RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 NDUFA4O00483 81 aa11.47□□□□□ -0.57
CCDC47-201ENST00000225726 BUB3O43684 328 aa11.47□□□□□ -0.57
CCDC47-201ENST00000225726 IGHV3-11P01762 117 aa11.47□□□□□ -0.57
CCDC47-201ENST00000225726 PSG9Q00887 426 aa11.47□□□□□ -0.57
CCDC47-201ENST00000225726 C1orf194Q5T5A4 169 aa11.47□□□□□ -0.57
CCDC47-201ENST00000225726 KCNIP4Q6PIL6 250 aa11.47□□□□□ -0.57
CCDC47-201ENST00000225726 BAGE2Q86Y30 109 aa11.47□□□□□ -0.57
CCDC47-201ENST00000225726 FAM210BQ96KR6 192 aa11.47□□□□□ -0.57
CCDC47-201ENST00000225726 TRBV12-3P01733 135 aa11.46□□□□□ -0.57
CCDC47-201ENST00000225726 SMIM12Q96EX1 92 aa11.46□□□□□ -0.57
CCDC47-201ENST00000225726 CLUHP3Q96NS8 147 aa11.46□□□□□ -0.57
CCDC47-201ENST00000225726 SMAD5-AS1Q9Y6J3 95 aa11.46□□□□□ -0.57
CCDC47-201ENST00000225726 U3KQE9 123 aa11.46□□□□□ -0.57
CCDC47-201ENST00000225726 ITPR3Q14573 2671 aa11.46□□□□□ -0.57
CCDC47-201ENST00000225726 ZNF253O75346 499 aa11.46□□□□□ -0.58
CCDC47-201ENST00000225726 GZMBP10144 247 aa11.46□□□□□ -0.58
CCDC47-201ENST00000225726 LCNL1Q6ZST4 164 aa11.46□□□□□ -0.58
CCDC47-201ENST00000225726 PYGO2Q9BRQ0 406 aa11.46□□□□□ -0.58
CCDC47-201ENST00000225726 PAM16Q9Y3D7 125 aa11.46□□□□□ -0.58
CCDC47-201ENST00000225726 C1QL4Q86Z23 238 aa11.45□□□□□ -0.58
CCDC47-201ENST00000225726 Q8N2B8 174 aa11.45□□□□□ -0.58
CCDC47-201ENST00000225726 AAMDCQ9H7C9 122 aa11.45□□□□□ -0.58
CCDC47-201ENST00000225726 A0A087X0K7 114 aa11.45□□□□□ -0.58
CCDC47-201ENST00000225726 MGST1P10620 155 aaKnown RBP11.45□□□□□ -0.58
CCDC47-201ENST00000225726 ERVFC1-1P60608 527 aa11.45□□□□□ -0.58
CCDC47-201ENST00000225726 SLC35B1P78383 322 aa11.45□□□□□ -0.58
CCDC47-201ENST00000225726 YAE1D1Q9NRH1 226 aa11.45□□□□□ -0.58
CCDC47-201ENST00000225726 OSTCQ9NRP0 149 aa11.45□□□□□ -0.58
CCDC47-201ENST00000225726 GGCTO75223 188 aaKnown RBP11.44□□□□□ -0.58
CCDC47-201ENST00000225726 TRBV6-1A0A0K0K1D8 114 aa11.44□□□□□ -0.58
CCDC47-201ENST00000225726 FOXE3Q13461 319 aa11.44□□□□□ -0.58
CCDC47-201ENST00000225726 LTAP01374 205 aa11.44□□□□□ -0.58
CCDC47-201ENST00000225726 GOLT1AQ6ZVE7 132 aa11.44□□□□□ -0.58
CCDC47-201ENST00000225726 A0A1B0GUS0 222 aa11.43□□□□□ -0.58
CCDC47-201ENST00000225726 ZNF207O43670 478 aaKnown RBP11.43□□□□□ -0.58
CCDC47-201ENST00000225726 ELANEP08246 267 aa11.43□□□□□ -0.58
CCDC47-201ENST00000225726 FOXL1Q12952 345 aa11.43□□□□□ -0.58
CCDC47-201ENST00000225726 NHLRC2Q8NBF2 726 aa11.43□□□□□ -0.58
CCDC47-201ENST00000225726 PEF1Q9UBV8 284 aaKnown RBP11.43□□□□□ -0.58
CCDC47-201ENST00000225726 V9GYV3 84 aa11.43□□□□□ -0.58
CCDC47-201ENST00000225726 K7EQM0 130 aa11.43□□□□□ -0.58
CCDC47-201ENST00000225726 TMEM75Q8N9X5 138 aa11.43□□□□□ -0.58
CCDC47-201ENST00000225726 IL36BQ9NZH7 164 aa11.43□□□□□ -0.58
CCDC47-201ENST00000225726 C20orf202A1L168 122 aa11.43□□□□□ -0.58
CCDC47-201ENST00000225726 APOHP02749 345 aaPredicted RBP11.43□□□□□ -0.58
CCDC47-201ENST00000225726 RIPPLY3P57055 190 aa11.43□□□□□ -0.58
CCDC47-201ENST00000225726 C10orf99Q6UWK7 81 aa11.43□□□□□ -0.58
CCDC47-201ENST00000225726 Q86TA4 180 aa11.43□□□□□ -0.58
CCDC47-201ENST00000225726 BTF3L4Q96K17 158 aa11.43□□□□□ -0.58
CCDC47-201ENST00000225726 DUX5Q96PT3 197 aa11.43□□□□□ -0.58
CCDC47-201ENST00000225726 GCN1Q92616 2671 aaKnown RBP11.43□□□□□ -0.58
CCDC47-201ENST00000225726 TEX15Q9BXT5 2789 aa11.42□□□□□ -0.58
CCDC47-201ENST00000225726 A0A1W2PPQ1 181 aa11.42□□□□□ -0.58
CCDC47-201ENST00000225726 ZNF785A8K8V0 405 aa11.42□□□□□ -0.58
CCDC47-201ENST00000225726 DIRC3C9JPN6 131 aa11.42□□□□□ -0.58
CCDC47-201ENST00000225726 FAM231DQ6ZW35 169 aa11.42□□□□□ -0.58
CCDC47-201ENST00000225726 RNASE7Q9H1E1 156 aaKnown RBP11.42□□□□□ -0.58
CCDC47-201ENST00000225726 SERTM2A0A1B0GWG4 89 aa11.42□□□□□ -0.58
CCDC47-201ENST00000225726 CSN1S1P47710 185 aa11.42□□□□□ -0.58
CCDC47-201ENST00000225726 IBA57Q5T440 356 aaKnown RBP11.42□□□□□ -0.58
CCDC47-201ENST00000225726 SGK494Q96LW2 274 aa11.42□□□□□ -0.58
CCDC47-201ENST00000225726 MLST8Q9BVC4 326 aa11.42□□□□□ -0.58
CCDC47-201ENST00000225726 UNC79Q9P2D8 2635 aa11.42□□□□□ -0.58
CCDC47-201ENST00000225726 IGHV3-66A0A0C4DH42 116 aa11.41□□□□□ -0.58
CCDC47-201ENST00000225726 IGLV2-11P01706 119 aa11.41□□□□□ -0.58
CCDC47-201ENST00000225726 UNQ9165/PRO28630Q6UXU0 137 aa11.41□□□□□ -0.58
CCDC47-201ENST00000225726 MYOZ3Q8TDC0 251 aa11.41□□□□□ -0.58
CCDC47-201ENST00000225726 FAM3BP58499 235 aaPredicted RBP11.41□□□□□ -0.58
CCDC47-201ENST00000225726 RPEL1Q2QD12 228 aa11.41□□□□□ -0.58
CCDC47-201ENST00000225726 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.41□□□□□ -0.58
CCDC47-201ENST00000225726 SRD5A3Q9H8P0 318 aa11.41□□□□□ -0.58
CCDC47-201ENST00000225726 ZNF331Q9NQX6 463 aaPredicted RBP11.41□□□□□ -0.58
CCDC47-201ENST00000225726 TRAV9-1A0A075B6T8 112 aa11.41□□□□□ -0.58
CCDC47-201ENST00000225726 RNF152Q8N8N0 203 aa11.41□□□□□ -0.58
CCDC47-201ENST00000225726 DNAJC9-AS1A6NH13 148 aa11.4□□□□□ -0.58
CCDC47-201ENST00000225726 SLC50A1Q9BRV3 221 aa11.4□□□□□ -0.58
CCDC47-201ENST00000225726 IGHV3OR16-13A0A075B7E8 117 aa11.4□□□□□ -0.58
CCDC47-201ENST00000225726 IGHV3-49A0A0A0MS15 119 aa11.4□□□□□ -0.58
CCDC47-201ENST00000225726 IGHV3-74A0A0B4J1X5 117 aa11.4□□□□□ -0.58
CCDC47-201ENST00000225726 XKRY2A2RUG3 117 aa11.4□□□□□ -0.58
CCDC47-201ENST00000225726 M0R3E3 92 aa11.4□□□□□ -0.58
CCDC47-201ENST00000225726 AMBPP02760 352 aa11.4□□□□□ -0.58
CCDC47-201ENST00000225726 TYMSP04818 313 aa11.4□□□□□ -0.58
CCDC47-201ENST00000225726 RBX1P62877 108 aa11.4□□□□□ -0.58
CCDC47-201ENST00000225726 PSG3Q16557 428 aa11.4□□□□□ -0.58
CCDC47-201ENST00000225726 TDRG1Q3Y452 100 aa11.4□□□□□ -0.58
CCDC47-201ENST00000225726 GLMPQ8WWB7 406 aa11.4□□□□□ -0.58
CCDC47-201ENST00000225726 TMEM183AQ8IXX5 376 aa11.4□□□□□ -0.59
CCDC47-201ENST00000225726 SERTAD4Q9NUC0 356 aa11.4□□□□□ -0.59
CCDC47-201ENST00000225726 TMEM160Q9NX00 188 aa11.4□□□□□ -0.59
CCDC47-201ENST00000225726 TRAV8-1A0A0A6YYK1 113 aa11.39□□□□□ -0.59
CCDC47-201ENST00000225726 SCGB2A2Q13296 93 aa11.39□□□□□ -0.59
CCDC47-201ENST00000225726 PRNTQ86SH4 94 aa11.39□□□□□ -0.59
CCDC47-201ENST00000225726 GRAMD2BQ96HH9 432 aa11.39□□□□□ -0.59
CCDC47-201ENST00000225726 ZNF492Q9P255 531 aa11.39□□□□□ -0.59
CCDC47-201ENST00000225726 LBHQ53QV2 105 aaPredicted RBP11.39□□□□□ -0.59
CCDC47-201ENST00000225726 PSG8Q9UQ74 426 aa11.39□□□□□ -0.59
CCDC47-201ENST00000225726 ZFP30Q9Y2G7 519 aa11.39□□□□□ -0.59
CCDC47-201ENST00000225726 ZNF469Q96JG9 3925 aaPredicted RBP11.39□□□□□ -0.59
CCDC47-201ENST00000225726 FAM106AQ4KMX7 169 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 84.7 ms