RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 LOC389332A0A1B0GUA5 103 aa12.94□□□□□ -0.34
SDC4-201ENST00000372733 CSN1S1P47710 185 aa12.94□□□□□ -0.34
SDC4-201ENST00000372733 TCTAP57738 103 aa12.94□□□□□ -0.34
SDC4-201ENST00000372733 PLGLAQ15195 96 aa12.94□□□□□ -0.34
SDC4-201ENST00000372733 BPIFA4PQ86YQ2 179 aa12.94□□□□□ -0.34
SDC4-201ENST00000372733 H3BRN7 92 aa12.93□□□□□ -0.34
SDC4-201ENST00000372733 PSG3Q16557 428 aa12.93□□□□□ -0.34
SDC4-201ENST00000372733 GATD1Q8NB37 220 aa12.93□□□□□ -0.34
SDC4-201ENST00000372733 KAAG1Q9UBP8 84 aa12.93□□□□□ -0.34
SDC4-201ENST00000372733 S4R3C0 116 aa12.93□□□□□ -0.34
SDC4-201ENST00000372733 OCIAD2Q56VL3 154 aa12.93□□□□□ -0.34
SDC4-201ENST00000372733 PIP4P2Q8N4L2 257 aa12.93□□□□□ -0.34
SDC4-201ENST00000372733 SERTM2A0A1B0GWG4 89 aa12.92□□□□□ -0.34
SDC4-201ENST00000372733 TMEM213A2RRL7 107 aa12.92□□□□□ -0.34
SDC4-201ENST00000372733 D6R8Y8 96 aa12.92□□□□□ -0.34
SDC4-201ENST00000372733 K7EIM0 57 aa12.92□□□□□ -0.34
SDC4-201ENST00000372733 FXYD7P58549 80 aa12.92□□□□□ -0.34
SDC4-201ENST00000372733 RIF1Q5UIP0 2472 aaKnown RBP12.92□□□□□ -0.34
SDC4-201ENST00000372733 SPTBN2O15020 2390 aa12.92□□□□□ -0.34
SDC4-201ENST00000372733 BUB1B-PAK6H3BSN5 160 aa12.92□□□□□ -0.34
SDC4-201ENST00000372733 UQCRFS1P47985 274 aa12.92□□□□□ -0.34
SDC4-201ENST00000372733 BCL6BQ8N143 479 aaPredicted RBP12.92□□□□□ -0.34
SDC4-201ENST00000372733 C7orf71A4D174 169 aa12.92□□□□□ -0.34
SDC4-201ENST00000372733 K7EQM0 130 aa12.92□□□□□ -0.34
SDC4-201ENST00000372733 IL4P05112 153 aa12.92□□□□□ -0.34
SDC4-201ENST00000372733 IGFBPL1Q8WX77 278 aa12.92□□□□□ -0.34
SDC4-201ENST00000372733 SIGLEC8Q9NYZ4 499 aa12.92□□□□□ -0.34
SDC4-201ENST00000372733 TACC2O95359 2948 aa12.91□□□□□ -0.34
SDC4-201ENST00000372733 LYNX1G3V0Z9 82 aa12.91□□□□□ -0.34
SDC4-201ENST00000372733 PPBPP02775 128 aa12.91□□□□□ -0.34
SDC4-201ENST00000372733 LYNX1P0DP58 116 aa12.91□□□□□ -0.34
SDC4-201ENST00000372733 FGF6P10767 208 aa12.91□□□□□ -0.34
SDC4-201ENST00000372733 RPS20P60866 119 aaKnown RBP12.91□□□□□ -0.34
SDC4-201ENST00000372733 COTL1Q14019 142 aa12.91□□□□□ -0.34
SDC4-201ENST00000372733 AMN1Q8IY45 258 aa12.91□□□□□ -0.34
SDC4-201ENST00000372733 VPS25Q9BRG1 176 aa12.91□□□□□ -0.34
SDC4-201ENST00000372733 TPRP12270 2363 aaKnown RBP12.91□□□□□ -0.34
SDC4-201ENST00000372733 A0A1W2PRD5 423 aa12.91□□□□□ -0.34
SDC4-201ENST00000372733 A0A1W2PRF3 423 aa12.91□□□□□ -0.34
SDC4-201ENST00000372733 A0A1W2PRM7 423 aa12.91□□□□□ -0.34
SDC4-201ENST00000372733 CNIH1O95406 144 aa12.91□□□□□ -0.34
SDC4-201ENST00000372733 TNFRSF14Q92956 283 aa12.91□□□□□ -0.34
SDC4-201ENST00000372733 RPEQ96AT9 228 aa12.91□□□□□ -0.34
SDC4-201ENST00000372733 RNF125Q96EQ8 232 aa12.91□□□□□ -0.34
SDC4-201ENST00000372733 PEF1Q9UBV8 284 aaKnown RBP12.91□□□□□ -0.34
SDC4-201ENST00000372733 TMEM97Q5BJF2 176 aa12.9□□□□□ -0.34
SDC4-201ENST00000372733 LYZL1Q6UWQ5 148 aa12.9□□□□□ -0.34
SDC4-201ENST00000372733 ZNF491Q8N8L2 437 aa12.9□□□□□ -0.34
SDC4-201ENST00000372733 ZFHX2Q9C0A1 2572 aaPredicted RBP12.9□□□□□ -0.34
SDC4-201ENST00000372733 ZGRF1Q86YA3 2104 aa12.9□□□□□ -0.34
SDC4-201ENST00000372733 ATMQ13315 3056 aa12.9□□□□□ -0.34
SDC4-201ENST00000372733 A0A1B0GW15 77 aa12.9□□□□□ -0.35
SDC4-201ENST00000372733 MRPS12O15235 138 aaKnown RBP12.9□□□□□ -0.35
SDC4-201ENST00000372733 FCGR2BP31994 310 aaPredicted RBP12.9□□□□□ -0.35
SDC4-201ENST00000372733 NHLH1Q02575 133 aa12.9□□□□□ -0.35
SDC4-201ENST00000372733 KLF17Q5JT82 389 aaPredicted RBP12.9□□□□□ -0.35
SDC4-201ENST00000372733 ZNF414Q96IQ9 312 aa12.9□□□□□ -0.35
SDC4-201ENST00000372733 E7EQL1 145 aa12.89□□□□□ -0.35
SDC4-201ENST00000372733 CT45A10P0DMU9 189 aa12.89□□□□□ -0.35
SDC4-201ENST00000372733 PRELID3AQ96N28 172 aa12.89□□□□□ -0.35
SDC4-201ENST00000372733 RALYQ9UKM9 306 aaKnown RBP12.89□□□□□ -0.35
SDC4-201ENST00000372733 SELENOKQ9Y6D0 94 aa12.89□□□□□ -0.35
SDC4-201ENST00000372733 APOBEC3AP31941 199 aaPredicted RBP12.89□□□□□ -0.35
SDC4-201ENST00000372733 CACNG7P62955 275 aa12.89□□□□□ -0.35
SDC4-201ENST00000372733 Q6AWC8 147 aa12.89□□□□□ -0.35
SDC4-201ENST00000372733 GAGE12BA1L429 117 aa12.88□□□□□ -0.35
SDC4-201ENST00000372733 ZNF493Q6ZR52 646 aa12.88□□□□□ -0.35
SDC4-201ENST00000372733 RABAC1Q9UI14 185 aa12.88□□□□□ -0.35
SDC4-201ENST00000372733 SHISA9B4DS77 424 aa12.88□□□□□ -0.35
SDC4-201ENST00000372733 SH2D1AO60880 128 aa12.88□□□□□ -0.35
SDC4-201ENST00000372733 LYPD1Q8N2G4 141 aa12.88□□□□□ -0.35
SDC4-201ENST00000372733 SMKR1H3BMG3 65 aa12.87□□□□□ -0.35
SDC4-201ENST00000372733 PRRG2O14669 202 aa12.87□□□□□ -0.35
SDC4-201ENST00000372733 TIMM23O14925 209 aa12.87□□□□□ -0.35
SDC4-201ENST00000372733 SEC11AP67812 179 aa12.87□□□□□ -0.35
SDC4-201ENST00000372733 FAM104BQ5XKR9 115 aa12.87□□□□□ -0.35
SDC4-201ENST00000372733 NAA38Q9BRA0 125 aaKnown RBP12.87□□□□□ -0.35
SDC4-201ENST00000372733 HILPDAQ9Y5L2 63 aa12.87□□□□□ -0.35
SDC4-201ENST00000372733 BSNQ9UPA5 3926 aa12.87□□□□□ -0.35
SDC4-201ENST00000372733 GVINP1Q7Z2Y8 2422 aa12.87□□□□□ -0.35
SDC4-201ENST00000372733 AKAP13Q12802 2813 aa12.87□□□□□ -0.35
SDC4-201ENST00000372733 IGKV2-40A0A087WW87 121 aaPredicted RBP12.87□□□□□ -0.35
SDC4-201ENST00000372733 TMEM189A5PLL7 270 aa12.87□□□□□ -0.35
SDC4-201ENST00000372733 IGKV2D-40P01614 121 aaPredicted RBP12.87□□□□□ -0.35
SDC4-201ENST00000372733 JMJD8Q96S16 334 aa12.87□□□□□ -0.35
SDC4-201ENST00000372733 ANKRD11Q6UB99 2663 aaPredicted RBP12.86□□□□□ -0.35
SDC4-201ENST00000372733 MRPL51Q4U2R6 128 aaKnown RBP12.86□□□□□ -0.35
SDC4-201ENST00000372733 ORMDL3Q8N138 153 aa12.86□□□□□ -0.35
SDC4-201ENST00000372733 U3KQK5 164 aa12.86□□□□□ -0.35
SDC4-201ENST00000372733 APC2O95996 2303 aa12.86□□□□□ -0.35
SDC4-201ENST00000372733 VSTM5A8MXK1 200 aa12.86□□□□□ -0.35
SDC4-201ENST00000372733 THYN1Q9P016 225 aa12.86□□□□□ -0.35
SDC4-201ENST00000372733 LGALS9BQ3B8N2 356 aa12.85□□□□□ -0.35
SDC4-201ENST00000372733 LGALS9CQ6DKI2 356 aa12.85□□□□□ -0.35
SDC4-201ENST00000372733 WFDC3Q8IUB2 231 aa12.85□□□□□ -0.35
SDC4-201ENST00000372733 PPIAL4CA0A0B4J2A2 164 aa12.85□□□□□ -0.35
SDC4-201ENST00000372733 PPIAL4GP0DN37 164 aa12.85□□□□□ -0.35
SDC4-201ENST00000372733 AAMDCQ9H7C9 122 aa12.85□□□□□ -0.35
SDC4-201ENST00000372733 WI2-2373I1.2A0A1W2PRP0 233 aa12.84□□□□□ -0.35
SDC4-201ENST00000372733 IGF2-ASQ6U949 168 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms