RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 PHLDA1Q8WV24 401 aaPredicted RBP7.43□□□□□ -1.22
CCDC88C-206ENST00000553437 TMEM37Q8WXS4 190 aa7.43□□□□□ -1.22
CCDC88C-206ENST00000553437 C16orf92Q96LL3 132 aa7.43□□□□□ -1.22
CCDC88C-206ENST00000553437 ARL6Q9H0F7 186 aa7.43□□□□□ -1.22
CCDC88C-206ENST00000553437 ARV1Q9H2C2 271 aa7.43□□□□□ -1.22
CCDC88C-206ENST00000553437 XCL2Q9UBD3 114 aa7.43□□□□□ -1.22
CCDC88C-206ENST00000553437 WDR83OSQ9Y284 106 aa7.43□□□□□ -1.22
CCDC88C-206ENST00000553437 ELOA3CA0A087WX78 387 aaPredicted RBP7.42□□□□□ -1.22
CCDC88C-206ENST00000553437 A0A087X0K7 114 aa7.42□□□□□ -1.22
CCDC88C-206ENST00000553437 A8MTW9 85 aa7.42□□□□□ -1.22
CCDC88C-206ENST00000553437 GOSR2O14653 212 aa7.42□□□□□ -1.22
CCDC88C-206ENST00000553437 IGKV3-20P01619 116 aa7.42□□□□□ -1.22
CCDC88C-206ENST00000553437 GIPP09681 153 aaPredicted RBP7.42□□□□□ -1.22
CCDC88C-206ENST00000553437 RPL7P18124 248 aaKnown RBP7.42□□□□□ -1.22
CCDC88C-206ENST00000553437 PVALBP20472 110 aaPredicted RBP7.42□□□□□ -1.22
CCDC88C-206ENST00000553437 SULT1A1P50225 295 aa7.42□□□□□ -1.22
CCDC88C-206ENST00000553437 FAM78BQ5VT40 261 aa7.42□□□□□ -1.22
CCDC88C-206ENST00000553437 SPATA31B1PQ5VZV4 182 aa7.42□□□□□ -1.22
CCDC88C-206ENST00000553437 IGFL4Q6B9Z1 124 aa7.42□□□□□ -1.22
CCDC88C-206ENST00000553437 ZNF705AQ6ZN79 300 aaPredicted RBP7.42□□□□□ -1.22
CCDC88C-206ENST00000553437 C1QTNF4Q9BXJ3 329 aa7.42□□□□□ -1.22
CCDC88C-206ENST00000553437 RPRMQ9NS64 109 aa7.42□□□□□ -1.22
CCDC88C-206ENST00000553437 AGRNO00468 2067 aa7.42□□□□□ -1.22
CCDC88C-206ENST00000553437 PCLOQ9Y6V0 5065 aa7.42□□□□□ -1.22
CCDC88C-206ENST00000553437 VPS13DQ5THJ4 4388 aa7.41□□□□□ -1.22
CCDC88C-206ENST00000553437 H0YIZ8 118 aa7.41□□□□□ -1.22
CCDC88C-206ENST00000553437 CXCL3P19876 107 aa7.41□□□□□ -1.22
CCDC88C-206ENST00000553437 S100A11P31949 105 aa7.41□□□□□ -1.22
CCDC88C-206ENST00000553437 CAMLGP49069 296 aa7.41□□□□□ -1.22
CCDC88C-206ENST00000553437 FXYD7P58549 80 aa7.41□□□□□ -1.22
CCDC88C-206ENST00000553437 PSG9Q00887 426 aa7.41□□□□□ -1.22
CCDC88C-206ENST00000553437 MORN5Q5VZ52 161 aa7.41□□□□□ -1.22
CCDC88C-206ENST00000553437 EBLN2Q6P2I7 272 aa7.41□□□□□ -1.22
CCDC88C-206ENST00000553437 AMTNQ6UX39 209 aa7.41□□□□□ -1.22
CCDC88C-206ENST00000553437 LINC00305Q7Z4B0 112 aa7.41□□□□□ -1.22
CCDC88C-206ENST00000553437 RNF182Q8N6D2 247 aa7.41□□□□□ -1.22
CCDC88C-206ENST00000553437 OR4B1Q8NGF8 309 aa7.41□□□□□ -1.22
CCDC88C-206ENST00000553437 ASB13Q8WXK3 278 aa7.41□□□□□ -1.22
CCDC88C-206ENST00000553437 NMES1Q9C002 83 aa7.41□□□□□ -1.22
CCDC88C-206ENST00000553437 MFFQ9GZY8 342 aa7.41□□□□□ -1.22
CCDC88C-206ENST00000553437 SLC35B3Q9H1N7 401 aa7.41□□□□□ -1.22
CCDC88C-206ENST00000553437 HRH4Q9H3N8 390 aa7.41□□□□□ -1.22
CCDC88C-206ENST00000553437 UQCC1Q9NVA1 299 aa7.41□□□□□ -1.22
CCDC88C-206ENST00000553437 FRAS1Q86XX4 4008 aa7.4□□□□□ -1.22
CCDC88C-206ENST00000553437 ZNF705FA8MVS1 300 aaPredicted RBP7.4□□□□□ -1.22
CCDC88C-206ENST00000553437 ZNF705DP0CH99 300 aaPredicted RBP7.4□□□□□ -1.22
CCDC88C-206ENST00000553437 ZNF705BP0CI00 300 aaPredicted RBP7.4□□□□□ -1.22
CCDC88C-206ENST00000553437 HLA-DMBP28068 263 aa7.4□□□□□ -1.22
CCDC88C-206ENST00000553437 H2BFSP57053 126 aa7.4□□□□□ -1.22
CCDC88C-206ENST00000553437 FGL1Q08830 312 aa7.4□□□□□ -1.22
CCDC88C-206ENST00000553437 ATP6V1FQ16864 119 aa7.4□□□□□ -1.22
CCDC88C-206ENST00000553437 MIC13Q5XKP0 118 aa7.4□□□□□ -1.22
CCDC88C-206ENST00000553437 S100A7AQ86SG5 101 aa7.4□□□□□ -1.22
CCDC88C-206ENST00000553437 LINC00476Q8WZB0 136 aa7.4□□□□□ -1.22
CCDC88C-206ENST00000553437 NEU1Q99519 415 aa7.4□□□□□ -1.22
CCDC88C-206ENST00000553437 OR5AC2Q9NZP5 309 aa7.4□□□□□ -1.22
CCDC88C-206ENST00000553437 KLK5Q9Y337 293 aaPredicted RBP7.4□□□□□ -1.22
CCDC88C-206ENST00000553437 UBE2L5PA0A1B0GUS4 154 aa7.39□□□□□ -1.23
CCDC88C-206ENST00000553437 COX7A2P2O60397 106 aa7.39□□□□□ -1.23
CCDC88C-206ENST00000553437 IFNA7P01567 189 aa7.39□□□□□ -1.23
CCDC88C-206ENST00000553437 RPL29P47914 159 aaKnown RBP7.39□□□□□ -1.23
CCDC88C-206ENST00000553437 CNN1P51911 297 aaKnown RBP7.39□□□□□ -1.23
CCDC88C-206ENST00000553437 HBG1P69891 147 aa7.39□□□□□ -1.23
CCDC88C-206ENST00000553437 HBG2P69892 147 aa7.39□□□□□ -1.23
CCDC88C-206ENST00000553437 NHLH2Q02577 135 aa7.39□□□□□ -1.23
CCDC88C-206ENST00000553437 RAB31Q13636 194 aa7.39□□□□□ -1.23
CCDC88C-206ENST00000553437 OPCMLQ14982 345 aa7.39□□□□□ -1.23
CCDC88C-206ENST00000553437 STX12Q86Y82 276 aa7.39□□□□□ -1.23
CCDC88C-206ENST00000553437 C1orf158Q8N1D5 194 aa7.39□□□□□ -1.23
CCDC88C-206ENST00000553437 OR11H4Q8NGC9 324 aa7.39□□□□□ -1.23
CCDC88C-206ENST00000553437 OR2T35Q8NGX2 323 aa7.39□□□□□ -1.23
CCDC88C-206ENST00000553437 DNAJC4Q9NNZ3 241 aa7.39□□□□□ -1.23
CCDC88C-206ENST00000553437 RNF24Q9Y225 148 aa7.39□□□□□ -1.23
CCDC88C-206ENST00000553437 TRAV5A0A0B4J249 113 aa7.38□□□□□ -1.23
CCDC88C-206ENST00000553437 E5RGE8 158 aa7.38□□□□□ -1.23
CCDC88C-206ENST00000553437 DUSP14O95147 198 aaKnown RBP7.38□□□□□ -1.23
CCDC88C-206ENST00000553437 SNRPCP09234 159 aaKnown RBP7.38□□□□□ -1.23
CCDC88C-206ENST00000553437 IGLC2P0DOY2 106 aa7.38□□□□□ -1.23
CCDC88C-206ENST00000553437 CYCSP99999 105 aaKnown RBP7.38□□□□□ -1.23
CCDC88C-206ENST00000553437 PSG3Q16557 428 aa7.38□□□□□ -1.23
CCDC88C-206ENST00000553437 LGALSLQ3ZCW2 172 aaPredicted RBP7.38□□□□□ -1.23
CCDC88C-206ENST00000553437 LRRC37A5PQ49AS3 106 aa7.38□□□□□ -1.23
CCDC88C-206ENST00000553437 C10orf113Q5VZT2 155 aa7.38□□□□□ -1.23
CCDC88C-206ENST00000553437 TEX261Q6UWH6 196 aa7.38□□□□□ -1.23
CCDC88C-206ENST00000553437 Q6ZRG5 221 aa7.38□□□□□ -1.23
CCDC88C-206ENST00000553437 ZNF738Q8NE65 137 aa7.38□□□□□ -1.23
CCDC88C-206ENST00000553437 RNF126Q9BV68 326 aa7.38□□□□□ -1.23
CCDC88C-206ENST00000553437 ZNF331Q9NQX6 463 aaPredicted RBP7.38□□□□□ -1.23
CCDC88C-206ENST00000553437 SLC39A9Q9NUM3 307 aa7.38□□□□□ -1.23
CCDC88C-206ENST00000553437 CELA1Q9UNI1 258 aa7.38□□□□□ -1.23
CCDC88C-206ENST00000553437 LINC00862A6NCI5 91 aa7.37□□□□□ -1.23
CCDC88C-206ENST00000553437 SMIM9A6NGZ8 99 aa7.37□□□□□ -1.23
CCDC88C-206ENST00000553437 G3V3Q6 166 aa7.37□□□□□ -1.23
CCDC88C-206ENST00000553437 H3BQ15 152 aa7.37□□□□□ -1.23
CCDC88C-206ENST00000553437 SLC17A3O00476 420 aa7.37□□□□□ -1.23
CCDC88C-206ENST00000553437 CRXO43186 299 aaPredicted RBP7.37□□□□□ -1.23
CCDC88C-206ENST00000553437 RLN2P04090 185 aa7.37□□□□□ -1.23
CCDC88C-206ENST00000553437 CXCL2P19875 107 aa7.37□□□□□ -1.23
CCDC88C-206ENST00000553437 FGF7P21781 194 aa7.37□□□□□ -1.23
CCDC88C-206ENST00000553437 B2MP61769 119 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 121.5 ms