RNA–Protein interactions for RNA: ENST00000531727.5

CPSF1-207, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3 BASIC

Gene CPSF1, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-207ENST00000531727 TRAV12-2A0A075B6T6 113 aa11.89□□□□□ -0.51
CPSF1-207ENST00000531727 PSG3Q16557 428 aa11.89□□□□□ -0.51
CPSF1-207ENST00000531727 PXDC1Q5TGL8 231 aa11.89□□□□□ -0.51
CPSF1-207ENST00000531727 Q6ZR54 194 aa11.89□□□□□ -0.51
CPSF1-207ENST00000531727 LRRC20Q8TCA0 184 aa11.89□□□□□ -0.51
CPSF1-207ENST00000531727 ARV1Q9H2C2 271 aa11.89□□□□□ -0.51
CPSF1-207ENST00000531727 GSKIPQ9P0R6 139 aa11.89□□□□□ -0.51
CPSF1-207ENST00000531727 MRPS12O15235 138 aaKnown RBP11.88□□□□□ -0.51
CPSF1-207ENST00000531727 IL7P13232 177 aa11.88□□□□□ -0.51
CPSF1-207ENST00000531727 RHOBP62745 196 aa11.88□□□□□ -0.51
CPSF1-207ENST00000531727 ARL16Q0P5N6 197 aa11.88□□□□□ -0.51
CPSF1-207ENST00000531727 CNPY1Q3B7I2 92 aa11.88□□□□□ -0.51
CPSF1-207ENST00000531727 ZNF546Q86UE3 836 aa11.88□□□□□ -0.51
CPSF1-207ENST00000531727 C15orf53Q8NAA6 179 aa11.88□□□□□ -0.51
CPSF1-207ENST00000531727 GGACTQ9BVM4 153 aa11.88□□□□□ -0.51
CPSF1-207ENST00000531727 PLAC8L1A1L4L8 177 aa11.87□□□□□ -0.51
CPSF1-207ENST00000531727 GOSR2O14653 212 aa11.87□□□□□ -0.51
CPSF1-207ENST00000531727 AGPAT2O15120 278 aa11.87□□□□□ -0.51
CPSF1-207ENST00000531727 MBPP02686 304 aaPredicted RBP11.87□□□□□ -0.51
CPSF1-207ENST00000531727 CXCL2P19875 107 aa11.87□□□□□ -0.51
CPSF1-207ENST00000531727 AZU1P20160 251 aa11.87□□□□□ -0.51
CPSF1-207ENST00000531727 TMEM256Q8N2U0 113 aa11.87□□□□□ -0.51
CPSF1-207ENST00000531727 PPP1R14DQ9NXH3 145 aa11.87□□□□□ -0.51
CPSF1-207ENST00000531727 C7orf66A4D0T2 115 aa11.86□□□□□ -0.51
CPSF1-207ENST00000531727 DEFB130BP0DP73 79 aa11.86□□□□□ -0.51
CPSF1-207ENST00000531727 DEFB130AP0DP74 79 aa11.86□□□□□ -0.51
CPSF1-207ENST00000531727 LCN15Q6UWW0 184 aa11.86□□□□□ -0.51
CPSF1-207ENST00000531727 LINC00305Q7Z4B0 112 aa11.86□□□□□ -0.51
CPSF1-207ENST00000531727 RPUSD4Q96CM3 377 aaKnown RBP11.86□□□□□ -0.51
CPSF1-207ENST00000531727 LINC01587Q99440 93 aa11.86□□□□□ -0.51
CPSF1-207ENST00000531727 C20orf85Q9H1P6 137 aa11.86□□□□□ -0.51
CPSF1-207ENST00000531727 ZNF331Q9NQX6 463 aaPredicted RBP11.86□□□□□ -0.51
CPSF1-207ENST00000531727 PKD1P98161 4303 aa11.86□□□□□ -0.51
CPSF1-207ENST00000531727 NACAE9PAV3 2078 aa11.86□□□□□ -0.51
CPSF1-207ENST00000531727 KIAA1109Q2LD37 5005 aa11.86□□□□□ -0.51
CPSF1-207ENST00000531727 PRB4P10163 310 aaPredicted RBP11.85□□□□□ -0.51
CPSF1-207ENST00000531727 FAM3BP58499 235 aaPredicted RBP11.85□□□□□ -0.51
CPSF1-207ENST00000531727 TAS2R60P59551 318 aa11.85□□□□□ -0.51
CPSF1-207ENST00000531727 MGST2Q99735 147 aa11.85□□□□□ -0.51
CPSF1-207ENST00000531727 SLC50A1Q9BRV3 221 aa11.85□□□□□ -0.51
CPSF1-207ENST00000531727 L7N2F9 121 aa11.84□□□□□ -0.51
CPSF1-207ENST00000531727 CCSO14618 274 aa11.84□□□□□ -0.51
CPSF1-207ENST00000531727 COX7A2P2O60397 106 aa11.84□□□□□ -0.51
CPSF1-207ENST00000531727 CDKN1BP46527 198 aa11.84□□□□□ -0.51
CPSF1-207ENST00000531727 VAMP2P63027 116 aa11.84□□□□□ -0.51
CPSF1-207ENST00000531727 FCN2Q15485 313 aa11.84□□□□□ -0.51
CPSF1-207ENST00000531727 BPIFA4PQ86YQ2 179 aa11.84□□□□□ -0.51
CPSF1-207ENST00000531727 CBY3A6NI87 242 aa11.83□□□□□ -0.52
CPSF1-207ENST00000531727 F5H768 121 aa11.83□□□□□ -0.52
CPSF1-207ENST00000531727 PLA2G10O15496 165 aa11.83□□□□□ -0.52
CPSF1-207ENST00000531727 SNRPCP09234 159 aaKnown RBP11.83□□□□□ -0.52
CPSF1-207ENST00000531727 ZNF846Q147U1 533 aa11.83□□□□□ -0.52
CPSF1-207ENST00000531727 SOHLH1Q5JUK2 328 aa11.83□□□□□ -0.52
CPSF1-207ENST00000531727 TMEM37Q8WXS4 190 aa11.83□□□□□ -0.52
CPSF1-207ENST00000531727 C16orf74Q96GX8 76 aa11.83□□□□□ -0.52
CPSF1-207ENST00000531727 ATG101Q9BSB4 218 aa11.83□□□□□ -0.52
CPSF1-207ENST00000531727 PCLOQ9Y6V0 5065 aa11.83□□□□□ -0.52
CPSF1-207ENST00000531727 LYRM1O43325 122 aa11.82□□□□□ -0.52
CPSF1-207ENST00000531727 ATP5G1P05496 136 aa11.82□□□□□ -0.52
CPSF1-207ENST00000531727 MED14OSP0DP75 135 aa11.82□□□□□ -0.52
CPSF1-207ENST00000531727 HTN1P15515 57 aa11.82□□□□□ -0.52
CPSF1-207ENST00000531727 ATP5G3P48201 142 aa11.82□□□□□ -0.52
CPSF1-207ENST00000531727 MORN5Q5VZ52 161 aa11.82□□□□□ -0.52
CPSF1-207ENST00000531727 C10orf113Q5VZT2 155 aa11.82□□□□□ -0.52
CPSF1-207ENST00000531727 LSM5Q9Y4Y9 91 aaKnown RBP11.82□□□□□ -0.52
CPSF1-207ENST00000531727 TIMM8BQ9Y5J9 83 aaPredicted RBP11.82□□□□□ -0.52
CPSF1-207ENST00000531727 SLC17A3O00476 420 aa11.81□□□□□ -0.52
CPSF1-207ENST00000531727 IGLC2P0DOY2 106 aa11.81□□□□□ -0.52
CPSF1-207ENST00000531727 CAMLGP49069 296 aa11.81□□□□□ -0.52
CPSF1-207ENST00000531727 BCAP31P51572 246 aa11.81□□□□□ -0.52
CPSF1-207ENST00000531727 RAB31Q13636 194 aa11.81□□□□□ -0.52
CPSF1-207ENST00000531727 OPCMLQ14982 345 aa11.81□□□□□ -0.52
CPSF1-207ENST00000531727 C1orf134Q5TEV5 83 aa11.81□□□□□ -0.52
CPSF1-207ENST00000531727 ZNF493Q6ZR52 646 aa11.81□□□□□ -0.52
CPSF1-207ENST00000531727 RNASE8Q8TDE3 154 aaKnown RBP11.81□□□□□ -0.52
CPSF1-207ENST00000531727 C20orf144Q9BQM9 153 aa11.81□□□□□ -0.52
CPSF1-207ENST00000531727 C11orf1Q9H5F2 150 aa11.81□□□□□ -0.52
CPSF1-207ENST00000531727 DNAJC4Q9NNZ3 241 aa11.81□□□□□ -0.52
CPSF1-207ENST00000531727 PXMP4Q9Y6I8 212 aa11.81□□□□□ -0.52
CPSF1-207ENST00000531727 FAM25EA8MYX2 175 aa11.8□□□□□ -0.52
CPSF1-207ENST00000531727 H3BTX0 84 aa11.8□□□□□ -0.52
CPSF1-207ENST00000531727 H7BYZ3 331 aa11.8□□□□□ -0.52
CPSF1-207ENST00000531727 TCRBP04435 133 aa11.8□□□□□ -0.52
CPSF1-207ENST00000531727 CAV2P51636 162 aa11.8□□□□□ -0.52
CPSF1-207ENST00000531727 NRARPQ7Z6K4 114 aa11.8□□□□□ -0.52
CPSF1-207ENST00000531727 OR10J6PQ8NGY7 276 aa11.8□□□□□ -0.52
CPSF1-207ENST00000531727 ZNF431Q8TF32 576 aaPredicted RBP11.8□□□□□ -0.52
CPSF1-207ENST00000531727 TMEM263Q8WUH6 116 aaKnown RBP11.8□□□□□ -0.52
CPSF1-207ENST00000531727 TRAV6A0A075B6T7 132 aa11.79□□□□□ -0.52
CPSF1-207ENST00000531727 C5orf51A6NDU8 294 aa11.79□□□□□ -0.52
CPSF1-207ENST00000531727 PRAC2D3DTV9 90 aa11.79□□□□□ -0.52
CPSF1-207ENST00000531727 H3BQ15 152 aa11.79□□□□□ -0.52
CPSF1-207ENST00000531727 CST7O76096 145 aa11.79□□□□□ -0.52
CPSF1-207ENST00000531727 NUDT3O95989 172 aa11.79□□□□□ -0.52
CPSF1-207ENST00000531727 KIR3DS1Q14943 382 aa11.79□□□□□ -0.52
CPSF1-207ENST00000531727 Q6ZRG5 221 aa11.79□□□□□ -0.52
CPSF1-207ENST00000531727 SAT2Q96F10 170 aaPredicted RBP11.79□□□□□ -0.52
CPSF1-207ENST00000531727 SEC22CQ9BRL7 303 aa11.79□□□□□ -0.52
CPSF1-207ENST00000531727 PARD6GQ9BYG4 376 aaPredicted RBP11.79□□□□□ -0.52
CPSF1-207ENST00000531727 NOP10Q9NPE3 64 aaKnown RBP11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms