RNA–Protein interactions for RNA: ENST00000543555.5

MSH2-206, Transcript of mutS homolog 2, humanhuman

TSL 2 BASIC

Gene MSH2, Length 3,024 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-206ENST00000543555 LINC01548A6NM66 108 aa10.82□□□□□ -0.68
MSH2-206ENST00000543555 FOXA3P55318 350 aaPredicted RBP10.82□□□□□ -0.68
MSH2-206ENST00000543555 KRTDAPP60985 99 aa10.82□□□□□ -0.68
MSH2-206ENST00000543555 FAM19A2Q8N3H0 131 aa10.82□□□□□ -0.68
MSH2-206ENST00000543555 C5orf56Q8N8D9 126 aa10.82□□□□□ -0.68
MSH2-206ENST00000543555 CCL19Q99731 98 aa10.82□□□□□ -0.68
MSH2-206ENST00000543555 IGHV3-35A0A0C4DH35 117 aa10.81□□□□□ -0.68
MSH2-206ENST00000543555 IGHV4-61A0A0C4DH41 118 aa10.81□□□□□ -0.68
MSH2-206ENST00000543555 G3V318 75 aa10.81□□□□□ -0.68
MSH2-206ENST00000543555 APOHP02749 345 aaPredicted RBP10.81□□□□□ -0.68
MSH2-206ENST00000543555 CRIP1P50238 77 aa10.81□□□□□ -0.68
MSH2-206ENST00000543555 PRR31Q5SQ13 230 aa10.81□□□□□ -0.68
MSH2-206ENST00000543555 NIT1Q86X76 327 aa10.81□□□□□ -0.68
MSH2-206ENST00000543555 SMAD5-AS1Q9Y6J3 95 aa10.81□□□□□ -0.68
MSH2-206ENST00000543555 S100A7P31151 101 aa10.81□□□□□ -0.68
MSH2-206ENST00000543555 LURAP1LQ8IV03 231 aa10.81□□□□□ -0.68
MSH2-206ENST00000543555 IGHV3OR16-10A0A075B7F0 116 aa10.8□□□□□ -0.68
MSH2-206ENST00000543555 IGHV3OR16-8A0A075B7F1 116 aa10.8□□□□□ -0.68
MSH2-206ENST00000543555 HAX1O00165 279 aa10.8□□□□□ -0.68
MSH2-206ENST00000543555 GOSR1O95249 250 aa10.8□□□□□ -0.68
MSH2-206ENST00000543555 CLEC3BP05452 202 aa10.8□□□□□ -0.68
MSH2-206ENST00000543555 ARL6IP6Q8N6S5 226 aa10.8□□□□□ -0.68
MSH2-206ENST00000543555 Q8N976 141 aa10.8□□□□□ -0.68
MSH2-206ENST00000543555 IGHV1-69DA0A0B4J2H0 117 aa10.8□□□□□ -0.68
MSH2-206ENST00000543555 IGHV1-69P01742 117 aa10.8□□□□□ -0.68
MSH2-206ENST00000543555 NTF3P20783 257 aa10.8□□□□□ -0.68
MSH2-206ENST00000543555 TDRG1Q3Y452 100 aa10.8□□□□□ -0.68
MSH2-206ENST00000543555 C10orf105Q8TEF2 133 aa10.8□□□□□ -0.68
MSH2-206ENST00000543555 C8orf49Q96NF6 230 aa10.8□□□□□ -0.68
MSH2-206ENST00000543555 ZFAND3Q9H8U3 227 aa10.8□□□□□ -0.68
MSH2-206ENST00000543555 HSBP1O75506 76 aa10.79□□□□□ -0.68
MSH2-206ENST00000543555 CCDC140Q96MF4 163 aa10.79□□□□□ -0.68
MSH2-206ENST00000543555 CHEK1O14757 476 aa10.79□□□□□ -0.68
MSH2-206ENST00000543555 CT45A10P0DMU9 189 aa10.79□□□□□ -0.68
MSH2-206ENST00000543555 TMEM219Q86XT9 240 aa10.79□□□□□ -0.68
MSH2-206ENST00000543555 MOB4Q9Y3A3 225 aa10.79□□□□□ -0.68
MSH2-206ENST00000543555 PRRC2AP48634 2157 aaKnown RBP10.79□□□□□ -0.68
MSH2-206ENST00000543555 IGKV2-40A0A087WW87 121 aaPredicted RBP10.79□□□□□ -0.68
MSH2-206ENST00000543555 IGKV2D-40P01614 121 aaPredicted RBP10.79□□□□□ -0.68
MSH2-206ENST00000543555 NDUFS8O00217 210 aa10.78□□□□□ -0.68
MSH2-206ENST00000543555 C3orf79P0CE67 100 aa10.78□□□□□ -0.68
MSH2-206ENST00000543555 RNASEKQ6P5S7 137 aaKnown RBP10.78□□□□□ -0.68
MSH2-206ENST00000543555 CLEC19AQ6UXS0 136 aa10.78□□□□□ -0.68
MSH2-206ENST00000543555 EEF1AKMT3Q96AZ1 226 aa10.78□□□□□ -0.68
MSH2-206ENST00000543555 LOC102724200A0A096LPH7 203 aaPredicted RBP10.78□□□□□ -0.68
MSH2-206ENST00000543555 TRAV40A0A0B4J280 105 aa10.78□□□□□ -0.68
MSH2-206ENST00000543555 A0A1B0GUT8 65 aa10.78□□□□□ -0.68
MSH2-206ENST00000543555 BRD3OSQ6XYD6 125 aa10.78□□□□□ -0.68
MSH2-206ENST00000543555 PIFOQ8TCI5 191 aa10.78□□□□□ -0.68
MSH2-206ENST00000543555 C20orf144Q9BQM9 153 aa10.78□□□□□ -0.68
MSH2-206ENST00000543555 VAMP8Q9BV40 100 aa10.78□□□□□ -0.68
MSH2-206ENST00000543555 ARMS2P0C7Q2 107 aa10.77□□□□□ -0.68
MSH2-206ENST00000543555 RAB9AP51151 201 aa10.77□□□□□ -0.68
MSH2-206ENST00000543555 BORCS7Q96B45 105 aa10.77□□□□□ -0.68
MSH2-206ENST00000543555 ACANP16112 2415 aa10.77□□□□□ -0.69
MSH2-206ENST00000543555 FBLL1A6NHQ2 334 aaKnown RBP10.77□□□□□ -0.69
MSH2-206ENST00000543555 BUB3O43684 328 aa10.77□□□□□ -0.69
MSH2-206ENST00000543555 IGHG4P01861 327 aa10.77□□□□□ -0.69
MSH2-206ENST00000543555 CLEC2AQ6UVW9 174 aa10.77□□□□□ -0.69
MSH2-206ENST00000543555 COX8CQ7Z4L0 72 aa10.77□□□□□ -0.69
MSH2-206ENST00000543555 URB1-AS1Q96HZ7 61 aa10.77□□□□□ -0.69
MSH2-206ENST00000543555 SPOCK3Q9BQ16 436 aa10.77□□□□□ -0.69
MSH2-206ENST00000543555 PAM16Q9Y3D7 125 aa10.77□□□□□ -0.69
MSH2-206ENST00000543555 TRBV7-1A0A0A6YYK4 115 aa10.76□□□□□ -0.69
MSH2-206ENST00000543555 RIGQ13278 110 aa10.76□□□□□ -0.69
MSH2-206ENST00000543555 SAPCD1Q5SSQ6 148 aa10.76□□□□□ -0.69
MSH2-206ENST00000543555 FAM162BQ5T6X4 162 aa10.76□□□□□ -0.69
MSH2-206ENST00000543555 Q6AWC8 147 aa10.76□□□□□ -0.69
MSH2-206ENST00000543555 IGFL4Q6B9Z1 124 aa10.76□□□□□ -0.69
MSH2-206ENST00000543555 NDFIP1Q9BT67 221 aa10.76□□□□□ -0.69
MSH2-206ENST00000543555 CLPSL1A2RUU4 121 aa10.76□□□□□ -0.69
MSH2-206ENST00000543555 M0R2Z0 102 aa10.76□□□□□ -0.69
MSH2-206ENST00000543555 HLA-DMBP28068 263 aa10.76□□□□□ -0.69
MSH2-206ENST00000543555 ATP5J2P56134 94 aa10.76□□□□□ -0.69
MSH2-206ENST00000543555 RELQ04864 619 aaPredicted RBP10.76□□□□□ -0.69
MSH2-206ENST00000543555 MAPK1IP1LQ8NDC0 245 aa10.76□□□□□ -0.69
MSH2-206ENST00000543555 PRR25Q96S07 402 aa10.76□□□□□ -0.69
MSH2-206ENST00000543555 MEGF9Q9H1U4 602 aa10.76□□□□□ -0.69
MSH2-206ENST00000543555 A0A087X0K7 114 aa10.76□□□□□ -0.69
MSH2-206ENST00000543555 SH2D1AO60880 128 aa10.76□□□□□ -0.69
MSH2-206ENST00000543555 C19orf54Q5BKX5 351 aa10.76□□□□□ -0.69
MSH2-206ENST00000543555 GATD1Q8NB37 220 aa10.76□□□□□ -0.69
MSH2-206ENST00000543555 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.75□□□□□ -0.691e-18■■■■■ 36.7
MSH2-206ENST00000543555 IGHV4-30-2A0A087WSY4 118 aa10.75□□□□□ -0.69
MSH2-206ENST00000543555 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.75□□□□□ -0.69
MSH2-206ENST00000543555 TRAV41A0A0B4J266 112 aa10.75□□□□□ -0.69
MSH2-206ENST00000543555 LBHQ53QV2 105 aaPredicted RBP10.75□□□□□ -0.69
MSH2-206ENST00000543555 PSMG3-AS1Q96PY0 264 aa10.75□□□□□ -0.69
MSH2-206ENST00000543555 A0A1B0GW15 77 aa10.75□□□□□ -0.69
MSH2-206ENST00000543555 FAM181BA6NEQ2 426 aa10.75□□□□□ -0.69
MSH2-206ENST00000543555 CRIP2P52943 208 aaPredicted RBP10.75□□□□□ -0.69
MSH2-206ENST00000543555 VGLL1Q99990 258 aa10.75□□□□□ -0.69
MSH2-206ENST00000543555 TEX15Q9BXT5 2789 aa10.75□□□□□ -0.69
MSH2-206ENST00000543555 ABCA2Q9BZC7 2435 aa10.75□□□□□ -0.69
MSH2-206ENST00000543555 TMEM189A5PLL7 270 aa10.74□□□□□ -0.69
MSH2-206ENST00000543555 IGHV4-38-2P0DP08 117 aa10.74□□□□□ -0.69
MSH2-206ENST00000543555 ATP5G2Q06055 141 aa10.74□□□□□ -0.69
MSH2-206ENST00000543555 LCN12Q6JVE5 192 aa10.74□□□□□ -0.69
MSH2-206ENST00000543555 Q8TAT8 98 aa10.74□□□□□ -0.69
MSH2-206ENST00000543555 C2orf88Q9BSF0 95 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms