D8 114 aa16.07■□□□□ 0.16
CLN3-209ENST00000561689 TRGC2P03986 189 aa16.07■□□□□ 0.16
CLN3-209ENST00000561689 OR9G4Q8NGQ1 327 aa16.07■□□□□ 0.16
CLN3-209ENST00000561689 CCL24O00175 119 aa16.07■□□□□ 0.16
CLN3-209ENST00000561689 IBA57Q5T440 356 aaKnown RBP16.07■□□□□ 0.16
CLN3-209ENST00000561689 WFDC3Q8IUB2 231 aa16.07■□□□□ 0.16
CLN3-209ENST00000561689 TMEM183AQ8IXX5 376 aa16.07■□□□□ 0.16
CLN3-209ENST00000561689 SMIM12Q96EX1 92 aa16.07■□□□□ 0.16
CLN3-209ENST00000561689 TRBV24-1A0A075B6N3 115 aa16.06■□□□□ 0.16
CLN3-209ENST00000561689 ERCC8Q13216 396 aa16.06■□□□□ 0.16
CLN3-209ENST00000561689 Q8TAT8 98 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 147 ms