RNA–Protein interactions for RNA: ENST00000555759.1

SYNE3-204, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 2

Gene SYNE3, Length 5,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-204ENST00000555759 SPXQ9BT56 116 aa14.13□□□□□ -0.15
SYNE3-204ENST00000555759 TP53TG1Q9Y2A0 90 aa14.13□□□□□ -0.15
SYNE3-204ENST00000555759 SOCS3O14543 225 aa14.13□□□□□ -0.15
SYNE3-204ENST00000555759 PLA2G2EQ9NZK7 142 aa14.13□□□□□ -0.15
SYNE3-204ENST00000555759 PLXNA3P51805 1871 aa14.13□□□□□ -0.15
SYNE3-204ENST00000555759 DOCK3Q8IZD9 2030 aa14.13□□□□□ -0.15
SYNE3-204ENST00000555759 VWC2LB2RUY7 222 aa14.13□□□□□ -0.15
SYNE3-204ENST00000555759 TRAV41A0A0B4J266 112 aa14.12□□□□□ -0.15
SYNE3-204ENST00000555759 NDUFB8O95169 186 aa14.12□□□□□ -0.15
SYNE3-204ENST00000555759 TRPT1Q86TN4 253 aaKnown RBP14.12□□□□□ -0.15
SYNE3-204ENST00000555759 B5MCH6 92 aa14.12□□□□□ -0.15
SYNE3-204ENST00000555759 NUPR1O60356 82 aa14.12□□□□□ -0.15
SYNE3-204ENST00000555759 NPYP01303 97 aa14.12□□□□□ -0.15
SYNE3-204ENST00000555759 ICE1Q9Y2F5 2266 aa14.12□□□□□ -0.15
SYNE3-204ENST00000555759 BUB1B-PAK6H3BSN5 160 aa14.12□□□□□ -0.15
SYNE3-204ENST00000555759 ATP5J2P56134 94 aa14.12□□□□□ -0.15
SYNE3-204ENST00000555759 AMTNQ6UX39 209 aa14.11□□□□□ -0.15
SYNE3-204ENST00000555759 C8orf49Q96NF6 230 aa14.11□□□□□ -0.15
SYNE3-204ENST00000555759 SCRT2Q9NQ03 307 aa14.11□□□□□ -0.15
SYNE3-204ENST00000555759 SHISA9B4DS77 424 aa14.11□□□□□ -0.15
SYNE3-204ENST00000555759 LAMTOR3Q9UHA4 124 aa14.11□□□□□ -0.15
SYNE3-204ENST00000555759 A0A087WX48 190 aa14.11□□□□□ -0.15
SYNE3-204ENST00000555759 SRD5A1P18405 259 aa14.11□□□□□ -0.15
SYNE3-204ENST00000555759 PRIMA1Q86XR5 153 aa14.11□□□□□ -0.15
SYNE3-204ENST00000555759 LTAP01374 205 aa14.11□□□□□ -0.15
SYNE3-204ENST00000555759 TDRG1Q3Y452 100 aa14.11□□□□□ -0.15
SYNE3-204ENST00000555759 JPT2Q9H910 190 aa14.11□□□□□ -0.15
SYNE3-204ENST00000555759 IGHG4P01861 327 aa14.1□□□□□ -0.15
SYNE3-204ENST00000555759 IGLC1P0CG04 106 aa14.1□□□□□ -0.15
SYNE3-204ENST00000555759 RPL36AP83881 106 aaKnown RBP14.1□□□□□ -0.15
SYNE3-204ENST00000555759 RPL36ALQ969Q0 106 aaKnown RBP14.1□□□□□ -0.15
SYNE3-204ENST00000555759 FXYD5Q96DB9 178 aa14.1□□□□□ -0.15
SYNE3-204ENST00000555759 COLQQ9Y215 455 aaPredicted RBP14.1□□□□□ -0.15
SYNE3-204ENST00000555759 PRB3Q04118 309 aaPredicted RBP14.1□□□□□ -0.15
SYNE3-204ENST00000555759 LINC01545Q5VT33 79 aa14.1□□□□□ -0.15
SYNE3-204ENST00000555759 PRR25Q96S07 402 aa14.1□□□□□ -0.15
SYNE3-204ENST00000555759 SS18L2Q9UHA2 77 aa14.1□□□□□ -0.15
SYNE3-204ENST00000555759 SAP30O75446 220 aa14.1□□□□□ -0.15
SYNE3-204ENST00000555759 C15orf53Q8NAA6 179 aa14.1□□□□□ -0.15
SYNE3-204ENST00000555759 THAP8Q8NA92 274 aa14.09□□□□□ -0.15
SYNE3-204ENST00000555759 XIRP1Q702N8 1843 aaKnown RBP14.09□□□□□ -0.15
SYNE3-204ENST00000555759 NTN3O00634 580 aaPredicted RBP14.09□□□□□ -0.15
SYNE3-204ENST00000555759 ZNF415Q09FC8 603 aa14.09□□□□□ -0.15
SYNE3-204ENST00000555759 STHQ8IWL8 128 aa14.09□□□□□ -0.15
SYNE3-204ENST00000555759 DKK2Q9UBU2 259 aa14.09□□□□□ -0.15
SYNE3-204ENST00000555759 TAX1BP3O14907 124 aa14.08□□□□□ -0.15
SYNE3-204ENST00000555759 Q8NFD4 153 aa14.08□□□□□ -0.15
SYNE3-204ENST00000555759 SMIM2Q9BVW6 85 aa14.08□□□□□ -0.15
SYNE3-204ENST00000555759 ERCC8Q13216 396 aa14.08□□□□□ -0.16
SYNE3-204ENST00000555759 FOXI2Q6ZQN5 318 aa14.08□□□□□ -0.16
SYNE3-204ENST00000555759 ANKRD29Q8N6D5 301 aa14.08□□□□□ -0.16
SYNE3-204ENST00000555759 IGLL5B9A064 214 aa14.08□□□□□ -0.16
SYNE3-204ENST00000555759 K7EM74 188 aa14.08□□□□□ -0.16
SYNE3-204ENST00000555759 CHCHD5Q9BSY4 110 aa14.08□□□□□ -0.16
SYNE3-204ENST00000555759 MYLKQ15746 1914 aa14.08□□□□□ -0.16
SYNE3-204ENST00000555759 TSC2P49815 1807 aa14.07□□□□□ -0.16
SYNE3-204ENST00000555759 K7EMI3 77 aa14.07□□□□□ -0.16
SYNE3-204ENST00000555759 IGFL4Q6B9Z1 124 aa14.07□□□□□ -0.16
SYNE3-204ENST00000555759 M0R1W7 72 aa14.07□□□□□ -0.16
SYNE3-204ENST00000555759 ZNF833PQ6ZTB9 187 aa14.07□□□□□ -0.16
SYNE3-204ENST00000555759 C20orf78Q9BR46 151 aa14.07□□□□□ -0.16
SYNE3-204ENST00000555759 TRGV4A0A0C4DH28 118 aa14.07□□□□□ -0.16
SYNE3-204ENST00000555759 ZC2HC1AQ96GY0 325 aa14.07□□□□□ -0.16
SYNE3-204ENST00000555759 ACYP1P07311 99 aa14.07□□□□□ -0.16
SYNE3-204ENST00000555759 POU2AF1Q16633 256 aa14.07□□□□□ -0.16
SYNE3-204ENST00000555759 TRPM7Q96QT4 1865 aa14.07□□□□□ -0.16
SYNE3-204ENST00000555759 SDK2Q58EX2 2172 aa14.06□□□□□ -0.16
SYNE3-204ENST00000555759 H3BRN7 92 aa14.06□□□□□ -0.16
SYNE3-204ENST00000555759 ARHGEF17Q96PE2 2063 aaPredicted RBP14.06□□□□□ -0.16
SYNE3-204ENST00000555759 LTBP1Q14766 1721 aa14.06□□□□□ -0.16
SYNE3-204ENST00000555759 G3V4G9 280 aa14.06□□□□□ -0.16
SYNE3-204ENST00000555759 NTN5Q8WTR8 489 aaPredicted RBP14.06□□□□□ -0.16
SYNE3-204ENST00000555759 CARD19Q96LW7 228 aa14.06□□□□□ -0.16
SYNE3-204ENST00000555759 FAM223BA6NKX1 122 aa14.06□□□□□ -0.16
SYNE3-204ENST00000555759 DTX1Q86Y01 620 aa14.06□□□□□ -0.16
SYNE3-204ENST00000555759 FAM223AQ8IWN6 122 aa14.06□□□□□ -0.16
SYNE3-204ENST00000555759 RTTNQ86VV8 2226 aa14.05□□□□□ -0.16
SYNE3-204ENST00000555759 DTX2Q86UW9 622 aa14.05□□□□□ -0.16
SYNE3-204ENST00000555759 VMO1Q7Z5L0 202 aa14.05□□□□□ -0.16
SYNE3-204ENST00000555759 PCP2Q8IVA1 136 aa14.05□□□□□ -0.16
SYNE3-204ENST00000555759 CCL19Q99731 98 aa14.05□□□□□ -0.16
SYNE3-204ENST00000555759 HIGD1BQ9P298 99 aa14.05□□□□□ -0.16
SYNE3-204ENST00000555759 THBDP07204 575 aa14.05□□□□□ -0.16
SYNE3-204ENST00000555759 RSPO1Q2MKA7 263 aaPredicted RBP14.05□□□□□ -0.16
SYNE3-204ENST00000555759 USMG5Q96IX5 58 aa14.05□□□□□ -0.16
SYNE3-204ENST00000555759 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP14.04□□□□□ -0.16
SYNE3-204ENST00000555759 MORN5Q5VZ52 161 aa14.04□□□□□ -0.16
SYNE3-204ENST00000555759 C7orf69Q9H7B7 122 aa14.04□□□□□ -0.16
SYNE3-204ENST00000555759 TET1Q8NFU7 2136 aa14.04□□□□□ -0.16
SYNE3-204ENST00000555759 FANCMQ8IYD8 2048 aa14.04□□□□□ -0.16
SYNE3-204ENST00000555759 A0A087WWL8 130 aa14.04□□□□□ -0.16
SYNE3-204ENST00000555759 FAM168AQ92567 244 aa14.04□□□□□ -0.16
SYNE3-204ENST00000555759 TRBV25-1A0A075B6N4 114 aa14.04□□□□□ -0.16
SYNE3-204ENST00000555759 J3QQQ9 107 aa14.04□□□□□ -0.16
SYNE3-204ENST00000555759 IL17RELQ6ZVW7 336 aa14.04□□□□□ -0.16
SYNE3-204ENST00000555759 RNF166Q96A37 237 aaPredicted RBP14.04□□□□□ -0.16
SYNE3-204ENST00000555759 UBL5Q9BZL1 73 aa14.04□□□□□ -0.16
SYNE3-204ENST00000555759 CFC1BP0CG36 223 aa14.03□□□□□ -0.16
SYNE3-204ENST00000555759 CFC1P0CG37 223 aa14.03□□□□□ -0.16
SYNE3-204ENST00000555759 SH2D6Q7Z4S9 175 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 736.7 ms