RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 PKIGQ9Y2B9 76 aa2.26□□□□□ -2.05
USP28-210ENST00000542033 NYNRINQ9P2P1 1898 aaKnown RBP2.26□□□□□ -2.05
USP28-210ENST00000542033 NINQ8N4C6 2090 aa2.26□□□□□ -2.05
USP28-210ENST00000542033 TNRC6AQ8NDV7 1962 aaKnown RBP2.25□□□□□ -2.05
USP28-210ENST00000542033 PLXNA3P51805 1871 aa2.25□□□□□ -2.05
USP28-210ENST00000542033 PLXNA4Q9HCM2 1894 aa2.25□□□□□ -2.05
USP28-210ENST00000542033 SSC5DA1L4H1 1573 aa2.25□□□□□ -2.05
USP28-210ENST00000542033 TRBV20-1A0A075B6N2 111 aa2.25□□□□□ -2.05
USP28-210ENST00000542033 FAM240AA0A1B0GVK7 77 aa2.25□□□□□ -2.05
USP28-210ENST00000542033 MYBPHLA2RUH7 354 aa2.25□□□□□ -2.05
USP28-210ENST00000542033 A6NIN4 97 aa2.25□□□□□ -2.05
USP28-210ENST00000542033 LOC730098B7Z3J9 87 aa2.25□□□□□ -2.05
USP28-210ENST00000542033 F6UB75 175 aa2.25□□□□□ -2.05
USP28-210ENST00000542033 H7C1H1 209 aa2.25□□□□□ -2.05
USP28-210ENST00000542033 J3QLW9 94 aa2.25□□□□□ -2.05
USP28-210ENST00000542033 M0R1B8 84 aa2.25□□□□□ -2.05
USP28-210ENST00000542033 SSSCA1O60232 199 aa2.25□□□□□ -2.05
USP28-210ENST00000542033 TRACP01848 142 aa2.25□□□□□ -2.05
USP28-210ENST00000542033 CHTF8P0CG12 524 aa2.25□□□□□ -2.05
USP28-210ENST00000542033 COX7CP15954 63 aa2.25□□□□□ -2.05
USP28-210ENST00000542033 PFN2P35080 140 aa2.25□□□□□ -2.05
USP28-210ENST00000542033 PPP1CCP36873 323 aaKnown RBP2.25□□□□□ -2.05
USP28-210ENST00000542033 FOXA3P55318 350 aaPredicted RBP2.25□□□□□ -2.05
USP28-210ENST00000542033 RPL23P62829 140 aaKnown RBP2.25□□□□□ -2.05
USP28-210ENST00000542033 WFDC2Q14508 124 aa2.25□□□□□ -2.05
USP28-210ENST00000542033 KIAA0087Q14695 138 aa2.25□□□□□ -2.05
USP28-210ENST00000542033 CDK5R1Q15078 307 aa2.25□□□□□ -2.05
USP28-210ENST00000542033 MRPL2Q5T653 305 aaKnown RBP2.25□□□□□ -2.05
USP28-210ENST00000542033 HES3Q5TGS1 186 aa2.25□□□□□ -2.05
USP28-210ENST00000542033 Q6ZRU5 148 aa2.25□□□□□ -2.05
USP28-210ENST00000542033 MRPL55Q7Z7F7 128 aaKnown RBP2.25□□□□□ -2.05
USP28-210ENST00000542033 LHFPL1Q86WI0 220 aa2.25□□□□□ -2.05
USP28-210ENST00000542033 SBSPONQ8IVN8 264 aa2.25□□□□□ -2.05
USP28-210ENST00000542033 ANKRD29Q8N6D5 301 aa2.25□□□□□ -2.05
USP28-210ENST00000542033 OR2A1Q8NGT9 310 aa2.25□□□□□ -2.05
USP28-210ENST00000542033 FAM213BQ8TBF2 198 aa2.25□□□□□ -2.05
USP28-210ENST00000542033 TXNDC17Q9BRA2 123 aa2.25□□□□□ -2.05
USP28-210ENST00000542033 KCNIP2Q9NS61 270 aa2.25□□□□□ -2.05
USP28-210ENST00000542033 SLC39A9Q9NUM3 307 aa2.25□□□□□ -2.05
USP28-210ENST00000542033 HIGD1BQ9P298 99 aa2.25□□□□□ -2.05
USP28-210ENST00000542033 ZNF835Q9Y2P0 537 aa2.25□□□□□ -2.05
USP28-210ENST00000542033 LRRK1Q38SD2 2015 aa2.25□□□□□ -2.05
USP28-210ENST00000542033 KMT2EQ8IZD2 1858 aa2.24□□□□□ -2.05
USP28-210ENST00000542033 KIF26AQ9ULI4 1882 aaPredicted RBP2.24□□□□□ -2.05
USP28-210ENST00000542033 TRAV12-2A0A075B6T6 113 aa2.24□□□□□ -2.05
USP28-210ENST00000542033 TRAV27A0A087WT01 109 aa2.24□□□□□ -2.05
USP28-210ENST00000542033 TRAV13-1A0A0B4J241 112 aa2.24□□□□□ -2.05
USP28-210ENST00000542033 TRAV26-2A0A0B4J265 109 aa2.24□□□□□ -2.05
USP28-210ENST00000542033 IGKV1D-13A0A0B4J2D9 117 aa2.24□□□□□ -2.05
USP28-210ENST00000542033 IGHV1-24A0A0C4DH33 117 aa2.24□□□□□ -2.05
USP28-210ENST00000542033 A0A0J9YXY3 114 aa2.24□□□□□ -2.05
USP28-210ENST00000542033 C5orf63A6NC05 138 aa2.24□□□□□ -2.05
USP28-210ENST00000542033 FAM24AA6NFZ4 105 aa2.24□□□□□ -2.05
USP28-210ENST00000542033 C2orf70A6NJV1 201 aa2.24□□□□□ -2.05
USP28-210ENST00000542033 SMKR1H3BMG3 65 aa2.24□□□□□ -2.05
USP28-210ENST00000542033 J3QRE1 110 aa2.24□□□□□ -2.05
USP28-210ENST00000542033 OXTP01178 125 aa2.24□□□□□ -2.05
USP28-210ENST00000542033 HLA-DQA1P01909 254 aa2.24□□□□□ -2.05
USP28-210ENST00000542033 APCSP02743 223 aa2.24□□□□□ -2.05
USP28-210ENST00000542033 IGKV1-13P0DP09 117 aa2.24□□□□□ -2.05
USP28-210ENST00000542033 PYYP10082 97 aa2.24□□□□□ -2.05
USP28-210ENST00000542033 ZNF708P17019 499 aa2.24□□□□□ -2.05
USP28-210ENST00000542033 CBLN1P23435 193 aa2.24□□□□□ -2.05
USP28-210ENST00000542033 PPP1CAP62136 330 aa2.24□□□□□ -2.05
USP28-210ENST00000542033 MRPS36P82909 103 aaKnown RBP2.24□□□□□ -2.05
USP28-210ENST00000542033 VMA21Q3ZAQ7 101 aa2.24□□□□□ -2.05
USP28-210ENST00000542033 C2orf83Q53S99 150 aa2.24□□□□□ -2.05
USP28-210ENST00000542033 FAM201AQ5SY85 155 aa2.24□□□□□ -2.05
USP28-210ENST00000542033 LINC01545Q5VT33 79 aa2.24□□□□□ -2.05
USP28-210ENST00000542033 CFAP126Q5VTH2 177 aa2.24□□□□□ -2.05
USP28-210ENST00000542033 Q6P435 159 aa2.24□□□□□ -2.05
USP28-210ENST00000542033 C2orf91Q6ZV80 131 aa2.24□□□□□ -2.05
USP28-210ENST00000542033 AAED1Q7RTV5 226 aa2.24□□□□□ -2.05
USP28-210ENST00000542033 KRTAP11-1Q8IUC1 163 aa2.24□□□□□ -2.05
USP28-210ENST00000542033 EXOC3-AS1Q8N2X6 119 aa2.24□□□□□ -2.05
USP28-210ENST00000542033 ZNF645Q8N7E2 425 aa2.24□□□□□ -2.05
USP28-210ENST00000542033 ZNF563Q8TA94 476 aa2.24□□□□□ -2.05
USP28-210ENST00000542033 LMX1AQ8TE12 382 aa2.24□□□□□ -2.05
USP28-210ENST00000542033 FGF13Q92913 245 aa2.24□□□□□ -2.05
USP28-210ENST00000542033 EEF1AKMT3Q96AZ1 226 aa2.24□□□□□ -2.05
USP28-210ENST00000542033 C16orf74Q96GX8 76 aa2.24□□□□□ -2.05
USP28-210ENST00000542033 ABHD14BQ96IU4 210 aa2.24□□□□□ -2.05
USP28-210ENST00000542033 SMIM7Q9BQ49 75 aa2.24□□□□□ -2.05
USP28-210ENST00000542033 TMEM147Q9BVK8 224 aa2.24□□□□□ -2.05
USP28-210ENST00000542033 AGPAT4-IT1Q9H0P7 198 aa2.24□□□□□ -2.05
USP28-210ENST00000542033 CKLFQ9UBR5 152 aa2.24□□□□□ -2.05
USP28-210ENST00000542033 COL5A3P25940 1745 aaPredicted RBP2.24□□□□□ -2.05
USP28-210ENST00000542033 NRXN2Q9P2S2 1712 aa2.24□□□□□ -2.05
USP28-210ENST00000542033 NUP205Q92621 2012 aa2.24□□□□□ -2.05
USP28-210ENST00000542033 ADAMTSL1Q8N6G6 1762 aa2.23□□□□□ -2.05
USP28-210ENST00000542033 TICRRQ7Z2Z1 1910 aa2.23□□□□□ -2.05
USP28-210ENST00000542033 TRBV19A0A075B6N1 114 aa2.23□□□□□ -2.05
USP28-210ENST00000542033 SMIM26A0A096LP01 95 aa2.23□□□□□ -2.05
USP28-210ENST00000542033 FAM236AA0A1B0GUQ0 79 aa2.23□□□□□ -2.05
USP28-210ENST00000542033 FAM236BA0A1B0GV22 79 aa2.23□□□□□ -2.05
USP28-210ENST00000542033 A8MWL6 223 aa2.23□□□□□ -2.05
USP28-210ENST00000542033 OOSP1A8MZH6 123 aa2.23□□□□□ -2.05
USP28-210ENST00000542033 KRTAP4-16G5E9R7 235 aaPredicted RBP2.23□□□□□ -2.05
USP28-210ENST00000542033 M0R129 80 aa2.23□□□□□ -2.05
USP28-210ENST00000542033 PGLYRP1O75594 196 aaPredicted RBP2.23□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms