RNA–Protein interactions for RNA: ENST00000337354.8

SEC13-201, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SEC13, Length 1,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-201ENST00000337354 HLA-DMBP28068 263 aa11.33□□□□□ -0.6
SEC13-201ENST00000337354 FHITP49789 147 aa11.33□□□□□ -0.6
SEC13-201ENST00000337354 SULT1A2P50226 295 aa11.33□□□□□ -0.6
SEC13-201ENST00000337354 HAGHQ16775 308 aa11.33□□□□□ -0.6
SEC13-201ENST00000337354 FAM74A1Q5RGS3 127 aa11.33□□□□□ -0.6
SEC13-201ENST00000337354 MORN3Q6PF18 240 aaPredicted RBP11.33□□□□□ -0.6
SEC13-201ENST00000337354 SSX7Q7RTT5 188 aa11.33□□□□□ -0.6
SEC13-201ENST00000337354 FAM213BQ8TBF2 198 aa11.33□□□□□ -0.6
SEC13-201ENST00000337354 CSTL1Q9H114 145 aa11.33□□□□□ -0.6
SEC13-201ENST00000337354 MAP1LC3B2A6NCE7 125 aa11.32□□□□□ -0.6
SEC13-201ENST00000337354 H2AFB1P0C5Y9 115 aa11.32□□□□□ -0.6
SEC13-201ENST00000337354 RPL35AP18077 110 aaKnown RBP11.32□□□□□ -0.6
SEC13-201ENST00000337354 ICAM4Q14773 271 aa11.32□□□□□ -0.6
SEC13-201ENST00000337354 SBSPONQ8IVN8 264 aa11.32□□□□□ -0.6
SEC13-201ENST00000337354 EXOC3-AS1Q8N2X6 119 aa11.32□□□□□ -0.6
SEC13-201ENST00000337354 ARL6IP6Q8N6S5 226 aa11.32□□□□□ -0.6
SEC13-201ENST00000337354 OR8A1Q8NGG7 326 aa11.32□□□□□ -0.6
SEC13-201ENST00000337354 RXFP4Q8TDU9 374 aa11.32□□□□□ -0.6
SEC13-201ENST00000337354 SFT2D1Q8WV19 159 aa11.32□□□□□ -0.6
SEC13-201ENST00000337354 MAP1LC3BQ9GZQ8 125 aa11.32□□□□□ -0.6
SEC13-201ENST00000337354 Q9H3A6 140 aa11.32□□□□□ -0.6
SEC13-201ENST00000337354 BOLA1Q9Y3E2 137 aa11.32□□□□□ -0.6
SEC13-201ENST00000337354 CSN1S1P47710 185 aa11.31□□□□□ -0.6
SEC13-201ENST00000337354 GDF5OSQ5U4N7 250 aa11.31□□□□□ -0.6
SEC13-201ENST00000337354 OTORQ9NRC9 128 aa11.31□□□□□ -0.6
SEC13-201ENST00000337354 A0A1W2PRE2 83 aa11.3□□□□□ -0.6
SEC13-201ENST00000337354 PGPA6NDG6 321 aa11.3□□□□□ -0.6
SEC13-201ENST00000337354 ZNF705FA8MVS1 300 aaPredicted RBP11.3□□□□□ -0.6
SEC13-201ENST00000337354 F6UB75 175 aa11.3□□□□□ -0.6
SEC13-201ENST00000337354 TEX46H3BTG2 121 aa11.3□□□□□ -0.6
SEC13-201ENST00000337354 Q6ZWC4 215 aa11.3□□□□□ -0.6
SEC13-201ENST00000337354 IQCF2Q8IXL9 164 aa11.3□□□□□ -0.6
SEC13-201ENST00000337354 OR4B1Q8NGF8 309 aa11.3□□□□□ -0.6
SEC13-201ENST00000337354 OR10J6PQ8NGY7 276 aa11.3□□□□□ -0.6
SEC13-201ENST00000337354 NKX6-2Q9C056 277 aaPredicted RBP11.3□□□□□ -0.6
SEC13-201ENST00000337354 TRAV1-1A0A0B4J248 108 aa11.29□□□□□ -0.6
SEC13-201ENST00000337354 A8MTW9 85 aa11.29□□□□□ -0.6
SEC13-201ENST00000337354 BOLA2-SMG1P6H3BVE0 249 aa11.29□□□□□ -0.6
SEC13-201ENST00000337354 M0R3E3 92 aa11.29□□□□□ -0.6
SEC13-201ENST00000337354 CNN1P51911 297 aaKnown RBP11.29□□□□□ -0.6
SEC13-201ENST00000337354 DEFB1P60022 68 aa11.29□□□□□ -0.6
SEC13-201ENST00000337354 CMTM2Q8TAZ6 248 aa11.29□□□□□ -0.6
SEC13-201ENST00000337354 C1QTNF4Q9BXJ3 329 aa11.29□□□□□ -0.6
SEC13-201ENST00000337354 HBE1P02100 147 aa11.28□□□□□ -0.6
SEC13-201ENST00000337354 PPT1P50897 306 aa11.28□□□□□ -0.6
SEC13-201ENST00000337354 FGF8P55075 233 aaPredicted RBP11.28□□□□□ -0.6
SEC13-201ENST00000337354 HIST1H1AQ02539 215 aaPredicted RBP11.28□□□□□ -0.6
SEC13-201ENST00000337354 ASCL2Q99929 193 aa11.28□□□□□ -0.6
SEC13-201ENST00000337354 TM2D3Q9BRN9 247 aa11.28□□□□□ -0.6
SEC13-201ENST00000337354 ZMAT4Q9H898 229 aa11.28□□□□□ -0.6
SEC13-201ENST00000337354 RBAKDNA6NC62 111 aa11.28□□□□□ -0.6
SEC13-201ENST00000337354 PRAC2D3DTV9 90 aa11.28□□□□□ -0.6
SEC13-201ENST00000337354 IGKV3-20P01619 116 aa11.28□□□□□ -0.6
SEC13-201ENST00000337354 ALKAL2Q6UX46 152 aa11.28□□□□□ -0.6
SEC13-201ENST00000337354 LINC00477Q96M19 166 aa11.28□□□□□ -0.6
SEC13-201ENST00000337354 SPATA25Q9BR10 227 aa11.28□□□□□ -0.6
SEC13-201ENST00000337354 TMPRSS5Q9H3S3 457 aa11.28□□□□□ -0.6
SEC13-201ENST00000337354 TP53TG1Q9Y2A0 90 aa11.28□□□□□ -0.6
SEC13-201ENST00000337354 ARL2-SNX15V9GYD0 113 aa11.28□□□□□ -0.6
SEC13-201ENST00000337354 ZNF705EA8MWA4 302 aaPredicted RBP11.27□□□□□ -0.61
SEC13-201ENST00000337354 NPIPB6E9PJ23 425 aa11.27□□□□□ -0.61
SEC13-201ENST00000337354 CA1P00915 261 aaPredicted RBP11.27□□□□□ -0.61
SEC13-201ENST00000337354 AMBPP02760 352 aa11.27□□□□□ -0.61
SEC13-201ENST00000337354 SLC25A5P05141 298 aaKnown RBP11.27□□□□□ -0.61
SEC13-201ENST00000337354 ZNF705DP0CH99 300 aaPredicted RBP11.27□□□□□ -0.61
SEC13-201ENST00000337354 ZNF705BP0CI00 300 aaPredicted RBP11.27□□□□□ -0.61
SEC13-201ENST00000337354 SUMO1P63165 101 aaKnown RBP11.27□□□□□ -0.61
SEC13-201ENST00000337354 PPP1R14DQ9NXH3 145 aa11.27□□□□□ -0.61
SEC13-201ENST00000337354 SERTM2A0A1B0GWG4 89 aa11.26□□□□□ -0.61
SEC13-201ENST00000337354 DIRC3C9JPN6 131 aa11.26□□□□□ -0.61
SEC13-201ENST00000337354 BLOC1S1P78537 153 aa11.26□□□□□ -0.61
SEC13-201ENST00000337354 AMTNQ6UX39 209 aa11.26□□□□□ -0.61
SEC13-201ENST00000337354 C9orf47Q6ZRZ4 202 aa11.26□□□□□ -0.61
SEC13-201ENST00000337354 C5orf17Q8NAS9 161 aa11.26□□□□□ -0.61
SEC13-201ENST00000337354 ODF3Q96PU9 254 aa11.26□□□□□ -0.61
SEC13-201ENST00000337354 FAM74A7A6NL05 159 aa11.25□□□□□ -0.61
SEC13-201ENST00000337354 GIG44P09565 113 aaPredicted RBP11.25□□□□□ -0.61
SEC13-201ENST00000337354 PMS2P11Q13670 270 aa11.25□□□□□ -0.61
SEC13-201ENST00000337354 TEX261Q6UWH6 196 aa11.25□□□□□ -0.61
SEC13-201ENST00000337354 RNF183Q96D59 192 aa11.25□□□□□ -0.61
SEC13-201ENST00000337354 RCHY1Q96PM5 261 aa11.25□□□□□ -0.61
SEC13-201ENST00000337354 TCEAL7Q9BRU2 100 aa11.25□□□□□ -0.61
SEC13-201ENST00000337354 EPDR1Q9UM22 224 aa11.25□□□□□ -0.61
SEC13-201ENST00000337354 GGTLC3B5MD39 225 aa11.24□□□□□ -0.61
SEC13-201ENST00000337354 SPRY2O43597 315 aa11.24□□□□□ -0.61
SEC13-201ENST00000337354 TSPOP30536 169 aa11.24□□□□□ -0.61
SEC13-201ENST00000337354 TMEM78Q5T7P6 136 aa11.24□□□□□ -0.61
SEC13-201ENST00000337354 AGPAT4-IT1Q9H0P7 198 aa11.24□□□□□ -0.61
SEC13-201ENST00000337354 SLC35B3Q9H1N7 401 aa11.24□□□□□ -0.61
SEC13-201ENST00000337354 YTHDF2Q9Y5A9 579 aaKnown RBP11.24□□□□□ -0.61
SEC13-201ENST00000337354 TRBV7-9A0A0J9YWB2 115 aa11.23□□□□□ -0.61
SEC13-201ENST00000337354 A0A1B0GV50 99 aa11.23□□□□□ -0.61
SEC13-201ENST00000337354 K7EQM0 130 aa11.23□□□□□ -0.61
SEC13-201ENST00000337354 TCRAP04437 139 aa11.23□□□□□ -0.61
SEC13-201ENST00000337354 CDKN1BP46527 198 aa11.23□□□□□ -0.61
SEC13-201ENST00000337354 UBE2G2P60604 165 aa11.23□□□□□ -0.61
SEC13-201ENST00000337354 CSNK1G2-AS1Q8NCQ2 148 aa11.23□□□□□ -0.61
SEC13-201ENST00000337354 HIST1H2BAQ96A08 127 aa11.23□□□□□ -0.61
SEC13-201ENST00000337354 XCL2Q9UBD3 114 aa11.23□□□□□ -0.61
SEC13-201ENST00000337354 IGKV2-40A0A087WW87 121 aaPredicted RBP11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms