RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 BAXQ07812 192 aa7.37□□□□□ -1.23
CCDC88C-206ENST00000553437 C12orf74Q32Q52 190 aa7.37□□□□□ -1.23
CCDC88C-206ENST00000553437 Q6ZTC4 211 aa7.37□□□□□ -1.23
CCDC88C-206ENST00000553437 BPIFA4PQ86YQ2 179 aa7.37□□□□□ -1.23
CCDC88C-206ENST00000553437 ZNF680Q8NEM1 530 aa7.37□□□□□ -1.23
CCDC88C-206ENST00000553437 OR8A1Q8NGG7 326 aa7.37□□□□□ -1.23
CCDC88C-206ENST00000553437 OR5C1Q8NGR4 320 aa7.37□□□□□ -1.23
CCDC88C-206ENST00000553437 OR1L4Q8NGR5 311 aa7.37□□□□□ -1.23
CCDC88C-206ENST00000553437 PPP1R1CQ8WVI7 109 aa7.37□□□□□ -1.23
CCDC88C-206ENST00000553437 SAT2Q96F10 170 aaPredicted RBP7.37□□□□□ -1.23
CCDC88C-206ENST00000553437 IGF2BP2-AS1Q96M15 143 aa7.37□□□□□ -1.23
CCDC88C-206ENST00000553437 NPCDR1Q9BY65 106 aa7.37□□□□□ -1.23
CCDC88C-206ENST00000553437 SLC25A31Q9H0C2 315 aa7.37□□□□□ -1.23
CCDC88C-206ENST00000553437 PXMP4Q9Y6I8 212 aa7.37□□□□□ -1.23
CCDC88C-206ENST00000553437 IGHV3OR16-12A0A075B7B8 117 aa7.36□□□□□ -1.23
CCDC88C-206ENST00000553437 HMSDA8MTL9 139 aa7.36□□□□□ -1.23
CCDC88C-206ENST00000553437 C11orf94C9JXX5 98 aa7.36□□□□□ -1.23
CCDC88C-206ENST00000553437 H3BTX0 84 aa7.36□□□□□ -1.23
CCDC88C-206ENST00000553437 M0R2Z0 102 aa7.36□□□□□ -1.23
CCDC88C-206ENST00000553437 MPDU1O75352 247 aa7.36□□□□□ -1.23
CCDC88C-206ENST00000553437 MPC2O95563 127 aa7.36□□□□□ -1.23
CCDC88C-206ENST00000553437 LY6G6CO95867 125 aa7.36□□□□□ -1.23
CCDC88C-206ENST00000553437 PRB4P10163 310 aaPredicted RBP7.36□□□□□ -1.23
CCDC88C-206ENST00000553437 SPINK13Q1W4C9 94 aa7.36□□□□□ -1.23
CCDC88C-206ENST00000553437 GCSAMLQ5JQS6 135 aa7.36□□□□□ -1.23
CCDC88C-206ENST00000553437 LCN15Q6UWW0 184 aa7.36□□□□□ -1.23
CCDC88C-206ENST00000553437 LRRC20Q8TCA0 184 aa7.36□□□□□ -1.23
CCDC88C-206ENST00000553437 C2CD4CQ8TF44 421 aa7.36□□□□□ -1.23
CCDC88C-206ENST00000553437 RPUSD4Q96CM3 377 aaKnown RBP7.36□□□□□ -1.23
CCDC88C-206ENST00000553437 PFDN5Q99471 154 aa7.36□□□□□ -1.23
CCDC88C-206ENST00000553437 GOLT1BQ9Y3E0 138 aa7.36□□□□□ -1.23
CCDC88C-206ENST00000553437 RFNGQ9Y644 331 aa7.36□□□□□ -1.23
CCDC88C-206ENST00000553437 TRAV10A0A0B4J240 114 aa7.35□□□□□ -1.23
CCDC88C-206ENST00000553437 KRTAP4-8A0A0G2JLE6 195 aa7.35□□□□□ -1.23
CCDC88C-206ENST00000553437 TMEM189A5PLL7 270 aa7.35□□□□□ -1.23
CCDC88C-206ENST00000553437 AMBPP02760 352 aa7.35□□□□□ -1.23
CCDC88C-206ENST00000553437 HIST1H1AQ02539 215 aaPredicted RBP7.35□□□□□ -1.23
CCDC88C-206ENST00000553437 CLINT1Q14677 625 aa7.35□□□□□ -1.23
CCDC88C-206ENST00000553437 CLLU1Q5K131 121 aa7.35□□□□□ -1.23
CCDC88C-206ENST00000553437 THAP6Q8TBB0 222 aa7.35□□□□□ -1.23
CCDC88C-206ENST00000553437 SLC50A1Q9BRV3 221 aa7.35□□□□□ -1.23
CCDC88C-206ENST00000553437 KRTAP9-9Q9BYP9 154 aa7.35□□□□□ -1.23
CCDC88C-206ENST00000553437 KRTAP9-4Q9BYQ2 154 aa7.35□□□□□ -1.23
CCDC88C-206ENST00000553437 ZNF586Q9NXT0 402 aa7.35□□□□□ -1.23
CCDC88C-206ENST00000553437 APLNQ9ULZ1 77 aa7.35□□□□□ -1.23
CCDC88C-206ENST00000553437 KMT2AQ03164 3969 aa7.35□□□□□ -1.23
CCDC88C-206ENST00000553437 PRAC2D3DTV9 90 aa7.34□□□□□ -1.23
CCDC88C-206ENST00000553437 HBE1P02100 147 aa7.34□□□□□ -1.23
CCDC88C-206ENST00000553437 PRM2P04554 102 aa7.34□□□□□ -1.23
CCDC88C-206ENST00000553437 TCTAP57738 103 aa7.34□□□□□ -1.23
CCDC88C-206ENST00000553437 RAB14P61106 215 aa7.34□□□□□ -1.23
CCDC88C-206ENST00000553437 LGALS9CQ6DKI2 356 aa7.34□□□□□ -1.23
CCDC88C-206ENST00000553437 BAP18Q8IXM2 172 aa7.34□□□□□ -1.23
CCDC88C-206ENST00000553437 WDR61Q9GZS3 305 aaKnown RBP7.34□□□□□ -1.23
CCDC88C-206ENST00000553437 TMEM14CQ9P0S9 112 aa7.34□□□□□ -1.23
CCDC88C-206ENST00000553437 DKK2Q9UBU2 259 aa7.34□□□□□ -1.23
CCDC88C-206ENST00000553437 TRBV19A0A075B6N1 114 aa7.33□□□□□ -1.24
CCDC88C-206ENST00000553437 TRAV12-2A0A075B6T6 113 aa7.33□□□□□ -1.24
CCDC88C-206ENST00000553437 LOC102723971A0A1B0GUV8 181 aa7.33□□□□□ -1.24
CCDC88C-206ENST00000553437 IGLL5B9A064 214 aa7.33□□□□□ -1.24
CCDC88C-206ENST00000553437 ZNF253O75346 499 aa7.33□□□□□ -1.24
CCDC88C-206ENST00000553437 NDUFB4O95168 129 aa7.33□□□□□ -1.24
CCDC88C-206ENST00000553437 INSP01308 110 aa7.33□□□□□ -1.24
CCDC88C-206ENST00000553437 SPART-AS1P0CW21 52 aa7.33□□□□□ -1.24
CCDC88C-206ENST00000553437 EMP1P54849 157 aa7.33□□□□□ -1.24
CCDC88C-206ENST00000553437 RHOBP62745 196 aa7.33□□□□□ -1.24
CCDC88C-206ENST00000553437 GUK1Q16774 197 aa7.33□□□□□ -1.24
CCDC88C-206ENST00000553437 RRN3P1Q2M238 152 aa7.33□□□□□ -1.24
CCDC88C-206ENST00000553437 FAM167A-AS1Q96KT0 104 aa7.33□□□□□ -1.24
CCDC88C-206ENST00000553437 MBD2Q9UBB5 411 aa7.33□□□□□ -1.24
CCDC88C-206ENST00000553437 DNAH10Q8IVF4 4471 aa7.33□□□□□ -1.24
CCDC88C-206ENST00000553437 HECTD4Q9Y4D8 3996 aa7.33□□□□□ -1.24
CCDC88C-206ENST00000553437 FXYD6-FXYD2A0A087WZ82 144 aa7.32□□□□□ -1.24
CCDC88C-206ENST00000553437 DEFB131BA0A096LNP1 70 aa7.32□□□□□ -1.24
CCDC88C-206ENST00000553437 ZNF705GA8MUZ8 300 aaPredicted RBP7.32□□□□□ -1.24
CCDC88C-206ENST00000553437 PET100P0DJ07 73 aa7.32□□□□□ -1.24
CCDC88C-206ENST00000553437 PYYP10082 97 aa7.32□□□□□ -1.24
CCDC88C-206ENST00000553437 HIST1H1EP10412 219 aaKnown RBP7.32□□□□□ -1.24
CCDC88C-206ENST00000553437 RPL12P30050 165 aaKnown RBP7.32□□□□□ -1.24
CCDC88C-206ENST00000553437 KIR3DS1Q14943 382 aa7.32□□□□□ -1.24
CCDC88C-206ENST00000553437 FAM222AQ5U5X8 452 aa7.32□□□□□ -1.24
CCDC88C-206ENST00000553437 TMUB2Q71RG4 321 aa7.32□□□□□ -1.24
CCDC88C-206ENST00000553437 MIR17HGQ75NE6 70 aa7.32□□□□□ -1.24
CCDC88C-206ENST00000553437 ATP5SQ99766 215 aa7.32□□□□□ -1.24
CCDC88C-206ENST00000553437 TMEM208Q9BTX3 173 aa7.32□□□□□ -1.24
CCDC88C-206ENST00000553437 SLC25A2Q9BXI2 301 aa7.32□□□□□ -1.24
CCDC88C-206ENST00000553437 WFDC1Q9HC57 220 aa7.32□□□□□ -1.24
CCDC88C-206ENST00000553437 YTHDF2Q9Y5A9 579 aaKnown RBP7.32□□□□□ -1.24
CCDC88C-206ENST00000553437 DNAH6Q9C0G6 4158 aa7.31□□□□□ -1.24
CCDC88C-206ENST00000553437 IGHV4-4A0A075B6R2 117 aa7.31□□□□□ -1.24
CCDC88C-206ENST00000553437 A0A0D9SG52 128 aa7.31□□□□□ -1.24
CCDC88C-206ENST00000553437 PLAC8L1A1L4L8 177 aa7.31□□□□□ -1.24
CCDC88C-206ENST00000553437 CT45A10P0DMU9 189 aa7.31□□□□□ -1.24
CCDC88C-206ENST00000553437 AZU1P20160 251 aa7.31□□□□□ -1.24
CCDC88C-206ENST00000553437 TSPOP30536 169 aa7.31□□□□□ -1.24
CCDC88C-206ENST00000553437 CDKN1BP46527 198 aa7.31□□□□□ -1.24
CCDC88C-206ENST00000553437 COMMD7Q86VX2 200 aa7.31□□□□□ -1.24
CCDC88C-206ENST00000553437 RPP25LQ8N5L8 163 aaKnown RBP7.31□□□□□ -1.24
CCDC88C-206ENST00000553437 MRPL53Q96EL3 112 aaKnown RBP7.31□□□□□ -1.24
CCDC88C-206ENST00000553437 PARD6GQ9BYG4 376 aaPredicted RBP7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms