RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 IGKV3-20P01619 116 aa6.7□□□□□ -1.34
VPS35-206ENST00000565228 HLA-DRB4P13762 266 aa6.7□□□□□ -1.34
VPS35-206ENST00000565228 PSMB3P49720 205 aa6.7□□□□□ -1.34
VPS35-206ENST00000565228 FGL1Q08830 312 aa6.7□□□□□ -1.34
VPS35-206ENST00000565228 LCE2AQ5TA79 106 aaPredicted RBP6.7□□□□□ -1.34
VPS35-206ENST00000565228 PXDC1Q5TGL8 231 aa6.7□□□□□ -1.34
VPS35-206ENST00000565228 RPL7L1Q6DKI1 246 aaKnown RBP6.7□□□□□ -1.34
VPS35-206ENST00000565228 SSX7Q7RTT5 188 aa6.7□□□□□ -1.34
VPS35-206ENST00000565228 KIR2DL5AQ8N109 375 aa6.7□□□□□ -1.34
VPS35-206ENST00000565228 KIR2DL5BQ8NHK3 375 aa6.7□□□□□ -1.34
VPS35-206ENST00000565228 PARD6GQ9BYG4 376 aaPredicted RBP6.7□□□□□ -1.34
VPS35-206ENST00000565228 CSTL1Q9H114 145 aa6.7□□□□□ -1.34
VPS35-206ENST00000565228 SLC35B3Q9H1N7 401 aa6.7□□□□□ -1.34
VPS35-206ENST00000565228 SH3BGRL3Q9H299 93 aa6.7□□□□□ -1.34
VPS35-206ENST00000565228 ZNF331Q9NQX6 463 aaPredicted RBP6.7□□□□□ -1.34
VPS35-206ENST00000565228 HLA-DRB4X5D2U9 266 aa6.7□□□□□ -1.34
VPS35-206ENST00000565228 FXYD6-FXYD2A0A087WZ82 144 aa6.69□□□□□ -1.34
VPS35-206ENST00000565228 ISLRO14498 428 aa6.69□□□□□ -1.34
VPS35-206ENST00000565228 MPDU1O75352 247 aa6.69□□□□□ -1.34
VPS35-206ENST00000565228 CA1P00915 261 aaPredicted RBP6.69□□□□□ -1.34
VPS35-206ENST00000565228 PRM2P04554 102 aa6.69□□□□□ -1.34
VPS35-206ENST00000565228 PET100P0DJ07 73 aa6.69□□□□□ -1.34
VPS35-206ENST00000565228 RBMY1A1P0DJD3 496 aaKnown RBP6.69□□□□□ -1.34
VPS35-206ENST00000565228 RBMY1CP0DJD4 496 aa6.69□□□□□ -1.34
VPS35-206ENST00000565228 RPL7P18124 248 aaKnown RBP6.69□□□□□ -1.34
VPS35-206ENST00000565228 CXCL2P19875 107 aa6.69□□□□□ -1.34
VPS35-206ENST00000565228 NUP62P37198 522 aaPredicted RBP6.69□□□□□ -1.34
VPS35-206ENST00000565228 GALR1P47211 349 aa6.69□□□□□ -1.34
VPS35-206ENST00000565228 RAB2AP61019 212 aa6.69□□□□□ -1.34
VPS35-206ENST00000565228 KIR3DS1Q14943 382 aa6.69□□□□□ -1.34
VPS35-206ENST00000565228 RBMY1FQ15415 496 aaKnown RBP6.69□□□□□ -1.34
VPS35-206ENST00000565228 FAM78BQ5VT40 261 aa6.69□□□□□ -1.34
VPS35-206ENST00000565228 Q6ZWC4 215 aa6.69□□□□□ -1.34
VPS35-206ENST00000565228 FXYD5Q96DB9 178 aa6.69□□□□□ -1.34
VPS35-206ENST00000565228 C16orf92Q96LL3 132 aa6.69□□□□□ -1.34
VPS35-206ENST00000565228 WWC2-AS2Q96NR7 200 aa6.69□□□□□ -1.34
VPS35-206ENST00000565228 ZMAT4Q9H898 229 aa6.69□□□□□ -1.34
VPS35-206ENST00000565228 X6R8D5 127 aa6.69□□□□□ -1.34
VPS35-206ENST00000565228 HERC2O95714 4834 aa6.68□□□□□ -1.34
VPS35-206ENST00000565228 ELOA3CA0A087WX78 387 aaPredicted RBP6.68□□□□□ -1.34
VPS35-206ENST00000565228 M0R3E3 92 aa6.68□□□□□ -1.34
VPS35-206ENST00000565228 CRXO43186 299 aaPredicted RBP6.68□□□□□ -1.34
VPS35-206ENST00000565228 SPRY2O43597 315 aa6.68□□□□□ -1.34
VPS35-206ENST00000565228 ATP6V0CP27449 155 aa6.68□□□□□ -1.34
VPS35-206ENST00000565228 CMC4P56277 68 aaPredicted RBP6.68□□□□□ -1.34
VPS35-206ENST00000565228 FFAR4Q5NUL3 377 aa6.68□□□□□ -1.34
VPS35-206ENST00000565228 FOXI2Q6ZQN5 318 aa6.68□□□□□ -1.34
VPS35-206ENST00000565228 Q6ZRG5 221 aa6.68□□□□□ -1.34
VPS35-206ENST00000565228 STHQ8IWL8 128 aa6.68□□□□□ -1.34
VPS35-206ENST00000565228 HSD17B11Q8NBQ5 300 aa6.68□□□□□ -1.34
VPS35-206ENST00000565228 GATAD1Q8WUU5 269 aa6.68□□□□□ -1.34
VPS35-206ENST00000565228 GPR82Q96P67 336 aa6.68□□□□□ -1.34
VPS35-206ENST00000565228 ALMS1Q8TCU4 4167 aa6.67□□□□□ -1.34
VPS35-206ENST00000565228 TRBV19A0A075B6N1 114 aa6.67□□□□□ -1.34
VPS35-206ENST00000565228 A0A0J9YWU9 116 aa6.67□□□□□ -1.34
VPS35-206ENST00000565228 DEFB4AO15263 64 aa6.67□□□□□ -1.34
VPS35-206ENST00000565228 ARPC5O15511 151 aa6.67□□□□□ -1.34
VPS35-206ENST00000565228 OR10J4P0C629 311 aa6.67□□□□□ -1.34
VPS35-206ENST00000565228 ATF4P18848 351 aaPredicted RBP6.67□□□□□ -1.34
VPS35-206ENST00000565228 CNN1P51911 297 aaKnown RBP6.67□□□□□ -1.34
VPS35-206ENST00000565228 APOC4P55056 127 aa6.67□□□□□ -1.34
VPS35-206ENST00000565228 SNRPD3P62318 126 aaKnown RBP6.67□□□□□ -1.34
VPS35-206ENST00000565228 RAB31Q13636 194 aa6.67□□□□□ -1.34
VPS35-206ENST00000565228 ZNF726P1Q15940 193 aa6.67□□□□□ -1.34
VPS35-206ENST00000565228 PSG3Q16557 428 aa6.67□□□□□ -1.34
VPS35-206ENST00000565228 C1orf158Q8N1D5 194 aa6.67□□□□□ -1.34
VPS35-206ENST00000565228 EXOC3-AS1Q8N2X6 119 aa6.67□□□□□ -1.34
VPS35-206ENST00000565228 Q8NAQ8 132 aa6.67□□□□□ -1.34
VPS35-206ENST00000565228 OR1L4Q8NGR5 311 aa6.67□□□□□ -1.34
VPS35-206ENST00000565228 PHYHIPLQ96FC7 376 aa6.67□□□□□ -1.34
VPS35-206ENST00000565228 PFDN5Q99471 154 aa6.67□□□□□ -1.34
VPS35-206ENST00000565228 HRH4Q9H3N8 390 aa6.67□□□□□ -1.34
VPS35-206ENST00000565228 TMEM14CQ9P0S9 112 aa6.67□□□□□ -1.34
VPS35-206ENST00000565228 XCL2Q9UBD3 114 aa6.67□□□□□ -1.34
VPS35-206ENST00000565228 FUT9Q9Y231 359 aa6.67□□□□□ -1.34
VPS35-206ENST00000565228 TP53TG1Q9Y2A0 90 aa6.67□□□□□ -1.34
VPS35-206ENST00000565228 hCG_2014768A0A024R1R8 64 aa6.66□□□□□ -1.34
VPS35-206ENST00000565228 ZNF705EA8MWA4 302 aaPredicted RBP6.66□□□□□ -1.34
VPS35-206ENST00000565228 UBE2CO00762 179 aa6.66□□□□□ -1.34
VPS35-206ENST00000565228 HMGB3O15347 200 aaKnown RBP6.66□□□□□ -1.34
VPS35-206ENST00000565228 MEOX2P50222 304 aa6.66□□□□□ -1.34
VPS35-206ENST00000565228 Q6ZQT7 251 aa6.66□□□□□ -1.34
VPS35-206ENST00000565228 BPIFA4PQ86YQ2 179 aa6.66□□□□□ -1.34
VPS35-206ENST00000565228 RPP25LQ8N5L8 163 aaKnown RBP6.66□□□□□ -1.34
VPS35-206ENST00000565228 OR4B1Q8NGF8 309 aa6.66□□□□□ -1.34
VPS35-206ENST00000565228 OR11H2Q8NH07 326 aa6.66□□□□□ -1.34
VPS35-206ENST00000565228 ASB13Q8WXK3 278 aa6.66□□□□□ -1.34
VPS35-206ENST00000565228 CLUHP3Q96NS8 147 aa6.66□□□□□ -1.34
VPS35-206ENST00000565228 PFDN2Q9UHV9 154 aa6.66□□□□□ -1.34
VPS35-206ENST00000565228 TIMM9Q9Y5J7 89 aa6.66□□□□□ -1.34
VPS35-206ENST00000565228 TENM2Q9NT68 2774 aa6.66□□□□□ -1.34
VPS35-206ENST00000565228 KMT2AQ03164 3969 aa6.66□□□□□ -1.34
VPS35-206ENST00000565228 TRAV12-2A0A075B6T6 113 aa6.65□□□□□ -1.34
VPS35-206ENST00000565228 M0R2Z0 102 aa6.65□□□□□ -1.34
VPS35-206ENST00000565228 IFNA5P01569 189 aa6.65□□□□□ -1.34
VPS35-206ENST00000565228 HIST1H1EP10412 219 aaKnown RBP6.65□□□□□ -1.34
VPS35-206ENST00000565228 ID1P41134 155 aa6.65□□□□□ -1.34
VPS35-206ENST00000565228 ERCC8Q13216 396 aa6.65□□□□□ -1.34
VPS35-206ENST00000565228 ZFAND6Q6FIF0 208 aa6.65□□□□□ -1.34
VPS35-206ENST00000565228 ZNF705AQ6ZN79 300 aaPredicted RBP6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms