RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 C2orf70A6NJV1 201 aa1.38□□□□□ -2.19
SCFD1-221ENST00000556534 GADD45GO95257 159 aa1.38□□□□□ -2.19
SCFD1-221ENST00000556534 IFNA21P01568 189 aa1.38□□□□□ -2.19
SCFD1-221ENST00000556534 APOA2P02652 100 aa1.38□□□□□ -2.19
SCFD1-221ENST00000556534 GPX1P07203 203 aa1.38□□□□□ -2.19
SCFD1-221ENST00000556534 CXCL1P09341 107 aa1.38□□□□□ -2.19
SCFD1-221ENST00000556534 OGNP20774 298 aaKnown RBP1.38□□□□□ -2.19
SCFD1-221ENST00000556534 TFAMQ00059 246 aaKnown RBP1.38□□□□□ -2.19
SCFD1-221ENST00000556534 FKBP1CQ5VVH2 108 aa1.38□□□□□ -2.19
SCFD1-221ENST00000556534 NHP2Q9NX24 153 aaKnown RBP1.38□□□□□ -2.19
SCFD1-221ENST00000556534 HS3ST2Q9Y278 367 aa1.38□□□□□ -2.19
SCFD1-221ENST00000556534 NDUFAF1Q9Y375 327 aa1.38□□□□□ -2.19
SCFD1-221ENST00000556534 ASB4Q9Y574 426 aa1.38□□□□□ -2.19
SCFD1-221ENST00000556534 NEXMIFQ5QGS0 1516 aa1.38□□□□□ -2.19
SCFD1-221ENST00000556534 TECPR2O15040 1411 aa1.38□□□□□ -2.19
SCFD1-221ENST00000556534 FAM208BQ5VWN6 2430 aa1.38□□□□□ -2.19
SCFD1-221ENST00000556534 VIRMAQ69YN4 1812 aaKnown RBP1.38□□□□□ -2.19
SCFD1-221ENST00000556534 SAMD9LQ8IVG5 1584 aa1.38□□□□□ -2.19
SCFD1-221ENST00000556534 ABCA3Q99758 1704 aa1.37□□□□□ -2.19
SCFD1-221ENST00000556534 HELZ2Q9BYK8 2649 aaKnown RBP1.37□□□□□ -2.19
SCFD1-221ENST00000556534 ZNF518AQ6AHZ1 1483 aa1.37□□□□□ -2.19
SCFD1-221ENST00000556534 SCN3AQ9NY46 2000 aa1.37□□□□□ -2.19
SCFD1-221ENST00000556534 ANKRD30AQ9BXX3 1397 aa1.37□□□□□ -2.19
SCFD1-221ENST00000556534 LAMB4A4D0S4 1761 aa1.37□□□□□ -2.19
SCFD1-221ENST00000556534 LAMB2P55268 1798 aa1.37□□□□□ -2.19
SCFD1-221ENST00000556534 TOP2AP11388 1531 aaKnown RBP1.37□□□□□ -2.19
SCFD1-221ENST00000556534 ITSN2Q9NZM3 1697 aa1.37□□□□□ -2.19
SCFD1-221ENST00000556534 ODAMA1E959 279 aa1.37□□□□□ -2.19
SCFD1-221ENST00000556534 FUOMA2VDF0 154 aa1.37□□□□□ -2.19
SCFD1-221ENST00000556534 B4DSR2 109 aa1.37□□□□□ -2.19
SCFD1-221ENST00000556534 TIMM17BO60830 172 aa1.37□□□□□ -2.19
SCFD1-221ENST00000556534 LYZL6O75951 148 aa1.37□□□□□ -2.19
SCFD1-221ENST00000556534 UBL3O95164 117 aa1.37□□□□□ -2.19
SCFD1-221ENST00000556534 BAALC-AS2P0C853 105 aa1.37□□□□□ -2.19
SCFD1-221ENST00000556534 RNASE3P12724 160 aaKnown RBP1.37□□□□□ -2.19
SCFD1-221ENST00000556534 ARPP19P56211 112 aa1.37□□□□□ -2.19
SCFD1-221ENST00000556534 DEFB113Q30KQ7 82 aa1.37□□□□□ -2.19
SCFD1-221ENST00000556534 PATE2Q6UY27 113 aa1.37□□□□□ -2.19
SCFD1-221ENST00000556534 PHF13Q86YI8 300 aaPredicted RBP1.37□□□□□ -2.19
SCFD1-221ENST00000556534 Q8N2B8 174 aa1.37□□□□□ -2.19
SCFD1-221ENST00000556534 LINC00311Q8N616 119 aa1.37□□□□□ -2.19
SCFD1-221ENST00000556534 DEFB123Q8N688 67 aa1.37□□□□□ -2.19
SCFD1-221ENST00000556534 DYDC1Q8WWB3 177 aa1.37□□□□□ -2.19
SCFD1-221ENST00000556534 RMND5BQ96G75 393 aaPredicted RBP1.37□□□□□ -2.19
SCFD1-221ENST00000556534 ZC2HC1AQ96GY0 325 aa1.37□□□□□ -2.19
SCFD1-221ENST00000556534 TEX37Q96LM6 180 aa1.37□□□□□ -2.19
SCFD1-221ENST00000556534 RTL8AQ9BWD3 113 aa1.37□□□□□ -2.19
SCFD1-221ENST00000556534 NPCDR1Q9BY65 106 aa1.37□□□□□ -2.19
SCFD1-221ENST00000556534 WDR87Q6ZQQ6 2873 aa1.37□□□□□ -2.19
SCFD1-221ENST00000556534 NCOA2Q15596 1464 aa1.37□□□□□ -2.19
SCFD1-221ENST00000556534 RELNP78509 3460 aa1.36□□□□□ -2.19
SCFD1-221ENST00000556534 TEX15Q9BXT5 2789 aa1.36□□□□□ -2.19
SCFD1-221ENST00000556534 PIK3C2AO00443 1686 aa1.36□□□□□ -2.19
SCFD1-221ENST00000556534 FRYQ5TBA9 3013 aa1.36□□□□□ -2.19
SCFD1-221ENST00000556534 TRGV2A0A075B6R0 118 aa1.36□□□□□ -2.19
SCFD1-221ENST00000556534 GNG14A0A1W2PPG7 69 aa1.36□□□□□ -2.19
SCFD1-221ENST00000556534 TLCD2A6NGC4 264 aa1.36□□□□□ -2.19
SCFD1-221ENST00000556534 H7BYZ3 331 aa1.36□□□□□ -2.19
SCFD1-221ENST00000556534 HLA-EP13747 358 aa1.36□□□□□ -2.19
SCFD1-221ENST00000556534 PDE6HQ13956 83 aa1.36□□□□□ -2.19
SCFD1-221ENST00000556534 MSMO1Q15800 293 aa1.36□□□□□ -2.19
SCFD1-221ENST00000556534 DEFB115Q30KQ5 88 aa1.36□□□□□ -2.19
SCFD1-221ENST00000556534 C10orf55Q5SWW7 151 aa1.36□□□□□ -2.19
SCFD1-221ENST00000556534 C1orf140Q5VVS0 124 aa1.36□□□□□ -2.19
SCFD1-221ENST00000556534 TAC4Q86UU9 113 aa1.36□□□□□ -2.19
SCFD1-221ENST00000556534 LINC00471Q8N535 108 aa1.36□□□□□ -2.19
SCFD1-221ENST00000556534 SREK1IP1Q8N9Q2 155 aaPredicted RBP1.36□□□□□ -2.19
SCFD1-221ENST00000556534 C15orf53Q8NAA6 179 aa1.36□□□□□ -2.19
SCFD1-221ENST00000556534 LINC00301Q8NCQ3 95 aa1.36□□□□□ -2.19
SCFD1-221ENST00000556534 SLC25A21Q9BQT8 299 aaPredicted RBP1.36□□□□□ -2.19
SCFD1-221ENST00000556534 POPDC3Q9HBV1 291 aa1.36□□□□□ -2.19
SCFD1-221ENST00000556534 MED11Q9P086 117 aa1.36□□□□□ -2.19
SCFD1-221ENST00000556534 RNF11Q9Y3C5 154 aa1.36□□□□□ -2.19
SCFD1-221ENST00000556534 MYLKQ15746 1914 aa1.36□□□□□ -2.19
SCFD1-221ENST00000556534 PREX2Q70Z35 1606 aa1.36□□□□□ -2.19
SCFD1-221ENST00000556534 EXPH5Q8NEV8 1989 aa1.36□□□□□ -2.19
SCFD1-221ENST00000556534 TNRC6BQ9UPQ9 1833 aaKnown RBP1.36□□□□□ -2.19
SCFD1-221ENST00000556534 CLTCQ00610 1675 aaKnown RBP1.35□□□□□ -2.19
SCFD1-221ENST00000556534 SLIT1O75093 1534 aa1.35□□□□□ -2.19
SCFD1-221ENST00000556534 UGGT2Q9NYU1 1516 aa1.35□□□□□ -2.19
SCFD1-221ENST00000556534 NCOR2Q9Y618 2525 aa1.35□□□□□ -2.19
SCFD1-221ENST00000556534 COL24A1Q17RW2 1714 aa1.35□□□□□ -2.19
SCFD1-221ENST00000556534 SIPA1L2Q9P2F8 1722 aaPredicted RBP1.35□□□□□ -2.19
SCFD1-221ENST00000556534 HECTD1Q9ULT8 2610 aa1.35□□□□□ -2.19
SCFD1-221ENST00000556534 TRAV12-1A0A0B4J245 112 aa1.35□□□□□ -2.19
SCFD1-221ENST00000556534 K7ERJ3 54 aa1.35□□□□□ -2.19
SCFD1-221ENST00000556534 ZZEF1O43149 2961 aa1.35□□□□□ -2.19
SCFD1-221ENST00000556534 OR1I1O60431 355 aa1.35□□□□□ -2.19
SCFD1-221ENST00000556534 IFNA14P01570 189 aa1.35□□□□□ -2.19
SCFD1-221ENST00000556534 NBEAP1P0C6P0 100 aa1.35□□□□□ -2.19
SCFD1-221ENST00000556534 ROMO1P60602 79 aa1.35□□□□□ -2.19
SCFD1-221ENST00000556534 AKAP14Q86UN6 197 aa1.35□□□□□ -2.19
SCFD1-221ENST00000556534 ZNF563Q8TA94 476 aa1.35□□□□□ -2.19
SCFD1-221ENST00000556534 OTORQ9NRC9 128 aa1.35□□□□□ -2.19
SCFD1-221ENST00000556534 CELSR3Q9NYQ7 3312 aa1.35□□□□□ -2.19
SCFD1-221ENST00000556534 LAMC1P11047 1609 aa1.35□□□□□ -2.19
SCFD1-221ENST00000556534 ABCA6Q8N139 1617 aa1.35□□□□□ -2.19
SCFD1-221ENST00000556534 CASP8AP2Q9UKL3 1982 aa1.35□□□□□ -2.19
SCFD1-221ENST00000556534 NRXN1Q9ULB1 1477 aa1.35□□□□□ -2.19
SCFD1-221ENST00000556534 ZFYVE26Q68DK2 2539 aa1.35□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 120.1 ms