RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 LINC00612Q8N6U2 182 aa10.08□□□□□ -0.8
PNKP-218ENST00000625299 RPUSD4Q96CM3 377 aaKnown RBP10.08□□□□□ -0.8
PNKP-218ENST00000625299 HIGD1AQ9Y241 93 aa10.08□□□□□ -0.8
PNKP-218ENST00000625299 A0A096LPF7 62 aa10.07□□□□□ -0.8
PNKP-218ENST00000625299 SMCO3A2RU48 225 aa10.07□□□□□ -0.8
PNKP-218ENST00000625299 J3KRW8 73 aa10.07□□□□□ -0.8
PNKP-218ENST00000625299 SIVA1O15304 175 aa10.07□□□□□ -0.8
PNKP-218ENST00000625299 RGS5O15539 181 aa10.07□□□□□ -0.8
PNKP-218ENST00000625299 OR5G3P0C626 314 aa10.07□□□□□ -0.8
PNKP-218ENST00000625299 DNAH10OSP0CZ25 163 aa10.07□□□□□ -0.8
PNKP-218ENST00000625299 SRPXP78539 464 aa10.07□□□□□ -0.8
PNKP-218ENST00000625299 ICAM4Q14773 271 aa10.07□□□□□ -0.8
PNKP-218ENST00000625299 SHANK2-AS3Q9BTD1 123 aa10.07□□□□□ -0.8
PNKP-218ENST00000625299 TNFRSF18Q9Y5U5 241 aa10.07□□□□□ -0.8
PNKP-218ENST00000625299 H3BNG1 76 aa10.06□□□□□ -0.8
PNKP-218ENST00000625299 J3QL48 77 aa10.06□□□□□ -0.8
PNKP-218ENST00000625299 WRBO00258 174 aa10.06□□□□□ -0.8
PNKP-218ENST00000625299 IL5P05113 134 aa10.06□□□□□ -0.8
PNKP-218ENST00000625299 RPP30P78346 268 aaKnown RBP10.06□□□□□ -0.8
PNKP-218ENST00000625299 HAMPP81172 84 aa10.06□□□□□ -0.8
PNKP-218ENST00000625299 MRPS10P82664 201 aaKnown RBP10.06□□□□□ -0.8
PNKP-218ENST00000625299 GFI1BQ5VTD9 330 aa10.06□□□□□ -0.8
PNKP-218ENST00000625299 ACOT7LQ6ZUV0 252 aa10.06□□□□□ -0.8
PNKP-218ENST00000625299 CCDC190Q86UF4 302 aa10.06□□□□□ -0.8
PNKP-218ENST00000625299 SMIM4Q8WVI0 70 aa10.06□□□□□ -0.8
PNKP-218ENST00000625299 SCGB3A2Q96PL1 93 aa10.06□□□□□ -0.8
PNKP-218ENST00000625299 MIXL1Q9H2W2 232 aa10.06□□□□□ -0.8
PNKP-218ENST00000625299 MCUBQ9NWR8 336 aa10.06□□□□□ -0.8
PNKP-218ENST00000625299 SCP2D1Q9UJQ7 156 aa10.06□□□□□ -0.8
PNKP-218ENST00000625299 SRRM2Q9UQ35 2752 aaKnown RBP10.05□□□□□ -0.8
PNKP-218ENST00000625299 PRSS46E5RG02 174 aa10.05□□□□□ -0.8
PNKP-218ENST00000625299 H3BP45 60 aa10.05□□□□□ -0.8
PNKP-218ENST00000625299 PITX3O75364 302 aa10.05□□□□□ -0.8
PNKP-218ENST00000625299 HYPMO75409 117 aa10.05□□□□□ -0.8
PNKP-218ENST00000625299 MED6O75586 246 aa10.05□□□□□ -0.8
PNKP-218ENST00000625299 SNRPCP09234 159 aaKnown RBP10.05□□□□□ -0.8
PNKP-218ENST00000625299 SPANXN5Q5MJ07 72 aa10.05□□□□□ -0.8
PNKP-218ENST00000625299 CYP2G1PQ6ZSU1 146 aa10.05□□□□□ -0.8
PNKP-218ENST00000625299 Q6ZTI0 123 aa10.05□□□□□ -0.8
PNKP-218ENST00000625299 CIB3Q96Q77 187 aaPredicted RBP10.05□□□□□ -0.8
PNKP-218ENST00000625299 C20orf144Q9BQM9 153 aa10.05□□□□□ -0.8
PNKP-218ENST00000625299 NAA50Q9GZZ1 169 aaKnown RBP10.05□□□□□ -0.8
PNKP-218ENST00000625299 TRGV2A0A075B6R0 118 aa10.04□□□□□ -0.8
PNKP-218ENST00000625299 A0A087X0K7 114 aa10.04□□□□□ -0.8
PNKP-218ENST00000625299 FAM229AH3BQW9 127 aa10.04□□□□□ -0.8
PNKP-218ENST00000625299 NXPH4O95158 308 aa10.04□□□□□ -0.8
PNKP-218ENST00000625299 LINC00869P0C866 280 aa10.04□□□□□ -0.8
PNKP-218ENST00000625299 ANXA7P20073 488 aaKnown RBP10.04□□□□□ -0.8
PNKP-218ENST00000625299 IL18Q14116 193 aa10.04□□□□□ -0.8
PNKP-218ENST00000625299 TMED4Q7Z7H5 227 aa10.04□□□□□ -0.8
PNKP-218ENST00000625299 VSIG2Q96IQ7 327 aa10.04□□□□□ -0.8
PNKP-218ENST00000625299 A0A087WTM6 91 aa10.03□□□□□ -0.8
PNKP-218ENST00000625299 SYNGR2O43760 224 aa10.03□□□□□ -0.8
PNKP-218ENST00000625299 Q6ZSN1 163 aa10.03□□□□□ -0.8
PNKP-218ENST00000625299 TRAV12-3A0A0B4J271 114 aa10.02□□□□□ -0.81
PNKP-218ENST00000625299 DUXBA0A1W2PPF3 345 aa10.02□□□□□ -0.81
PNKP-218ENST00000625299 PMS2P5A8MQ11 134 aa10.02□□□□□ -0.81
PNKP-218ENST00000625299 CTDSP2O14595 271 aa10.02□□□□□ -0.81
PNKP-218ENST00000625299 CTF1Q16619 201 aa10.02□□□□□ -0.81
PNKP-218ENST00000625299 ARL6Q9H0F7 186 aa10.02□□□□□ -0.81
PNKP-218ENST00000625299 STRAPQ9Y3F4 350 aaKnown RBP10.02□□□□□ -0.81
PNKP-218ENST00000625299 PIGBOS1A0A0B4J2F0 54 aa10.01□□□□□ -0.81
PNKP-218ENST00000625299 ANKRD20A5PA0PJZ0 165 aa10.01□□□□□ -0.81
PNKP-218ENST00000625299 PRAC2D3DTV9 90 aa10.01□□□□□ -0.81
PNKP-218ENST00000625299 H3BTX0 84 aa10.01□□□□□ -0.81
PNKP-218ENST00000625299 GCSHP23434 173 aa10.01□□□□□ -0.81
PNKP-218ENST00000625299 VAMP1P23763 118 aa10.01□□□□□ -0.81
PNKP-218ENST00000625299 LCN15Q6UWW0 184 aa10.01□□□□□ -0.81
PNKP-218ENST00000625299 NFE4Q86UQ8 179 aa10.01□□□□□ -0.81
PNKP-218ENST00000625299 ICOSQ9Y6W8 199 aa10.01□□□□□ -0.81
PNKP-218ENST00000625299 TRGV1A0A0A0MS02 117 aa10□□□□□ -0.81
PNKP-218ENST00000625299 S100A7AQ86SG5 101 aa10□□□□□ -0.81
PNKP-218ENST00000625299 DIRAS2Q96HU8 199 aa10□□□□□ -0.81
PNKP-218ENST00000625299 SLC50A1Q9BRV3 221 aa10□□□□□ -0.81
PNKP-218ENST00000625299 ARV1Q9H2C2 271 aa10□□□□□ -0.81
PNKP-218ENST00000625299 ZNF331Q9NQX6 463 aaPredicted RBP10□□□□□ -0.81
PNKP-218ENST00000625299 CTDSPLO15194 276 aa9.99□□□□□ -0.81
PNKP-218ENST00000625299 MRPS12O15235 138 aaKnown RBP9.99□□□□□ -0.81
PNKP-218ENST00000625299 PAX4O43316 350 aa9.99□□□□□ -0.81
PNKP-218ENST00000625299 HOXB5P09067 269 aa9.99□□□□□ -0.81
PNKP-218ENST00000625299 SLC25A6P12236 298 aa9.99□□□□□ -0.81
PNKP-218ENST00000625299 CXCL2P19875 107 aa9.99□□□□□ -0.81
PNKP-218ENST00000625299 LEPP41159 167 aa9.99□□□□□ -0.81
PNKP-218ENST00000625299 RRAS2P62070 204 aaPredicted RBP9.99□□□□□ -0.81
PNKP-218ENST00000625299 DAZ2Q13117 558 aaKnown RBP9.99□□□□□ -0.81
PNKP-218ENST00000625299 PYGO2Q9BRQ0 406 aa9.99□□□□□ -0.81
PNKP-218ENST00000625299 GSN-AS1Q9NRJ2 163 aa9.99□□□□□ -0.81
PNKP-218ENST00000625299 RABL2BQ9UNT1 228 aa9.99□□□□□ -0.81
PNKP-218ENST00000625299 FUT9Q9Y231 359 aa9.99□□□□□ -0.81
PNKP-218ENST00000625299 LINC00854A0A1B0GVQ3 168 aa9.98□□□□□ -0.81
PNKP-218ENST00000625299 SLC17A3O00476 420 aa9.98□□□□□ -0.81
PNKP-218ENST00000625299 IGHV3-53P01767 116 aa9.98□□□□□ -0.81
PNKP-218ENST00000625299 PLP1P60201 277 aa9.98□□□□□ -0.81
PNKP-218ENST00000625299 SELENOTP62341 195 aa9.98□□□□□ -0.81
PNKP-218ENST00000625299 PATE2Q6UY27 113 aa9.98□□□□□ -0.81
PNKP-218ENST00000625299 TRAV9-2A0A087WT02 112 aa9.97□□□□□ -0.81
PNKP-218ENST00000625299 CT45A10P0DMU9 189 aa9.97□□□□□ -0.81
PNKP-218ENST00000625299 SLC38A11Q08AI6 406 aa9.97□□□□□ -0.81
PNKP-218ENST00000625299 TMEM128Q5BJH2 165 aa9.97□□□□□ -0.81
PNKP-218ENST00000625299 LINC00305Q7Z4B0 112 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms