RNA–Protein interactions for RNA: ENST00000378679.7

SHROOM1-203, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SHROOM1, Length 4,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-203ENST00000378679 LSM4Q9Y4Z0 139 aaKnown RBP11.3□□□□□ -0.6
SHROOM1-203ENST00000378679 TRAV9-1A0A075B6T8 112 aa11.3□□□□□ -0.6
SHROOM1-203ENST00000378679 PPIFP30405 207 aaKnown RBP11.3□□□□□ -0.6
SHROOM1-203ENST00000378679 PIP4P2Q8N4L2 257 aa11.3□□□□□ -0.6
SHROOM1-203ENST00000378679 ZNF114Q8NC26 417 aa11.3□□□□□ -0.6
SHROOM1-203ENST00000378679 MYOZ3Q8TDC0 251 aa11.3□□□□□ -0.6
SHROOM1-203ENST00000378679 SHANK2-AS3Q9BTD1 123 aa11.3□□□□□ -0.6
SHROOM1-203ENST00000378679 MTORP42345 2549 aa11.3□□□□□ -0.6
SHROOM1-203ENST00000378679 NCKAP5O14513 1909 aa11.29□□□□□ -0.6
SHROOM1-203ENST00000378679 ACTL10Q5JWF8 245 aa11.29□□□□□ -0.6
SHROOM1-203ENST00000378679 SYT8Q8NBV8 401 aa11.29□□□□□ -0.6
SHROOM1-203ENST00000378679 ASCL2Q99929 193 aa11.29□□□□□ -0.6
SHROOM1-203ENST00000378679 MAP1LC3AQ9H492 121 aa11.29□□□□□ -0.6
SHROOM1-203ENST00000378679 F2Z2F3 143 aa11.29□□□□□ -0.6
SHROOM1-203ENST00000378679 OVOL3O00110 214 aa11.29□□□□□ -0.6
SHROOM1-203ENST00000378679 ZNF324O75467 553 aaPredicted RBP11.29□□□□□ -0.6
SHROOM1-203ENST00000378679 ODF3L1Q8IXM7 274 aa11.29□□□□□ -0.6
SHROOM1-203ENST00000378679 C18orf15Q96N68 181 aa11.29□□□□□ -0.6
SHROOM1-203ENST00000378679 AP5S1Q9NUS5 200 aa11.29□□□□□ -0.6
SHROOM1-203ENST00000378679 TRBV20OR9-2A0A075B6H5 130 aa11.28□□□□□ -0.6
SHROOM1-203ENST00000378679 C19orf84I3L1E1 186 aa11.28□□□□□ -0.6
SHROOM1-203ENST00000378679 HOXB4P17483 251 aaPredicted RBP11.28□□□□□ -0.6
SHROOM1-203ENST00000378679 RNASE4P34096 147 aaKnown RBP11.28□□□□□ -0.6
SHROOM1-203ENST00000378679 NIT1Q86X76 327 aa11.28□□□□□ -0.6
SHROOM1-203ENST00000378679 Q8TAT8 98 aa11.28□□□□□ -0.6
SHROOM1-203ENST00000378679 TMEM70Q9BUB7 260 aa11.28□□□□□ -0.6
SHROOM1-203ENST00000378679 PEMTQ9UBM1 199 aa11.28□□□□□ -0.6
SHROOM1-203ENST00000378679 IGLC1P0CG04 106 aa11.28□□□□□ -0.6
SHROOM1-203ENST00000378679 ZFP36P26651 326 aaKnown RBP11.28□□□□□ -0.6
SHROOM1-203ENST00000378679 C3orf79P0CE67 100 aa11.28□□□□□ -0.6
SHROOM1-203ENST00000378679 YPEL3P61236 119 aaPredicted RBP11.28□□□□□ -0.6
SHROOM1-203ENST00000378679 PRR20EP86478 221 aa11.28□□□□□ -0.6
SHROOM1-203ENST00000378679 PRR20CP86479 221 aa11.28□□□□□ -0.6
SHROOM1-203ENST00000378679 PRR20DP86480 221 aa11.28□□□□□ -0.6
SHROOM1-203ENST00000378679 PRR20BP86481 221 aa11.28□□□□□ -0.6
SHROOM1-203ENST00000378679 PRR20AP86496 221 aa11.28□□□□□ -0.6
SHROOM1-203ENST00000378679 Q6AWC8 147 aa11.28□□□□□ -0.6
SHROOM1-203ENST00000378679 C12orf54Q6X4T0 127 aa11.28□□□□□ -0.6
SHROOM1-203ENST00000378679 WFDC12Q8WWY7 111 aa11.28□□□□□ -0.6
SHROOM1-203ENST00000378679 SORL1Q92673 2214 aa11.27□□□□□ -0.6
SHROOM1-203ENST00000378679 NUPR1O60356 82 aa11.27□□□□□ -0.6
SHROOM1-203ENST00000378679 TSKUQ8WUA8 353 aa11.27□□□□□ -0.6
SHROOM1-203ENST00000378679 COL5A1P20908 1838 aaPredicted RBP11.27□□□□□ -0.61
SHROOM1-203ENST00000378679 ZNF688P0C7X2 276 aa11.27□□□□□ -0.61
SHROOM1-203ENST00000378679 ASIPP42127 132 aa11.27□□□□□ -0.61
SHROOM1-203ENST00000378679 MPV17L2Q567V2 206 aa11.27□□□□□ -0.61
SHROOM1-203ENST00000378679 AMMECR1LQ6DCA0 310 aa11.27□□□□□ -0.61
SHROOM1-203ENST00000378679 hDV102S1A0JD36 115 aa11.27□□□□□ -0.61
SHROOM1-203ENST00000378679 ZNF138P52744 262 aa11.27□□□□□ -0.61
SHROOM1-203ENST00000378679 Q6ZWC4 215 aa11.27□□□□□ -0.61
SHROOM1-203ENST00000378679 JMJD8Q96S16 334 aa11.27□□□□□ -0.61
SHROOM1-203ENST00000378679 SOX21Q9Y651 276 aaPredicted RBP11.27□□□□□ -0.61
SHROOM1-203ENST00000378679 FAM223BA6NKX1 122 aa11.26□□□□□ -0.61
SHROOM1-203ENST00000378679 FOXL1Q12952 345 aa11.26□□□□□ -0.61
SHROOM1-203ENST00000378679 SAMD13Q5VXD3 122 aa11.26□□□□□ -0.61
SHROOM1-203ENST00000378679 FAM223AQ8IWN6 122 aa11.26□□□□□ -0.61
SHROOM1-203ENST00000378679 MEGF9Q9H1U4 602 aa11.26□□□□□ -0.61
SHROOM1-203ENST00000378679 PRRC2AP48634 2157 aaKnown RBP11.26□□□□□ -0.61
SHROOM1-203ENST00000378679 SFTA2Q6UW10 78 aa11.26□□□□□ -0.61
SHROOM1-203ENST00000378679 Q8N7P7 452 aa11.26□□□□□ -0.61
SHROOM1-203ENST00000378679 C10orf105Q8TEF2 133 aa11.26□□□□□ -0.61
SHROOM1-203ENST00000378679 RHPN1-AS1Q9BWJ2 59 aa11.26□□□□□ -0.61
SHROOM1-203ENST00000378679 KLK15Q9H2R5 256 aa11.26□□□□□ -0.61
SHROOM1-203ENST00000378679 MGAQ8IWI9 3026 aa11.26□□□□□ -0.61
SHROOM1-203ENST00000378679 GGTLC3B5MD39 225 aa11.26□□□□□ -0.61
SHROOM1-203ENST00000378679 PSMG4Q5JS54 123 aa11.26□□□□□ -0.61
SHROOM1-203ENST00000378679 PRELID3AQ96N28 172 aa11.26□□□□□ -0.61
SHROOM1-203ENST00000378679 A6NDN8 102 aa11.25□□□□□ -0.61
SHROOM1-203ENST00000378679 BRWD1-AS2P59051 145 aa11.25□□□□□ -0.61
SHROOM1-203ENST00000378679 FXYD7P58549 80 aa11.25□□□□□ -0.61
SHROOM1-203ENST00000378679 SSBP2P81877 361 aaPredicted RBP11.25□□□□□ -0.61
SHROOM1-203ENST00000378679 OR10AG1Q8NH19 301 aa11.25□□□□□ -0.61
SHROOM1-203ENST00000378679 PEF1Q9UBV8 284 aaKnown RBP11.25□□□□□ -0.61
SHROOM1-203ENST00000378679 CENPVL3A0A0U1RRI6 287 aa11.25□□□□□ -0.61
SHROOM1-203ENST00000378679 H3BUT2 72 aa11.25□□□□□ -0.61
SHROOM1-203ENST00000378679 LYPD1Q8N2G4 141 aa11.25□□□□□ -0.61
SHROOM1-203ENST00000378679 LCNL1Q6ZST4 164 aa11.25□□□□□ -0.61
SHROOM1-203ENST00000378679 ZNF56Q15929 161 aa11.24□□□□□ -0.61
SHROOM1-203ENST00000378679 IGHV4-38-2P0DP08 117 aa11.24□□□□□ -0.61
SHROOM1-203ENST00000378679 RRN3P1Q2M238 152 aa11.24□□□□□ -0.61
SHROOM1-203ENST00000378679 LY96Q9Y6Y9 160 aa11.24□□□□□ -0.61
SHROOM1-203ENST00000378679 SYNJ2BPP57105 145 aa11.24□□□□□ -0.61
SHROOM1-203ENST00000378679 VWC2Q2TAL6 325 aa11.24□□□□□ -0.61
SHROOM1-203ENST00000378679 C9orf139Q6ZV77 190 aa11.24□□□□□ -0.61
SHROOM1-203ENST00000378679 STPG4Q8N801 248 aa11.24□□□□□ -0.61
SHROOM1-203ENST00000378679 A0A087X0K7 114 aa11.23□□□□□ -0.61
SHROOM1-203ENST00000378679 TRAV21A0A0B4J279 112 aa11.23□□□□□ -0.61
SHROOM1-203ENST00000378679 E7EUB6 86 aa11.23□□□□□ -0.61
SHROOM1-203ENST00000378679 SCGB1C2P0DMR2 95 aa11.23□□□□□ -0.61
SHROOM1-203ENST00000378679 OVOL1O14753 267 aa11.23□□□□□ -0.61
SHROOM1-203ENST00000378679 CDSNQ15517 529 aa11.23□□□□□ -0.61
SHROOM1-203ENST00000378679 THAP8Q8NA92 274 aa11.23□□□□□ -0.61
SHROOM1-203ENST00000378679 LYPD6BQ8NI32 183 aa11.23□□□□□ -0.61
SHROOM1-203ENST00000378679 FN1P02751 2386 aaKnown RBP11.23□□□□□ -0.61
SHROOM1-203ENST00000378679 J3QLI3 93 aa11.23□□□□□ -0.61
SHROOM1-203ENST00000378679 APOHP02749 345 aaPredicted RBP11.23□□□□□ -0.61
SHROOM1-203ENST00000378679 CD7P09564 240 aa11.23□□□□□ -0.61
SHROOM1-203ENST00000378679 DEFB112Q30KQ8 113 aa11.23□□□□□ -0.61
SHROOM1-203ENST00000378679 SLC25A2Q9BXI2 301 aa11.23□□□□□ -0.61
SHROOM1-203ENST00000378679 DAZ1Q9NQZ3 744 aaKnown RBP11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms