RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 OR4B1Q8NGF8 309 aa4.96□□□□□ -1.62
VPS53-213ENST00000572334 OR1L6Q8NGR2 347 aa4.96□□□□□ -1.62
VPS53-213ENST00000572334 OR5H2Q8NGV7 314 aa4.96□□□□□ -1.62
VPS53-213ENST00000572334 OR51H1Q8NH63 302 aa4.96□□□□□ -1.62
VPS53-213ENST00000572334 VN1R17PQ8TDU5 208 aa4.96□□□□□ -1.62
VPS53-213ENST00000572334 Q8WTZ3 238 aa4.96□□□□□ -1.62
VPS53-213ENST00000572334 MOB3AQ96BX8 217 aa4.96□□□□□ -1.62
VPS53-213ENST00000572334 QTRT1Q9BXR0 403 aaKnown RBP4.96□□□□□ -1.62
VPS53-213ENST00000572334 SNHG12Q9BXW3 62 aa4.96□□□□□ -1.62
VPS53-213ENST00000572334 NAGKQ9UJ70 344 aa4.96□□□□□ -1.62
VPS53-213ENST00000572334 TP53TG1Q9Y2A0 90 aa4.96□□□□□ -1.62
VPS53-213ENST00000572334 F11RQ9Y624 299 aaKnown RBP4.96□□□□□ -1.62
VPS53-213ENST00000572334 FAT2Q9NYQ8 4349 aa4.96□□□□□ -1.62
VPS53-213ENST00000572334 DNAH2Q9P225 4427 aa4.95□□□□□ -1.62
VPS53-213ENST00000572334 TRAV1-1A0A0B4J248 108 aa4.95□□□□□ -1.62
VPS53-213ENST00000572334 MAP1LC3B2A6NCE7 125 aa4.95□□□□□ -1.62
VPS53-213ENST00000572334 CCSO14618 274 aa4.95□□□□□ -1.62
VPS53-213ENST00000572334 SPRY2O43597 315 aa4.95□□□□□ -1.62
VPS53-213ENST00000572334 ZNF207O43670 478 aaKnown RBP4.95□□□□□ -1.62
VPS53-213ENST00000572334 PGLYRP1O75594 196 aaPredicted RBP4.95□□□□□ -1.62
VPS53-213ENST00000572334 IGKV1-39P01597 117 aa4.95□□□□□ -1.62
VPS53-213ENST00000572334 IGKV1D-39P04432 117 aa4.95□□□□□ -1.62
VPS53-213ENST00000572334 CTSGP08311 255 aa4.95□□□□□ -1.62
VPS53-213ENST00000572334 OR13C7P0DN81 318 aa4.95□□□□□ -1.62
VPS53-213ENST00000572334 F2RP25116 425 aa4.95□□□□□ -1.62
VPS53-213ENST00000572334 FCGR2BP31994 310 aaPredicted RBP4.95□□□□□ -1.62
VPS53-213ENST00000572334 AKR1C3P42330 323 aa4.95□□□□□ -1.62
VPS53-213ENST00000572334 CATR1Q13166 79 aa4.95□□□□□ -1.62
VPS53-213ENST00000572334 OR5I1Q13606 314 aa4.95□□□□□ -1.62
VPS53-213ENST00000572334 PMS2P11Q13670 270 aa4.95□□□□□ -1.62
VPS53-213ENST00000572334 IAH1Q2TAA2 248 aaPredicted RBP4.95□□□□□ -1.62
VPS53-213ENST00000572334 ANKRD55Q3KP44 614 aa4.95□□□□□ -1.62
VPS53-213ENST00000572334 COX19Q49B96 90 aa4.95□□□□□ -1.62
VPS53-213ENST00000572334 FAM90A2PQ658T7 463 aa4.95□□□□□ -1.62
VPS53-213ENST00000572334 CEMP1Q6PRD7 247 aaPredicted RBP4.95□□□□□ -1.62
VPS53-213ENST00000572334 RBPMS2Q6ZRY4 209 aaKnown RBP4.95□□□□□ -1.62
VPS53-213ENST00000572334 CCDC71LQ8N9Z2 235 aa4.95□□□□□ -1.62
VPS53-213ENST00000572334 OR1L8Q8NGR8 309 aa4.95□□□□□ -1.62
VPS53-213ENST00000572334 OR5B3Q8NH48 314 aa4.95□□□□□ -1.62
VPS53-213ENST00000572334 FAM213BQ8TBF2 198 aa4.95□□□□□ -1.62
VPS53-213ENST00000572334 TMEM170AQ8WVE7 144 aa4.95□□□□□ -1.62
VPS53-213ENST00000572334 RNF183Q96D59 192 aa4.95□□□□□ -1.62
VPS53-213ENST00000572334 SLC35E1Q96K37 410 aa4.95□□□□□ -1.62
VPS53-213ENST00000572334 SPAG8Q99932 426 aaPredicted RBP4.95□□□□□ -1.62
VPS53-213ENST00000572334 VPS25Q9BRG1 176 aa4.95□□□□□ -1.62
VPS53-213ENST00000572334 C20orf24Q9BUV8 137 aa4.95□□□□□ -1.62
VPS53-213ENST00000572334 VAMP8Q9BV40 100 aa4.95□□□□□ -1.62
VPS53-213ENST00000572334 COMMD5Q9GZQ3 224 aa4.95□□□□□ -1.62
VPS53-213ENST00000572334 MAP1LC3BQ9GZQ8 125 aa4.95□□□□□ -1.62
VPS53-213ENST00000572334 SEPSECSQ9HD40 501 aaKnown RBP4.95□□□□□ -1.62
VPS53-213ENST00000572334 FBXL17Q9UF56 701 aa4.95□□□□□ -1.62
VPS53-213ENST00000572334 GPR132Q9UNW8 380 aa4.95□□□□□ -1.62
VPS53-213ENST00000572334 UFC1Q9Y3C8 167 aa4.95□□□□□ -1.62
VPS53-213ENST00000572334 HERC2O95714 4834 aa4.95□□□□□ -1.62
VPS53-213ENST00000572334 DNAH17Q9UFH2 4485 aa4.95□□□□□ -1.62
VPS53-213ENST00000572334 TRAV9-1A0A075B6T8 112 aa4.94□□□□□ -1.62
VPS53-213ENST00000572334 IFITM10A6NMD0 228 aa4.94□□□□□ -1.62
VPS53-213ENST00000572334 ZNF705FA8MVS1 300 aaPredicted RBP4.94□□□□□ -1.62
VPS53-213ENST00000572334 I3L2K1 104 aa4.94□□□□□ -1.62
VPS53-213ENST00000572334 K7EMT4 169 aa4.94□□□□□ -1.62
VPS53-213ENST00000572334 M0QYG6 137 aa4.94□□□□□ -1.62
VPS53-213ENST00000572334 NDUFA4O00483 81 aa4.94□□□□□ -1.62
VPS53-213ENST00000572334 ST8SIA3O43173 380 aa4.94□□□□□ -1.62
VPS53-213ENST00000572334 LY6G6CO95867 125 aa4.94□□□□□ -1.62
VPS53-213ENST00000572334 AMBPP02760 352 aa4.94□□□□□ -1.62
VPS53-213ENST00000572334 CTSDP07339 412 aaPredicted RBP4.94□□□□□ -1.62
VPS53-213ENST00000572334 SRP19P09132 144 aaKnown RBP4.94□□□□□ -1.62
VPS53-213ENST00000572334 ZNF705DP0CH99 300 aaPredicted RBP4.94□□□□□ -1.62
VPS53-213ENST00000572334 ZNF705BP0CI00 300 aaPredicted RBP4.94□□□□□ -1.62
VPS53-213ENST00000572334 RPL35AP18077 110 aaKnown RBP4.94□□□□□ -1.62
VPS53-213ENST00000572334 G6PCP35575 357 aa4.94□□□□□ -1.62
VPS53-213ENST00000572334 RPL29P47914 159 aaKnown RBP4.94□□□□□ -1.62
VPS53-213ENST00000572334 CNN1P51911 297 aaKnown RBP4.94□□□□□ -1.62
VPS53-213ENST00000572334 UBE2V1Q13404 147 aa4.94□□□□□ -1.62
VPS53-213ENST00000572334 RAB32Q13637 225 aa4.94□□□□□ -1.62
VPS53-213ENST00000572334 AADACL3Q5VUY0 350 aa4.94□□□□□ -1.62
VPS53-213ENST00000572334 OR8G2PQ6IF36 304 aa4.94□□□□□ -1.62
VPS53-213ENST00000572334 SLC25A24Q6NUK1 477 aa4.94□□□□□ -1.62
VPS53-213ENST00000572334 SPSB3Q6PJ21 355 aa4.94□□□□□ -1.62
VPS53-213ENST00000572334 APRG1Q8IVJ8 170 aa4.94□□□□□ -1.62
VPS53-213ENST00000572334 RPP25LQ8N5L8 163 aaKnown RBP4.94□□□□□ -1.62
VPS53-213ENST00000572334 OR4C5Q8NGB2 326 aa4.94□□□□□ -1.62
VPS53-213ENST00000572334 KIR2DL5BQ8NHK3 375 aa4.94□□□□□ -1.62
VPS53-213ENST00000572334 LSM10Q969L4 123 aaKnown RBP4.94□□□□□ -1.62
VPS53-213ENST00000572334 PINX1Q96BK5 328 aaKnown RBP4.94□□□□□ -1.62
VPS53-213ENST00000572334 OR10C1Q96KK4 312 aa4.94□□□□□ -1.62
VPS53-213ENST00000572334 TP53RKQ96S44 253 aa4.94□□□□□ -1.62
VPS53-213ENST00000572334 ATP6V0BQ99437 205 aa4.94□□□□□ -1.62
VPS53-213ENST00000572334 RNF2Q99496 336 aa4.94□□□□□ -1.62
VPS53-213ENST00000572334 MAP6D1Q9H9H5 199 aa4.94□□□□□ -1.62
VPS53-213ENST00000572334 DAZ1Q9NQZ3 744 aaKnown RBP4.94□□□□□ -1.62
VPS53-213ENST00000572334 TMEM14BQ9NUH8 114 aa4.94□□□□□ -1.62
VPS53-213ENST00000572334 C21orf62Q9NYP8 219 aa4.94□□□□□ -1.62
VPS53-213ENST00000572334 EHFQ9NZC4 300 aa4.94□□□□□ -1.62
VPS53-213ENST00000572334 THYN1Q9P016 225 aa4.94□□□□□ -1.62
VPS53-213ENST00000572334 GSKIPQ9P0R6 139 aa4.94□□□□□ -1.62
VPS53-213ENST00000572334 UQCR10Q9UDW1 63 aa4.94□□□□□ -1.62
VPS53-213ENST00000572334 NAT8Q9UHE5 227 aa4.94□□□□□ -1.62
VPS53-213ENST00000572334 SMPXQ9UHP9 88 aa4.94□□□□□ -1.62
VPS53-213ENST00000572334 OR51B2Q9Y5P1 312 aa4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 93.4 ms