RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	MUC5B	Q9HC84	5762 aa	Predicted RBP	0.79	□□□□□ -2.28
CD44-238	ENST00000534296	C17orf112	F2Z3M2	114 aa		0.79	□□□□□ -2.28
CD44-238	ENST00000534296	TAX1BP3	O14907	124 aa		0.79	□□□□□ -2.28
CD44-238	ENST00000534296	ATG12	O94817	140 aa		0.79	□□□□□ -2.28
CD44-238	ENST00000534296	IFNA14	P01570	189 aa		0.79	□□□□□ -2.28
CD44-238	ENST00000534296	PPP1R2	P41236	205 aa		0.79	□□□□□ -2.28
CD44-238	ENST00000534296	NCALD	P61601	193 aa		0.79	□□□□□ -2.28
CD44-238	ENST00000534296	HSPE1	P61604	102 aa	Known RBP	0.79	□□□□□ -2.28
CD44-238	ENST00000534296	PDZD9	Q8IXQ8	264 aa		0.79	□□□□□ -2.28
CD44-238	ENST00000534296	OR4K15	Q8NH41	348 aa		0.79	□□□□□ -2.28
CD44-238	ENST00000534296	OBSCN-AS1	Q96MR7	158 aa		0.79	□□□□□ -2.28
CD44-238	ENST00000534296	NPCDR1	Q9BY65	106 aa		0.79	□□□□□ -2.28
CD44-238	ENST00000534296	TMEM133	Q9H2Q1	129 aa		0.79	□□□□□ -2.28
CD44-238	ENST00000534296	ORMDL1	Q9P0S3	153 aa		0.79	□□□□□ -2.28
CD44-238	ENST00000534296	SSR3	Q9UNL2	185 aa		0.79	□□□□□ -2.28
CD44-238	ENST00000534296	NUP98	P52948	1817 aa		0.79	□□□□□ -2.28
CD44-238	ENST00000534296	CRYBG3	Q68DQ2	2970 aa		0.79	□□□□□ -2.28
CD44-238	ENST00000534296	HTT	P42858	3142 aa		0.79	□□□□□ -2.28
CD44-238	ENST00000534296	KDM6A	O15550	1401 aa	Predicted RBP	0.79	□□□□□ -2.28
CD44-238	ENST00000534296	GOLGB1	Q14789	3259 aa	Known RBP	0.79	□□□□□ -2.28
CD44-238	ENST00000534296	RAPGEF6	Q8TEU7	1601 aa		0.78	□□□□□ -2.28
CD44-238	ENST00000534296	DMBT1	Q9UGM3	2413 aa	Predicted RBP	0.78	□□□□□ -2.28
CD44-238	ENST00000534296	CELSR2	Q9HCU4	2923 aa		0.78	□□□□□ -2.28
CD44-238	ENST00000534296	IGLV3-32	A0A0A0MS00	114 aa		0.78	□□□□□ -2.28
CD44-238	ENST00000534296	TRAV4	A0A0B4J268	109 aa		0.78	□□□□□ -2.28
CD44-238	ENST00000534296	DUXB	A0A1W2PPF3	345 aa		0.78	□□□□□ -2.28
CD44-238	ENST00000534296		H3BRM9	83 aa		0.78	□□□□□ -2.28
CD44-238	ENST00000534296		H7C1C5	153 aa		0.78	□□□□□ -2.28
CD44-238	ENST00000534296		M0R2N4	97 aa		0.78	□□□□□ -2.28
CD44-238	ENST00000534296	NCR3	O14931	201 aa		0.78	□□□□□ -2.28
CD44-238	ENST00000534296	C1QB	P02746	253 aa		0.78	□□□□□ -2.28
CD44-238	ENST00000534296	IFNA4	P05014	189 aa		0.78	□□□□□ -2.28
CD44-238	ENST00000534296	OR10J4	P0C629	311 aa		0.78	□□□□□ -2.28
CD44-238	ENST00000534296	NFYB	P25208	207 aa		0.78	□□□□□ -2.28
CD44-238	ENST00000534296	ATP5G3	P48201	142 aa		0.78	□□□□□ -2.28
CD44-238	ENST00000534296	LCN6	P62502	163 aa		0.78	□□□□□ -2.28
CD44-238	ENST00000534296	DEFB113	Q30KQ7	82 aa		0.78	□□□□□ -2.28
CD44-238	ENST00000534296	HACD4	Q5VWC8	232 aa		0.78	□□□□□ -2.28
CD44-238	ENST00000534296	TMED4	Q7Z7H5	227 aa		0.78	□□□□□ -2.28
CD44-238	ENST00000534296	OR10K1	Q8NGX5	313 aa		0.78	□□□□□ -2.28
CD44-238	ENST00000534296	OR13C6P	Q8NH95	151 aa		0.78	□□□□□ -2.28
CD44-238	ENST00000534296	PPTC7	Q8NI37	304 aa		0.78	□□□□□ -2.28
CD44-238	ENST00000534296	STAG3L4	Q8TBR4	150 aa		0.78	□□□□□ -2.28
CD44-238	ENST00000534296	ADAT3	Q96EY9	351 aa	Predicted RBP	0.78	□□□□□ -2.28
CD44-238	ENST00000534296	TEX37	Q96LM6	180 aa		0.78	□□□□□ -2.28
CD44-238	ENST00000534296	HEATR1	Q9H583	2144 aa	Known RBP	0.78	□□□□□ -2.28
CD44-238	ENST00000534296	ARMC1	Q9NVT9	282 aa		0.78	□□□□□ -2.28
CD44-238	ENST00000534296	EIF3A	Q14152	1382 aa	Known RBP	0.78	□□□□□ -2.28
CD44-238	ENST00000534296	FAT4	Q6V0I7	4981 aa		0.78	□□□□□ -2.29
CD44-238	ENST00000534296	ADGB	Q8N7X0	1667 aa		0.78	□□□□□ -2.29
CD44-238	ENST00000534296	PRRC2C	Q9Y520	2896 aa	Known RBP	0.78	□□□□□ -2.29
CD44-238	ENST00000534296	FSIP2	Q5CZC0	6907 aa		0.78	□□□□□ -2.29
CD44-238	ENST00000534296	BRCA2	P51587	3418 aa		0.77	□□□□□ -2.29
CD44-238	ENST00000534296	RIIAD1	A6NNX1	92 aa		0.77	□□□□□ -2.29
CD44-238	ENST00000534296		F8W1H4	67 aa		0.77	□□□□□ -2.29
CD44-238	ENST00000534296		M0R233	179 aa		0.77	□□□□□ -2.29
CD44-238	ENST00000534296	INE1	O15225	51 aa		0.77	□□□□□ -2.29
CD44-238	ENST00000534296	ERC2-IT1	O76042	136 aa		0.77	□□□□□ -2.29
CD44-238	ENST00000534296	HLA-E	P13747	358 aa		0.77	□□□□□ -2.29
CD44-238	ENST00000534296	ZNF25	P17030	456 aa	Predicted RBP	0.77	□□□□□ -2.29
CD44-238	ENST00000534296	SRI	P30626	198 aa		0.77	□□□□□ -2.29
CD44-238	ENST00000534296	PHB	P35232	272 aa		0.77	□□□□□ -2.29
CD44-238	ENST00000534296	ARF6	P62330	175 aa		0.77	□□□□□ -2.29
CD44-238	ENST00000534296	CNBP	P62633	177 aa	Known RBP	0.77	□□□□□ -2.29
CD44-238	ENST00000534296	CDK6	Q00534	326 aa		0.77	□□□□□ -2.29
CD44-238	ENST00000534296	KRTAP20-1	Q3LI63	56 aa		0.77	□□□□□ -2.29
CD44-238	ENST00000534296	PXT1	Q8NFP0	134 aa		0.77	□□□□□ -2.29
CD44-238	ENST00000534296	MALSU1	Q96EH3	234 aa		0.77	□□□□□ -2.29
CD44-238	ENST00000534296	AMELY	Q99218	206 aa		0.77	□□□□□ -2.29
CD44-238	ENST00000534296	OR2J1	Q9GZK6	312 aa		0.77	□□□□□ -2.29
CD44-238	ENST00000534296	PBOV1	Q9GZY1	135 aa		0.77	□□□□□ -2.29
CD44-238	ENST00000534296	TAS2R7	Q9NYW3	318 aa		0.77	□□□□□ -2.29
CD44-238	ENST00000534296	OR52A1	Q9UKL2	312 aa		0.77	□□□□□ -2.29
CD44-238	ENST00000534296	TNFSF18	Q9UNG2	199 aa		0.77	□□□□□ -2.29
CD44-238	ENST00000534296	TRPM1	Q7Z4N2	1603 aa		0.77	□□□□□ -2.29
CD44-238	ENST00000534296	MYLK	Q15746	1914 aa		0.77	□□□□□ -2.29
CD44-238	ENST00000534296	KIAA1549	Q9HCM3	1950 aa		0.77	□□□□□ -2.29
CD44-238	ENST00000534296	NCOA6	Q14686	2063 aa	Predicted RBP	0.77	□□□□□ -2.29
CD44-238	ENST00000534296	SSPO	A2VEC9	5147 aa		0.76	□□□□□ -2.29
CD44-238	ENST00000534296	LRBA	P50851	2863 aa		0.76	□□□□□ -2.29
CD44-238	ENST00000534296	ALPK3	Q96L96	1907 aa		0.76	□□□□□ -2.29
CD44-238	ENST00000534296	TAF1L	Q8IZX4	1826 aa		0.76	□□□□□ -2.29
CD44-238	ENST00000534296	TRAV10	A0A0B4J240	114 aa		0.76	□□□□□ -2.29
CD44-238	ENST00000534296	OR2T8	A6NH00	312 aa		0.76	□□□□□ -2.29
CD44-238	ENST00000534296	CCL16	O15467	120 aa		0.76	□□□□□ -2.29
CD44-238	ENST00000534296	PFDN1	O60925	122 aa		0.76	□□□□□ -2.29
CD44-238	ENST00000534296	CD2	P06729	351 aa		0.76	□□□□□ -2.29
CD44-238	ENST00000534296	RNASE4	P34096	147 aa	Known RBP	0.76	□□□□□ -2.29
CD44-238	ENST00000534296	RAB5C	P51148	216 aa		0.76	□□□□□ -2.29
CD44-238	ENST00000534296	DYNLT3	P51808	116 aa		0.76	□□□□□ -2.29
CD44-238	ENST00000534296	RPL19	P84098	196 aa	Known RBP	0.76	□□□□□ -2.29
CD44-238	ENST00000534296	DHRS4L2	Q6PKH6	230 aa		0.76	□□□□□ -2.29
CD44-238	ENST00000534296	S100A7A	Q86SG5	101 aa		0.76	□□□□□ -2.29
CD44-238	ENST00000534296	NEK7	Q8TDX7	302 aa		0.76	□□□□□ -2.29
CD44-238	ENST00000534296	MUCL1	Q96DR8	90 aa		0.76	□□□□□ -2.29
CD44-238	ENST00000534296	MAP1LC3B	Q9GZQ8	125 aa		0.76	□□□□□ -2.29
CD44-238	ENST00000534296	PSTPIP2	Q9H939	334 aa		0.76	□□□□□ -2.29
CD44-238	ENST00000534296	TMEM138	Q9NPI0	162 aa		0.76	□□□□□ -2.29
CD44-238	ENST00000534296	MED29	Q9NX70	200 aa		0.76	□□□□□ -2.29
CD44-238	ENST00000534296	PCTP	Q9UKL6	214 aa		0.76	□□□□□ -2.29

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