RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 Q8TAT8 98 aa12.84□□□□□ -0.35
SDC4-201ENST00000372733 GAGE10A6NGK3 116 aa12.84□□□□□ -0.35
SDC4-201ENST00000372733 GNG7O60262 68 aa12.84□□□□□ -0.35
SDC4-201ENST00000372733 NPYP01303 97 aa12.84□□□□□ -0.35
SDC4-201ENST00000372733 HBDP02042 147 aa12.84□□□□□ -0.35
SDC4-201ENST00000372733 GFRALQ6UXV0 394 aa12.84□□□□□ -0.35
SDC4-201ENST00000372733 BOD1L2Q8IYS8 172 aa12.84□□□□□ -0.35
SDC4-201ENST00000372733 DPF1Q92782 380 aa12.84□□□□□ -0.35
SDC4-201ENST00000372733 ONECUT1Q9UBC0 465 aa12.84□□□□□ -0.35
SDC4-201ENST00000372733 LY6LH3BQJ8 138 aa12.83□□□□□ -0.36
SDC4-201ENST00000372733 SMAD7O15105 426 aaKnown RBP12.83□□□□□ -0.36
SDC4-201ENST00000372733 SAP30O75446 220 aa12.83□□□□□ -0.36
SDC4-201ENST00000372733 CSMD1Q96PZ7 3565 aa12.83□□□□□ -0.36
SDC4-201ENST00000372733 PIEZO2Q9H5I5 2752 aa12.83□□□□□ -0.36
SDC4-201ENST00000372733 PAX8Q06710 450 aa12.83□□□□□ -0.36
SDC4-201ENST00000372733 ARL6IP6Q8N6S5 226 aa12.83□□□□□ -0.36
SDC4-201ENST00000372733 JKAMPQ9P055 326 aa12.83□□□□□ -0.36
SDC4-201ENST00000372733 POLEQ07864 2286 aa12.82□□□□□ -0.36
SDC4-201ENST00000372733 H3BUT2 72 aa12.82□□□□□ -0.36
SDC4-201ENST00000372733 PRSS57Q6UWY2 283 aa12.82□□□□□ -0.36
SDC4-201ENST00000372733 PCP2Q8IVA1 136 aa12.82□□□□□ -0.36
SDC4-201ENST00000372733 OR1N2Q8NGR9 330 aa12.82□□□□□ -0.36
SDC4-201ENST00000372733 TMEM190Q8WZ59 177 aa12.82□□□□□ -0.36
SDC4-201ENST00000372733 SRSF8Q9BRL6 282 aaKnown RBP12.82□□□□□ -0.36
SDC4-201ENST00000372733 ZNF318Q5VUA4 2279 aa12.82□□□□□ -0.36
SDC4-201ENST00000372733 NBR2O15453 112 aa12.82□□□□□ -0.36
SDC4-201ENST00000372733 EGR2P11161 476 aaPredicted RBP12.82□□□□□ -0.36
SDC4-201ENST00000372733 NMUP48645 174 aa12.82□□□□□ -0.36
SDC4-201ENST00000372733 KIR3DS1Q14943 382 aa12.82□□□□□ -0.36
SDC4-201ENST00000372733 IGFL4Q6B9Z1 124 aa12.82□□□□□ -0.36
SDC4-201ENST00000372733 UFSP1Q6NVU6 142 aa12.82□□□□□ -0.36
SDC4-201ENST00000372733 IFI27L1Q96BM0 104 aa12.82□□□□□ -0.36
SDC4-201ENST00000372733 A1L4Q6 167 aa12.81□□□□□ -0.36
SDC4-201ENST00000372733 C9orf118A6NHY6 69 aa12.81□□□□□ -0.36
SDC4-201ENST00000372733 IGHV3-23P01764 117 aa12.81□□□□□ -0.36
SDC4-201ENST00000372733 CKS2P33552 79 aa12.81□□□□□ -0.36
SDC4-201ENST00000372733 ZNF80P51504 273 aaPredicted RBP12.81□□□□□ -0.36
SDC4-201ENST00000372733 PDE6HQ13956 83 aa12.81□□□□□ -0.36
SDC4-201ENST00000372733 AP1S3Q96PC3 154 aa12.81□□□□□ -0.36
SDC4-201ENST00000372733 ACACAQ13085 2346 aa12.81□□□□□ -0.36
SDC4-201ENST00000372733 A6NDN8 102 aa12.81□□□□□ -0.36
SDC4-201ENST00000372733 K7ERU9 68 aa12.81□□□□□ -0.36
SDC4-201ENST00000372733 HSD52Q0P140 79 aa12.81□□□□□ -0.36
SDC4-201ENST00000372733 TWIST1Q15672 202 aa12.81□□□□□ -0.36
SDC4-201ENST00000372733 DKK2Q9UBU2 259 aa12.81□□□□□ -0.36
SDC4-201ENST00000372733 PTPRZ1P23471 2315 aaPredicted RBP12.8□□□□□ -0.36
SDC4-201ENST00000372733 H3BRM9 83 aa12.8□□□□□ -0.36
SDC4-201ENST00000372733 RAB37Q96AX2 223 aa12.8□□□□□ -0.36
SDC4-201ENST00000372733 C18orf15Q96N68 181 aa12.8□□□□□ -0.36
SDC4-201ENST00000372733 RNF5Q99942 180 aa12.8□□□□□ -0.36
SDC4-201ENST00000372733 RAB1BQ9H0U4 201 aa12.8□□□□□ -0.36
SDC4-201ENST00000372733 F8W735 103 aaPredicted RBP12.8□□□□□ -0.36
SDC4-201ENST00000372733 HLA-DMBP28068 263 aa12.8□□□□□ -0.36
SDC4-201ENST00000372733 TM4SF20Q53R12 229 aa12.8□□□□□ -0.36
SDC4-201ENST00000372733 ADAMTSL5Q6ZMM2 481 aa12.8□□□□□ -0.36
SDC4-201ENST00000372733 SMIM15Q7Z3B0 74 aa12.8□□□□□ -0.36
SDC4-201ENST00000372733 FER1L6-AS1Q8NA97 138 aa12.8□□□□□ -0.36
SDC4-201ENST00000372733 FANCD2OSQ96PS1 177 aa12.8□□□□□ -0.36
SDC4-201ENST00000372733 PRR25Q96S07 402 aa12.8□□□□□ -0.36
SDC4-201ENST00000372733 MEGF9Q9H1U4 602 aa12.8□□□□□ -0.36
SDC4-201ENST00000372733 NDUFS7O75251 213 aa12.79□□□□□ -0.36
SDC4-201ENST00000372733 VGLL1Q99990 258 aa12.79□□□□□ -0.36
SDC4-201ENST00000372733 MSRB1Q9NZV6 116 aa12.79□□□□□ -0.36
SDC4-201ENST00000372733 NPIPB5A8MRT5 1133 aa12.79□□□□□ -0.36
SDC4-201ENST00000372733 GAS8-AS1O95177 125 aa12.79□□□□□ -0.36
SDC4-201ENST00000372733 KLRD1Q13241 179 aa12.79□□□□□ -0.36
SDC4-201ENST00000372733 OR9G4Q8NGQ1 327 aa12.79□□□□□ -0.36
SDC4-201ENST00000372733 IGHV3OR16-8A0A075B7F1 116 aa12.78□□□□□ -0.36
SDC4-201ENST00000372733 A0A0G2JLM5 398 aa12.78□□□□□ -0.36
SDC4-201ENST00000372733 S100A7P31151 101 aa12.78□□□□□ -0.36
SDC4-201ENST00000372733 HES1Q14469 280 aa12.78□□□□□ -0.36
SDC4-201ENST00000372733 GTF2H5Q6ZYL4 71 aa12.78□□□□□ -0.36
SDC4-201ENST00000372733 CFHR4Q92496 578 aa12.78□□□□□ -0.36
SDC4-201ENST00000372733 ARHGAP32A7KAX9 2087 aa12.78□□□□□ -0.36
SDC4-201ENST00000372733 DCHS2Q6V1P9 2916 aa12.78□□□□□ -0.36
SDC4-201ENST00000372733 IGLV11-55A0A075B6I3 123 aa12.78□□□□□ -0.36
SDC4-201ENST00000372733 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.78□□□□□ -0.36
SDC4-201ENST00000372733 NDPQ00604 133 aa12.78□□□□□ -0.36
SDC4-201ENST00000372733 PRR30Q53SZ7 412 aaPredicted RBP12.78□□□□□ -0.36
SDC4-201ENST00000372733 B9A039 149 aa12.77□□□□□ -0.36
SDC4-201ENST00000372733 K7EP34 96 aa12.77□□□□□ -0.36
SDC4-201ENST00000372733 MFAP4P55083 255 aa12.77□□□□□ -0.36
SDC4-201ENST00000372733 ZNF292O60281 2723 aa12.77□□□□□ -0.37
SDC4-201ENST00000372733 IGLC6P0CF74 106 aa12.77□□□□□ -0.37
SDC4-201ENST00000372733 ABHD17AQ96GS6 310 aa12.77□□□□□ -0.37
SDC4-201ENST00000372733 LY6HO94772 140 aa12.76□□□□□ -0.37
SDC4-201ENST00000372733 Q8NA96 180 aa12.76□□□□□ -0.37
SDC4-201ENST00000372733 LRBAP50851 2863 aa12.76□□□□□ -0.37
SDC4-201ENST00000372733 NDUFA3O95167 84 aa12.76□□□□□ -0.37
SDC4-201ENST00000372733 RIPPLY3P57055 190 aa12.76□□□□□ -0.37
SDC4-201ENST00000372733 C5orf64Q2M2E5 130 aa12.76□□□□□ -0.37
SDC4-201ENST00000372733 ZNF575Q86XF7 245 aa12.76□□□□□ -0.37
SDC4-201ENST00000372733 OR4X2Q8NGF9 303 aa12.76□□□□□ -0.37
SDC4-201ENST00000372733 RNF185Q96GF1 192 aa12.76□□□□□ -0.37
SDC4-201ENST00000372733 TTTY13Q9BZ97 58 aa12.76□□□□□ -0.37
SDC4-201ENST00000372733 C21orf62Q9NYP8 219 aa12.76□□□□□ -0.37
SDC4-201ENST00000372733 DPM3Q9P2X0 92 aa12.76□□□□□ -0.37
SDC4-201ENST00000372733 IGHV3-35A0A0C4DH35 117 aa12.75□□□□□ -0.37
SDC4-201ENST00000372733 CD3EP07766 207 aa12.75□□□□□ -0.37
SDC4-201ENST00000372733 RPL7P18124 248 aaKnown RBP12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 260.2 ms