RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	LAMA3	Q16787	3333 aa		0.76	□□□□□ -2.29
CD44-238	ENST00000534296	WDR87	Q6ZQQ6	2873 aa		0.76	□□□□□ -2.29
CD44-238	ENST00000534296	NF1	P21359	2839 aa		0.76	□□□□□ -2.29
CD44-238	ENST00000534296	NIPBL	Q6KC79	2804 aa	eCLIP	0.76	□□□□□ -2.29
CD44-238	ENST00000534296	UNC13C	Q8NB66	2214 aa		0.76	□□□□□ -2.29
CD44-238	ENST00000534296	USP34	Q70CQ2	3546 aa		0.76	□□□□□ -2.29
CD44-238	ENST00000534296	DCHS1	Q96JQ0	3298 aa		0.76	□□□□□ -2.29
CD44-238	ENST00000534296	N4BP2	Q86UW6	1770 aa	Predicted RBP	0.75	□□□□□ -2.29
CD44-238	ENST00000534296	TG	P01266	2768 aa		0.75	□□□□□ -2.29
CD44-238	ENST00000534296	ITPR2	Q14571	2701 aa		0.75	□□□□□ -2.29
CD44-238	ENST00000534296	NHSL1	Q5SYE7	1610 aa		0.75	□□□□□ -2.29
CD44-238	ENST00000534296	HERC2	O95714	4834 aa		0.75	□□□□□ -2.29
CD44-238	ENST00000534296	TNS3	Q68CZ2	1445 aa		0.75	□□□□□ -2.29
CD44-238	ENST00000534296		A0A096LPI6	279 aa		0.75	□□□□□ -2.29
CD44-238	ENST00000534296	IGHV1-58	A0A0C4DH39	117 aa		0.75	□□□□□ -2.29
CD44-238	ENST00000534296	TRBV6-4	A0A1B0GX49	114 aa		0.75	□□□□□ -2.29
CD44-238	ENST00000534296	CCL25	O15444	150 aa		0.75	□□□□□ -2.29
CD44-238	ENST00000534296	LYRM1	O43325	122 aa		0.75	□□□□□ -2.29
CD44-238	ENST00000534296	IFNA1	P01562	189 aa		0.75	□□□□□ -2.29
CD44-238	ENST00000534296	NEFH	P12036	1026 aa		0.75	□□□□□ -2.29
CD44-238	ENST00000534296	OGN	P20774	298 aa	Known RBP	0.75	□□□□□ -2.29
CD44-238	ENST00000534296	TCTA	P57738	103 aa		0.75	□□□□□ -2.29
CD44-238	ENST00000534296	KRTAP10-4	P60372	401 aa	Predicted RBP	0.75	□□□□□ -2.29
CD44-238	ENST00000534296	VBP1	P61758	197 aa		0.75	□□□□□ -2.29
CD44-238	ENST00000534296	GNG5	P63218	68 aa		0.75	□□□□□ -2.29
CD44-238	ENST00000534296	PSG9	Q00887	426 aa		0.75	□□□□□ -2.29
CD44-238	ENST00000534296	SNCB	Q16143	134 aa		0.75	□□□□□ -2.29
CD44-238	ENST00000534296	LINC00322	Q6ZN03	302 aa	Predicted RBP	0.75	□□□□□ -2.29
CD44-238	ENST00000534296	PLPP5	Q8NEB5	264 aa		0.75	□□□□□ -2.29
CD44-238	ENST00000534296	OR5D16	Q8NGK9	328 aa		0.75	□□□□□ -2.29
CD44-238	ENST00000534296	ZHX1-C8orf76	Q96EF9	292 aa		0.75	□□□□□ -2.29
CD44-238	ENST00000534296	TMEM126A	Q9H061	195 aa		0.75	□□□□□ -2.29
CD44-238	ENST00000534296	TCEAL2	Q9H3H9	227 aa	Predicted RBP	0.75	□□□□□ -2.29
CD44-238	ENST00000534296	POPDC3	Q9HBV1	291 aa		0.75	□□□□□ -2.29
CD44-238	ENST00000534296	LYRM2	Q9NU23	88 aa	Predicted RBP	0.75	□□□□□ -2.29
CD44-238	ENST00000534296	LAMTOR3	Q9UHA4	124 aa		0.75	□□□□□ -2.29
CD44-238	ENST00000534296	MYO18A	Q92614	2054 aa	Known RBP	0.75	□□□□□ -2.29
CD44-238	ENST00000534296	DSP	P15924	2871 aa	Known RBP	0.75	□□□□□ -2.29
CD44-238	ENST00000534296	LAMB4	A4D0S4	1761 aa		0.75	□□□□□ -2.29
CD44-238	ENST00000534296	ACAN	P16112	2415 aa		0.74	□□□□□ -2.29
CD44-238	ENST00000534296	OTOG	Q6ZRI0	2925 aa		0.74	□□□□□ -2.29
CD44-238	ENST00000534296	TLCD2	A6NGC4	264 aa		0.74	□□□□□ -2.29
CD44-238	ENST00000534296	TMEM256-PLSCR3	K7ERE1	68 aa		0.74	□□□□□ -2.29
CD44-238	ENST00000534296	GPR31	O00270	319 aa		0.74	□□□□□ -2.29
CD44-238	ENST00000534296	NUPR1	O60356	82 aa		0.74	□□□□□ -2.29
CD44-238	ENST00000534296	CXCL8	P10145	99 aa		0.74	□□□□□ -2.29
CD44-238	ENST00000534296	CIRBP	Q14011	172 aa	Known RBP	0.74	□□□□□ -2.29
CD44-238	ENST00000534296	POU6F1	Q14863	301 aa		0.74	□□□□□ -2.29
CD44-238	ENST00000534296	HAGHL	Q6PII5	290 aa	Predicted RBP	0.74	□□□□□ -2.29
CD44-238	ENST00000534296	LYG2	Q86SG7	212 aa		0.74	□□□□□ -2.29
CD44-238	ENST00000534296	AP3S1	Q92572	193 aa		0.74	□□□□□ -2.29
CD44-238	ENST00000534296	RAB37	Q96AX2	223 aa		0.74	□□□□□ -2.29
CD44-238	ENST00000534296	CHCHD1	Q96BP2	118 aa	Known RBP	0.74	□□□□□ -2.29
CD44-238	ENST00000534296	PRND	Q9UKY0	176 aa		0.74	□□□□□ -2.29
CD44-238	ENST00000534296	ADGRB2	O60241	1585 aa		0.74	□□□□□ -2.29
CD44-238	ENST00000534296	CASP8AP2	Q9UKL3	1982 aa		0.74	□□□□□ -2.29
CD44-238	ENST00000534296	ANKRD31	Q8N7Z5	1873 aa		0.73	□□□□□ -2.29
CD44-238	ENST00000534296	CHD3	Q12873	2000 aa	Known RBP	0.73	□□□□□ -2.29
CD44-238	ENST00000534296		A0A1W2PPM0	123 aa		0.73	□□□□□ -2.29
CD44-238	ENST00000534296		E7EUB6	86 aa		0.73	□□□□□ -2.29
CD44-238	ENST00000534296	COX7C	P15954	63 aa		0.73	□□□□□ -2.29
CD44-238	ENST00000534296	TMBIM6	P55061	237 aa		0.73	□□□□□ -2.29
CD44-238	ENST00000534296	DSCR4	P56555	118 aa	Predicted RBP	0.73	□□□□□ -2.29
CD44-238	ENST00000534296	KLRD1	Q13241	179 aa		0.73	□□□□□ -2.29
CD44-238	ENST00000534296	LRRC18	Q8N456	261 aa		0.73	□□□□□ -2.29
CD44-238	ENST00000534296	CDC26	Q8NHZ8	85 aa		0.73	□□□□□ -2.29
CD44-238	ENST00000534296	PAIP2	Q9BPZ3	127 aa	Known RBP	0.73	□□□□□ -2.29
CD44-238	ENST00000534296	SH3BGRL3	Q9H299	93 aa		0.73	□□□□□ -2.29
CD44-238	ENST00000534296	CACYBP	Q9HB71	228 aa	Known RBP	0.73	□□□□□ -2.29
CD44-238	ENST00000534296	COL12A1	Q99715	3063 aa		0.73	□□□□□ -2.29
CD44-238	ENST00000534296	ZCCHC11	Q5TAX3	1644 aa	Known RBP	0.73	□□□□□ -2.29
CD44-238	ENST00000534296	PTPRZ1	P23471	2315 aa	Predicted RBP	0.73	□□□□□ -2.29
CD44-238	ENST00000534296	VPS13A	Q96RL7	3174 aa		0.73	□□□□□ -2.29
CD44-238	ENST00000534296	IQSEC2	Q5JU85	1478 aa		0.73	□□□□□ -2.29
CD44-238	ENST00000534296	MIA2	Q96PC5	1412 aa		0.72	□□□□□ -2.29
CD44-238	ENST00000534296	MYO5A	Q9Y4I1	1855 aa	Known RBP	0.72	□□□□□ -2.29
CD44-238	ENST00000534296	FRYL	O94915	3013 aa		0.72	□□□□□ -2.29
CD44-238	ENST00000534296	TRAV27	A0A087WT01	109 aa		0.72	□□□□□ -2.29
CD44-238	ENST00000534296		M0R378	163 aa		0.72	□□□□□ -2.29
CD44-238	ENST00000534296	RER1	O15258	196 aa		0.72	□□□□□ -2.29
CD44-238	ENST00000534296	HIST1H2BK	O60814	126 aa		0.72	□□□□□ -2.29
CD44-238	ENST00000534296	KLF7	O75840	302 aa	Predicted RBP	0.72	□□□□□ -2.29
CD44-238	ENST00000534296	HIST1H2BJ	P06899	126 aa		0.72	□□□□□ -2.29
CD44-238	ENST00000534296	PRB4	P10163	310 aa	Predicted RBP	0.72	□□□□□ -2.29
CD44-238	ENST00000534296		Q8IYB0	196 aa		0.72	□□□□□ -2.29
CD44-238	ENST00000534296	STX19	Q8N4C7	294 aa		0.72	□□□□□ -2.29
CD44-238	ENST00000534296	OR10AC1	Q8NH08	325 aa		0.72	□□□□□ -2.29
CD44-238	ENST00000534296	OR10AG1	Q8NH19	301 aa		0.72	□□□□□ -2.29
CD44-238	ENST00000534296	PSMF1	Q92530	271 aa		0.72	□□□□□ -2.29
CD44-238	ENST00000534296	LINC00052	Q96N35	136 aa		0.72	□□□□□ -2.29
CD44-238	ENST00000534296	LYSMD1	Q96S90	227 aa		0.72	□□□□□ -2.29
CD44-238	ENST00000534296	IL20	Q9NYY1	176 aa		0.72	□□□□□ -2.29
CD44-238	ENST00000534296	HSPB8	Q9UJY1	196 aa		0.72	□□□□□ -2.29
CD44-238	ENST00000534296	WNK1	Q9H4A3	2382 aa		0.72	□□□□□ -2.29
CD44-238	ENST00000534296	KMT2D	O14686	5537 aa		0.72	□□□□□ -2.29
CD44-238	ENST00000534296	PTPRF	P10586	1907 aa		0.72	□□□□□ -2.29
CD44-238	ENST00000534296	CACNA1H	O95180	2353 aa		0.71	□□□□□ -2.3
CD44-238	ENST00000534296	FREM3	P0C091	2139 aa		0.71	□□□□□ -2.3
CD44-238	ENST00000534296	HIVEP1	P15822	2718 aa		0.71	□□□□□ -2.3
CD44-238	ENST00000534296	TRAV5	A0A0B4J249	113 aa		0.71	□□□□□ -2.3

Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms