RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 EXOC3-AS1Q8N2X6 119 aa10.34□□□□□ -0.75
C9orf3-221ENST00000489562 C20orf173Q96LM9 149 aa10.34□□□□□ -0.75
C9orf3-221ENST00000489562 YTHDF2Q9Y5A9 579 aaKnown RBP10.34□□□□□ -0.75
C9orf3-221ENST00000489562 GGTLC3B5MD39 225 aa10.33□□□□□ -0.76
C9orf3-221ENST00000489562 SLC25A5P05141 298 aaKnown RBP10.33□□□□□ -0.76
C9orf3-221ENST00000489562 BCL2P10415 239 aa10.33□□□□□ -0.76
C9orf3-221ENST00000489562 SUMO1P63165 101 aaKnown RBP10.33□□□□□ -0.76
C9orf3-221ENST00000489562 CST9LP1Q5W188 147 aa10.33□□□□□ -0.76
C9orf3-221ENST00000489562 IGFL4Q6B9Z1 124 aa10.33□□□□□ -0.76
C9orf3-221ENST00000489562 FOXI2Q6ZQN5 318 aa10.33□□□□□ -0.76
C9orf3-221ENST00000489562 RPUSD4Q96CM3 377 aaKnown RBP10.33□□□□□ -0.76
C9orf3-221ENST00000489562 PRR25Q96S07 402 aa10.33□□□□□ -0.76
C9orf3-221ENST00000489562 C19orf73Q9NVV2 129 aa10.33□□□□□ -0.76
C9orf3-221ENST00000489562 AGRNO00468 2067 aa10.32□□□□□ -0.76
C9orf3-221ENST00000489562 SERTM2A0A1B0GWG4 89 aa10.32□□□□□ -0.76
C9orf3-221ENST00000489562 M0R3E3 92 aa10.32□□□□□ -0.76
C9orf3-221ENST00000489562 HLA-DMBP28068 263 aa10.32□□□□□ -0.76
C9orf3-221ENST00000489562 EBLN2Q6P2I7 272 aa10.32□□□□□ -0.76
C9orf3-221ENST00000489562 PCNPQ8WW12 178 aaKnown RBP10.32□□□□□ -0.76
C9orf3-221ENST00000489562 VAX2Q9UIW0 290 aa10.32□□□□□ -0.76
C9orf3-221ENST00000489562 LOC102723971A0A1B0GUV8 181 aa10.31□□□□□ -0.76
C9orf3-221ENST00000489562 RBAKDNA6NC62 111 aa10.31□□□□□ -0.76
C9orf3-221ENST00000489562 RBFOX3A6NFN3 312 aa10.31□□□□□ -0.76
C9orf3-221ENST00000489562 C11orf94C9JXX5 98 aa10.31□□□□□ -0.76
C9orf3-221ENST00000489562 F6UZH7 168 aa10.31□□□□□ -0.76
C9orf3-221ENST00000489562 K7EQM0 130 aa10.31□□□□□ -0.76
C9orf3-221ENST00000489562 DUSP14O95147 198 aaKnown RBP10.31□□□□□ -0.76
C9orf3-221ENST00000489562 MEF2BQ02080 365 aaPredicted RBP10.31□□□□□ -0.76
C9orf3-221ENST00000489562 HAGHQ16775 308 aa10.31□□□□□ -0.76
C9orf3-221ENST00000489562 CCDC28AQ8IWP9 274 aa10.31□□□□□ -0.76
C9orf3-221ENST00000489562 Q8N1Y9 231 aa10.31□□□□□ -0.76
C9orf3-221ENST00000489562 OR10J6PQ8NGY7 276 aa10.31□□□□□ -0.76
C9orf3-221ENST00000489562 HIST1H2BAQ96A08 127 aa10.31□□□□□ -0.76
C9orf3-221ENST00000489562 FAM210AQ96ND0 272 aa10.31□□□□□ -0.76
C9orf3-221ENST00000489562 SAV1Q9H4B6 383 aaPredicted RBP10.31□□□□□ -0.76
C9orf3-221ENST00000489562 A0A0J9YX75 114 aa10.3□□□□□ -0.76
C9orf3-221ENST00000489562 ZNF705FA8MVS1 300 aaPredicted RBP10.3□□□□□ -0.76
C9orf3-221ENST00000489562 DIRC3C9JPN6 131 aa10.3□□□□□ -0.76
C9orf3-221ENST00000489562 NDUFS6O75380 124 aaKnown RBP10.3□□□□□ -0.76
C9orf3-221ENST00000489562 HLA-DRB4P13762 266 aa10.3□□□□□ -0.76
C9orf3-221ENST00000489562 ATP5G3P48201 142 aa10.3□□□□□ -0.76
C9orf3-221ENST00000489562 ZNF506Q5JVG8 444 aa10.3□□□□□ -0.76
C9orf3-221ENST00000489562 APRG1Q8IVJ8 170 aa10.3□□□□□ -0.76
C9orf3-221ENST00000489562 OR8A1Q8NGG7 326 aa10.3□□□□□ -0.76
C9orf3-221ENST00000489562 ATG101Q9BSB4 218 aa10.3□□□□□ -0.76
C9orf3-221ENST00000489562 EPDR1Q9UM22 224 aa10.3□□□□□ -0.76
C9orf3-221ENST00000489562 HLA-DRB4X5D2U9 266 aa10.3□□□□□ -0.76
C9orf3-221ENST00000489562 NOTCH1P46531 2555 aa10.3□□□□□ -0.76
C9orf3-221ENST00000489562 FBLL1A6NHQ2 334 aaKnown RBP10.29□□□□□ -0.76
C9orf3-221ENST00000489562 PDE6DO43924 150 aa10.29□□□□□ -0.76
C9orf3-221ENST00000489562 TCRAP04437 139 aa10.29□□□□□ -0.76
C9orf3-221ENST00000489562 ACTL10Q5JWF8 245 aa10.29□□□□□ -0.76
C9orf3-221ENST00000489562 STHQ8IWL8 128 aa10.29□□□□□ -0.76
C9orf3-221ENST00000489562 CYB561D1Q8N8Q1 229 aa10.29□□□□□ -0.76
C9orf3-221ENST00000489562 CLUHP3Q96NS8 147 aa10.29□□□□□ -0.76
C9orf3-221ENST00000489562 EIF5A2Q9GZV4 153 aaKnown RBP10.29□□□□□ -0.76
C9orf3-221ENST00000489562 NBEAL1Q6ZS30 2694 aa10.29□□□□□ -0.76
C9orf3-221ENST00000489562 H3BMM0 161 aa10.28□□□□□ -0.76
C9orf3-221ENST00000489562 PEX7O00628 323 aa10.28□□□□□ -0.76
C9orf3-221ENST00000489562 HIST1H1AQ02539 215 aaPredicted RBP10.28□□□□□ -0.76
C9orf3-221ENST00000489562 TOR2AQ5JU69 321 aa10.28□□□□□ -0.76
C9orf3-221ENST00000489562 GOLT1AQ6ZVE7 132 aa10.28□□□□□ -0.76
C9orf3-221ENST00000489562 DEFB125Q8N687 156 aa10.28□□□□□ -0.76
C9orf3-221ENST00000489562 SMDT1Q9H4I9 107 aa10.28□□□□□ -0.76
C9orf3-221ENST00000489562 SRD5A3Q9H8P0 318 aa10.28□□□□□ -0.76
C9orf3-221ENST00000489562 MED9Q9NWA0 146 aa10.28□□□□□ -0.76
C9orf3-221ENST00000489562 RPH3ALQ9UNE2 315 aa10.28□□□□□ -0.76
C9orf3-221ENST00000489562 RAB19A4D1S5 217 aa10.27□□□□□ -0.77
C9orf3-221ENST00000489562 KNCNA6PVL3 124 aa10.27□□□□□ -0.77
C9orf3-221ENST00000489562 A8MTW9 85 aa10.27□□□□□ -0.77
C9orf3-221ENST00000489562 A8MZ25 164 aa10.27□□□□□ -0.77
C9orf3-221ENST00000489562 PRAC2D3DTV9 90 aa10.27□□□□□ -0.77
C9orf3-221ENST00000489562 NPIPB6E9PJ23 425 aa10.27□□□□□ -0.77
C9orf3-221ENST00000489562 F6UB75 175 aa10.27□□□□□ -0.77
C9orf3-221ENST00000489562 GNG5P63218 68 aa10.27□□□□□ -0.77
C9orf3-221ENST00000489562 PEA15Q15121 130 aa10.27□□□□□ -0.77
C9orf3-221ENST00000489562 ZNF124Q15973 351 aa10.27□□□□□ -0.77
C9orf3-221ENST00000489562 TMEM78Q5T7P6 136 aa10.27□□□□□ -0.77
C9orf3-221ENST00000489562 C9orf47Q6ZRZ4 202 aa10.27□□□□□ -0.77
C9orf3-221ENST00000489562 C11orf52Q96A22 123 aa10.27□□□□□ -0.77
C9orf3-221ENST00000489562 LINC00477Q96M19 166 aa10.27□□□□□ -0.77
C9orf3-221ENST00000489562 RARRES2Q99969 163 aa10.27□□□□□ -0.77
C9orf3-221ENST00000489562 WFDC10AQ9H1F0 79 aa10.27□□□□□ -0.77
C9orf3-221ENST00000489562 TUBA4BQ9H853 241 aa10.27□□□□□ -0.77
C9orf3-221ENST00000489562 AURKAIP1Q9NWT8 199 aaPredicted RBP10.27□□□□□ -0.77
C9orf3-221ENST00000489562 IGKV2-40A0A087WW87 121 aaPredicted RBP10.26□□□□□ -0.77
C9orf3-221ENST00000489562 TMEM250H0YL14 139 aa10.26□□□□□ -0.77
C9orf3-221ENST00000489562 IGKV2D-40P01614 121 aaPredicted RBP10.26□□□□□ -0.77
C9orf3-221ENST00000489562 S100A9P06702 114 aaKnown RBP10.26□□□□□ -0.77
C9orf3-221ENST00000489562 AKR1C3P42330 323 aa10.26□□□□□ -0.77
C9orf3-221ENST00000489562 CNN1P51911 297 aaKnown RBP10.26□□□□□ -0.77
C9orf3-221ENST00000489562 DEFB1P60022 68 aa10.26□□□□□ -0.77
C9orf3-221ENST00000489562 GDF5OSQ5U4N7 250 aa10.26□□□□□ -0.77
C9orf3-221ENST00000489562 TRPT1Q86TN4 253 aaKnown RBP10.26□□□□□ -0.77
C9orf3-221ENST00000489562 TMEM75Q8N9X5 138 aa10.26□□□□□ -0.77
C9orf3-221ENST00000489562 OR4B1Q8NGF8 309 aa10.26□□□□□ -0.77
C9orf3-221ENST00000489562 ODF3Q96PU9 254 aa10.26□□□□□ -0.77
C9orf3-221ENST00000489562 PPP1R14DQ9NXH3 145 aa10.26□□□□□ -0.77
C9orf3-221ENST00000489562 LENEPQ9Y5L5 61 aa10.26□□□□□ -0.77
C9orf3-221ENST00000489562 TRBV7-9A0A0J9YWB2 115 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 257 ms