RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 RNF185Q96GF1 192 aa5.33□□□□□ -1.56
VPS39-202ENST00000348544 LOC400499M0QZD8 3231 aa5.33□□□□□ -1.56
VPS39-202ENST00000348544 WDFY4Q6ZS81 3184 aa5.33□□□□□ -1.56
VPS39-202ENST00000348544 AGRNO00468 2067 aa5.33□□□□□ -1.56
VPS39-202ENST00000348544 LINC01546A6NGU7 62 aa5.33□□□□□ -1.56
VPS39-202ENST00000348544 K7EQM0 130 aa5.33□□□□□ -1.56
VPS39-202ENST00000348544 IGKCP01834 107 aa5.33□□□□□ -1.56
VPS39-202ENST00000348544 IGHG3P01860 377 aa5.33□□□□□ -1.56
VPS39-202ENST00000348544 PPIFP30405 207 aaKnown RBP5.33□□□□□ -1.56
VPS39-202ENST00000348544 GLRXP35754 106 aa5.33□□□□□ -1.56
VPS39-202ENST00000348544 RPL27AP46776 148 aaKnown RBP5.33□□□□□ -1.56
VPS39-202ENST00000348544 ZC2HC1BQ5TFG8 222 aa5.33□□□□□ -1.56
VPS39-202ENST00000348544 MRAP2Q96G30 205 aa5.33□□□□□ -1.56
VPS39-202ENST00000348544 FER1L6-AS2Q96M78 137 aa5.33□□□□□ -1.56
VPS39-202ENST00000348544 FOXC2Q99958 501 aa5.33□□□□□ -1.56
VPS39-202ENST00000348544 SHANK2-AS3Q9BTD1 123 aa5.33□□□□□ -1.56
VPS39-202ENST00000348544 MSRB1Q9NZV6 116 aa5.33□□□□□ -1.56
VPS39-202ENST00000348544 DCHS1Q96JQ0 3298 aa5.33□□□□□ -1.56
VPS39-202ENST00000348544 TEX22C9J3V5 150 aa5.32□□□□□ -1.56
VPS39-202ENST00000348544 H3BRN7 92 aa5.32□□□□□ -1.56
VPS39-202ENST00000348544 ENSAO43768 121 aaKnown RBP5.32□□□□□ -1.56
VPS39-202ENST00000348544 THBDP07204 575 aa5.32□□□□□ -1.56
VPS39-202ENST00000348544 FCER1GP30273 86 aa5.32□□□□□ -1.56
VPS39-202ENST00000348544 SRSF1Q07955 248 aaKnown RBP eCLIP5.32□□□□□ -1.56
VPS39-202ENST00000348544 FHL3Q13643 280 aa5.32□□□□□ -1.56
VPS39-202ENST00000348544 GAGE13Q4V321 117 aa5.32□□□□□ -1.56
VPS39-202ENST00000348544 TEX36Q5VZQ5 186 aa5.32□□□□□ -1.56
VPS39-202ENST00000348544 ZNF502Q8TBZ5 544 aa5.32□□□□□ -1.56
VPS39-202ENST00000348544 PSMG3-AS1Q96PY0 264 aa5.32□□□□□ -1.56
VPS39-202ENST00000348544 SCNM1Q9BWG6 230 aa5.32□□□□□ -1.56
VPS39-202ENST00000348544 TMEM8BA6NDV4 472 aa5.32□□□□□ -1.56
VPS39-202ENST00000348544 I3L2K1 104 aa5.32□□□□□ -1.56
VPS39-202ENST00000348544 K7EM74 188 aa5.32□□□□□ -1.56
VPS39-202ENST00000348544 RBP4P02753 201 aa5.32□□□□□ -1.56
VPS39-202ENST00000348544 CRYGBP07316 175 aa5.32□□□□□ -1.56
VPS39-202ENST00000348544 PRSS1P07477 247 aa5.32□□□□□ -1.56
VPS39-202ENST00000348544 EGR2P11161 476 aaPredicted RBP5.32□□□□□ -1.56
VPS39-202ENST00000348544 TWIST1Q15672 202 aa5.32□□□□□ -1.56
VPS39-202ENST00000348544 KLF17Q5JT82 389 aaPredicted RBP5.32□□□□□ -1.56
VPS39-202ENST00000348544 FAM169BQ8N8A8 192 aa5.32□□□□□ -1.56
VPS39-202ENST00000348544 TMEM178AQ8NBL3 297 aa5.32□□□□□ -1.56
VPS39-202ENST00000348544 CDIP1Q9H305 208 aa5.32□□□□□ -1.56
VPS39-202ENST00000348544 GEMIN7Q9H840 131 aaKnown RBP5.32□□□□□ -1.56
VPS39-202ENST00000348544 DPM2O94777 84 aa5.31□□□□□ -1.56
VPS39-202ENST00000348544 IGLC6P0CF74 106 aa5.31□□□□□ -1.56
VPS39-202ENST00000348544 GATA1P15976 413 aaPredicted RBP5.31□□□□□ -1.56
VPS39-202ENST00000348544 ZNF80P51504 273 aaPredicted RBP5.31□□□□□ -1.56
VPS39-202ENST00000348544 CCL11P51671 97 aa5.31□□□□□ -1.56
VPS39-202ENST00000348544 RRN3P1Q2M238 152 aa5.31□□□□□ -1.56
VPS39-202ENST00000348544 RASL11BQ9BPW5 248 aa5.31□□□□□ -1.56
VPS39-202ENST00000348544 MAP1LC3AQ9H492 121 aa5.31□□□□□ -1.56
VPS39-202ENST00000348544 ZNF318Q5VUA4 2279 aa5.31□□□□□ -1.56
VPS39-202ENST00000348544 IGKV2-40A0A087WW87 121 aaPredicted RBP5.31□□□□□ -1.56
VPS39-202ENST00000348544 TRAV40A0A0B4J280 105 aa5.31□□□□□ -1.56
VPS39-202ENST00000348544 IGKV2D-40P01614 121 aaPredicted RBP5.31□□□□□ -1.56
VPS39-202ENST00000348544 HLA-DRB4P13762 266 aa5.31□□□□□ -1.56
VPS39-202ENST00000348544 SMCPP49901 116 aaPredicted RBP5.31□□□□□ -1.56
VPS39-202ENST00000348544 LCNL1Q6ZST4 164 aa5.31□□□□□ -1.56
VPS39-202ENST00000348544 LYPD1Q8N2G4 141 aa5.31□□□□□ -1.56
VPS39-202ENST00000348544 LINC00311Q8N616 119 aa5.31□□□□□ -1.56
VPS39-202ENST00000348544 TMEM158Q8WZ71 300 aa5.31□□□□□ -1.56
VPS39-202ENST00000348544 MRPL35Q9NZE8 188 aaKnown RBP5.31□□□□□ -1.56
VPS39-202ENST00000348544 PROCRQ9UNN8 238 aa5.31□□□□□ -1.56
VPS39-202ENST00000348544 HLA-DRB4X5D2U9 266 aa5.31□□□□□ -1.56
VPS39-202ENST00000348544 TRBV7-3A0A075B6L6 115 aa5.3□□□□□ -1.56
VPS39-202ENST00000348544 A0A1B0GWB2 263 aa5.3□□□□□ -1.56
VPS39-202ENST00000348544 TNFRSF6BO95407 300 aa5.3□□□□□ -1.56
VPS39-202ENST00000348544 GATA3P23771 443 aa5.3□□□□□ -1.56
VPS39-202ENST00000348544 DLX1P56177 255 aa5.3□□□□□ -1.56
VPS39-202ENST00000348544 CCL8P80075 99 aa5.3□□□□□ -1.56
VPS39-202ENST00000348544 PSMG4Q5JS54 123 aa5.3□□□□□ -1.56
VPS39-202ENST00000348544 MORN3Q6PF18 240 aaPredicted RBP5.3□□□□□ -1.56
VPS39-202ENST00000348544 C8orf86Q6ZUL3 223 aa5.3□□□□□ -1.56
VPS39-202ENST00000348544 C22orf34Q6ZV56 151 aa5.3□□□□□ -1.56
VPS39-202ENST00000348544 SEM1Q6ZVN7 128 aa5.3□□□□□ -1.56
VPS39-202ENST00000348544 ZNF491Q8N8L2 437 aa5.3□□□□□ -1.56
VPS39-202ENST00000348544 Q8TAT8 98 aa5.3□□□□□ -1.56
VPS39-202ENST00000348544 TMEM160Q9NX00 188 aa5.3□□□□□ -1.56
VPS39-202ENST00000348544 MRPL16Q9NX20 251 aaKnown RBP5.3□□□□□ -1.56
VPS39-202ENST00000348544 SIGLEC9Q9Y336 463 aa5.3□□□□□ -1.56
VPS39-202ENST00000348544 IGLV2-18A0A075B6J9 118 aa5.3□□□□□ -1.56
VPS39-202ENST00000348544 MT-ATP8P03928 68 aa5.3□□□□□ -1.56
VPS39-202ENST00000348544 DLX6P56179 175 aa5.3□□□□□ -1.56
VPS39-202ENST00000348544 PRB3Q04118 309 aaPredicted RBP5.3□□□□□ -1.56
VPS39-202ENST00000348544 FOXI1Q12951 378 aa5.3□□□□□ -1.56
VPS39-202ENST00000348544 TAL2Q16559 108 aa5.3□□□□□ -1.56
VPS39-202ENST00000348544 LPAL2Q16609 132 aa5.3□□□□□ -1.56
VPS39-202ENST00000348544 LYPD2Q6UXB3 125 aa5.3□□□□□ -1.56
VPS39-202ENST00000348544 NFE4Q86UQ8 179 aa5.3□□□□□ -1.56
VPS39-202ENST00000348544 TTC9CQ8N5M4 171 aa5.3□□□□□ -1.56
VPS39-202ENST00000348544 SYT8Q8NBV8 401 aa5.3□□□□□ -1.56
VPS39-202ENST00000348544 K7EIM0 57 aa5.3□□□□□ -1.56
VPS39-202ENST00000348544 CEACAM4O75871 244 aa5.3□□□□□ -1.56
VPS39-202ENST00000348544 APOMO95445 188 aa5.3□□□□□ -1.56
VPS39-202ENST00000348544 MC5RP33032 325 aa5.3□□□□□ -1.56
VPS39-202ENST00000348544 ZNF474Q6S9Z5 364 aaPredicted RBP5.3□□□□□ -1.56
VPS39-202ENST00000348544 COX8CQ7Z4L0 72 aa5.3□□□□□ -1.56
VPS39-202ENST00000348544 C8orf31Q8N9H6 132 aa5.3□□□□□ -1.56
VPS39-202ENST00000348544 ZNF418Q8TF45 676 aaPredicted RBP5.3□□□□□ -1.56
VPS39-202ENST00000348544 PRR25Q96S07 402 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms