RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 RXFP4Q8TDU9 374 aa5.13□□□□□ -1.59
LIMA1-202ENST00000394943 C11orf68Q9H3H3 251 aaKnown RBP5.13□□□□□ -1.59
LIMA1-202ENST00000394943 MANBALQ9NQG1 85 aa5.13□□□□□ -1.59
LIMA1-202ENST00000394943 ZNF705FA8MVS1 300 aaPredicted RBP5.13□□□□□ -1.59
LIMA1-202ENST00000394943 DIRC3C9JPN6 131 aa5.13□□□□□ -1.59
LIMA1-202ENST00000394943 CRXO43186 299 aaPredicted RBP5.13□□□□□ -1.59
LIMA1-202ENST00000394943 ZNF705DP0CH99 300 aaPredicted RBP5.13□□□□□ -1.59
LIMA1-202ENST00000394943 ZNF705BP0CI00 300 aaPredicted RBP5.13□□□□□ -1.59
LIMA1-202ENST00000394943 CD81P60033 236 aa5.13□□□□□ -1.59
LIMA1-202ENST00000394943 Q6AWC8 147 aa5.13□□□□□ -1.59
LIMA1-202ENST00000394943 HSD17B11Q8NBQ5 300 aa5.13□□□□□ -1.59
LIMA1-202ENST00000394943 LINC00477Q96M19 166 aa5.13□□□□□ -1.59
LIMA1-202ENST00000394943 SMDT1Q9H4I9 107 aa5.13□□□□□ -1.59
LIMA1-202ENST00000394943 S100A9P06702 114 aaKnown RBP5.13□□□□□ -1.59
LIMA1-202ENST00000394943 ARL14EPLP0DKL9 152 aa5.13□□□□□ -1.59
LIMA1-202ENST00000394943 RNF183Q96D59 192 aa5.13□□□□□ -1.59
LIMA1-202ENST00000394943 DOK5Q9P104 306 aa5.13□□□□□ -1.59
LIMA1-202ENST00000394943 ALMS1Q8TCU4 4167 aa5.12□□□□□ -1.59
LIMA1-202ENST00000394943 HBE1P02100 147 aa5.12□□□□□ -1.59
LIMA1-202ENST00000394943 AKR1C8PQ5T2L2 129 aa5.12□□□□□ -1.59
LIMA1-202ENST00000394943 OR8A1Q8NGG7 326 aa5.12□□□□□ -1.59
LIMA1-202ENST00000394943 ZNF471Q9BX82 626 aaPredicted RBP5.12□□□□□ -1.59
LIMA1-202ENST00000394943 PYYP10082 97 aa5.12□□□□□ -1.59
LIMA1-202ENST00000394943 IFITM2Q01629 132 aa5.12□□□□□ -1.59
LIMA1-202ENST00000394943 LEMD1Q68G75 181 aa5.12□□□□□ -1.59
LIMA1-202ENST00000394943 LOC102724200A0A096LPH7 203 aaPredicted RBP5.12□□□□□ -1.59
LIMA1-202ENST00000394943 GGTLC3B5MD39 225 aa5.12□□□□□ -1.59
LIMA1-202ENST00000394943 ATP6V1G1O75348 118 aa5.12□□□□□ -1.59
LIMA1-202ENST00000394943 TSPOP30536 169 aa5.12□□□□□ -1.59
LIMA1-202ENST00000394943 BLOC1S1P78537 153 aa5.12□□□□□ -1.59
LIMA1-202ENST00000394943 LINC00612Q8N6U2 182 aa5.12□□□□□ -1.59
LIMA1-202ENST00000394943 C2CD4CQ8TF44 421 aa5.12□□□□□ -1.59
LIMA1-202ENST00000394943 HIST1H2BAQ96A08 127 aa5.12□□□□□ -1.59
LIMA1-202ENST00000394943 C18orf15Q96N68 181 aa5.12□□□□□ -1.59
LIMA1-202ENST00000394943 Q9H3A6 140 aa5.12□□□□□ -1.59
LIMA1-202ENST00000394943 SRD5A3Q9H8P0 318 aa5.12□□□□□ -1.59
LIMA1-202ENST00000394943 ZNF492Q9P255 531 aa5.12□□□□□ -1.59
LIMA1-202ENST00000394943 MAP1LC3B2A6NCE7 125 aa5.11□□□□□ -1.59
LIMA1-202ENST00000394943 ZNF575Q86XF7 245 aa5.11□□□□□ -1.59
LIMA1-202ENST00000394943 C5orf17Q8NAS9 161 aa5.11□□□□□ -1.59
LIMA1-202ENST00000394943 PRR25Q96S07 402 aa5.11□□□□□ -1.59
LIMA1-202ENST00000394943 MAP1LC3BQ9GZQ8 125 aa5.11□□□□□ -1.59
LIMA1-202ENST00000394943 YTHDF2Q9Y5A9 579 aaKnown RBP5.11□□□□□ -1.59
LIMA1-202ENST00000394943 SMIM9A6NGZ8 99 aa5.11□□□□□ -1.59
LIMA1-202ENST00000394943 BOLA2-SMG1P6H3BVE0 249 aa5.11□□□□□ -1.59
LIMA1-202ENST00000394943 CXCL1P09341 107 aa5.11□□□□□ -1.59
LIMA1-202ENST00000394943 CT45A10P0DMU9 189 aa5.11□□□□□ -1.59
LIMA1-202ENST00000394943 APOC4P55056 127 aa5.11□□□□□ -1.59
LIMA1-202ENST00000394943 ZNF506Q5JVG8 444 aa5.11□□□□□ -1.59
LIMA1-202ENST00000394943 FAM122CQ6P4D5 195 aa5.11□□□□□ -1.59
LIMA1-202ENST00000394943 EIF4E3Q8N5X7 224 aaKnown RBP5.11□□□□□ -1.59
LIMA1-202ENST00000394943 RPUSD4Q96CM3 377 aaKnown RBP5.11□□□□□ -1.59
LIMA1-202ENST00000394943 NDUFAF3Q9BU61 184 aa5.11□□□□□ -1.59
LIMA1-202ENST00000394943 MLST8Q9BVC4 326 aa5.11□□□□□ -1.59
LIMA1-202ENST00000394943 IGHV3OR16-8A0A075B7F1 116 aa5.11□□□□□ -1.59
LIMA1-202ENST00000394943 A0A1W2PPV4 95 aa5.11□□□□□ -1.59
LIMA1-202ENST00000394943 ZNF324O75467 553 aaPredicted RBP5.11□□□□□ -1.59
LIMA1-202ENST00000394943 FRMD6-AS1P0C7T7 363 aa5.11□□□□□ -1.59
LIMA1-202ENST00000394943 HAGHQ16775 308 aa5.11□□□□□ -1.59
LIMA1-202ENST00000394943 ZFAND2AQ8N6M9 145 aa5.11□□□□□ -1.59
LIMA1-202ENST00000394943 ZNF680Q8NEM1 530 aa5.11□□□□□ -1.59
LIMA1-202ENST00000394943 LY96Q9Y6Y9 160 aa5.11□□□□□ -1.59
LIMA1-202ENST00000394943 IGHV3-66A0A0C4DH42 116 aa5.1□□□□□ -1.59
LIMA1-202ENST00000394943 DEFB131AP59861 70 aa5.1□□□□□ -1.59
LIMA1-202ENST00000394943 TDRG1Q3Y452 100 aa5.1□□□□□ -1.59
LIMA1-202ENST00000394943 GDF5OSQ5U4N7 250 aa5.1□□□□□ -1.59
LIMA1-202ENST00000394943 ZNF767PQ75MW2 155 aa5.1□□□□□ -1.59
LIMA1-202ENST00000394943 DEFB125Q8N687 156 aa5.1□□□□□ -1.59
LIMA1-202ENST00000394943 IGF2BP2-AS1Q96M15 143 aa5.1□□□□□ -1.59
LIMA1-202ENST00000394943 LYSTQ99698 3801 aa5.1□□□□□ -1.59
LIMA1-202ENST00000394943 ATG101Q9BSB4 218 aa5.1□□□□□ -1.59
LIMA1-202ENST00000394943 EPDR1Q9UM22 224 aa5.1□□□□□ -1.59
LIMA1-202ENST00000394943 LOC102723971A0A1B0GUV8 181 aa5.1□□□□□ -1.59
LIMA1-202ENST00000394943 LTAP01374 205 aa5.1□□□□□ -1.59
LIMA1-202ENST00000394943 TCRAP04437 139 aa5.1□□□□□ -1.59
LIMA1-202ENST00000394943 UBE2L3P68036 154 aaKnown RBP5.1□□□□□ -1.59
LIMA1-202ENST00000394943 TMEM183BQ1AE95 376 aa5.1□□□□□ -1.59
LIMA1-202ENST00000394943 ANXA2RQ3ZCQ2 193 aa5.1□□□□□ -1.59
LIMA1-202ENST00000394943 TMEM256Q8N2U0 113 aa5.1□□□□□ -1.59
LIMA1-202ENST00000394943 C16orf92Q96LL3 132 aa5.1□□□□□ -1.59
LIMA1-202ENST00000394943 OVOL2Q9BRP0 275 aa5.1□□□□□ -1.59
LIMA1-202ENST00000394943 PRAC2D3DTV9 90 aa5.1□□□□□ -1.59
LIMA1-202ENST00000394943 LEPP41159 167 aa5.1□□□□□ -1.59
LIMA1-202ENST00000394943 CLLU1Q5K131 121 aa5.1□□□□□ -1.59
LIMA1-202ENST00000394943 PIK3CD-AS1Q5SR53 167 aa5.1□□□□□ -1.59
LIMA1-202ENST00000394943 SLC25A22Q9H936 323 aa5.1□□□□□ -1.59
LIMA1-202ENST00000394943 X6R8D5 127 aa5.1□□□□□ -1.59
LIMA1-202ENST00000394943 IGHV3-49A0A0A0MS15 119 aa5.09□□□□□ -1.59
LIMA1-202ENST00000394943 DNASE2O00115 360 aaPredicted RBP5.09□□□□□ -1.59
LIMA1-202ENST00000394943 H2AFB1P0C5Y9 115 aa5.09□□□□□ -1.59
LIMA1-202ENST00000394943 FMC1Q96HJ9 113 aa5.09□□□□□ -1.59
LIMA1-202ENST00000394943 C1QTNF4Q9BXJ3 329 aa5.09□□□□□ -1.59
LIMA1-202ENST00000394943 CSTL1Q9H114 145 aa5.09□□□□□ -1.59
LIMA1-202ENST00000394943 PLAC8L1A1L4L8 177 aa5.09□□□□□ -1.59
LIMA1-202ENST00000394943 SPRY2O43597 315 aa5.09□□□□□ -1.59
LIMA1-202ENST00000394943 PSMG4Q5JS54 123 aa5.09□□□□□ -1.59
LIMA1-202ENST00000394943 F6UZH7 168 aa5.09□□□□□ -1.6
LIMA1-202ENST00000394943 TMEM250H0YL14 139 aa5.09□□□□□ -1.6
LIMA1-202ENST00000394943 OR10J4P0C629 311 aa5.09□□□□□ -1.6
LIMA1-202ENST00000394943 TAS2R60P59551 318 aa5.09□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms