RNA–Protein interactions for RNA: ENST00000269318.9

CCDC40-201, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2 BASIC

Gene CCDC40, Length 1,970 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-201ENST00000269318 TMEM75Q8N9X5 138 aa12.85□□□□□ -0.35
CCDC40-201ENST00000269318 SERTAD4Q9NUC0 356 aa12.85□□□□□ -0.35
CCDC40-201ENST00000269318 TRAPPC1Q9Y5R8 145 aa12.85□□□□□ -0.35
CCDC40-201ENST00000269318 DIRC3C9JPN6 131 aa12.84□□□□□ -0.35
CCDC40-201ENST00000269318 M0R3E3 92 aa12.84□□□□□ -0.35
CCDC40-201ENST00000269318 BUB3O43684 328 aa12.84□□□□□ -0.35
CCDC40-201ENST00000269318 GATCO43716 136 aaKnown RBP12.84□□□□□ -0.35
CCDC40-201ENST00000269318 TPPP2P59282 170 aa12.84□□□□□ -0.35
CCDC40-201ENST00000269318 RELQ04864 619 aaPredicted RBP12.84□□□□□ -0.35
CCDC40-201ENST00000269318 GFI1BQ5VTD9 330 aa12.84□□□□□ -0.35
CCDC40-201ENST00000269318 LINC00322Q6ZN03 302 aaPredicted RBP12.84□□□□□ -0.35
CCDC40-201ENST00000269318 C9orf139Q6ZV77 190 aa12.84□□□□□ -0.35
CCDC40-201ENST00000269318 TMEM183AQ8IXX5 376 aa12.84□□□□□ -0.35
CCDC40-201ENST00000269318 Q96MF0 132 aa12.84□□□□□ -0.35
CCDC40-201ENST00000269318 ZNF580Q9UK33 172 aa12.84□□□□□ -0.35
CCDC40-201ENST00000269318 APCP25054 2843 aa12.84□□□□□ -0.35
CCDC40-201ENST00000269318 ZANQ9Y493 2812 aa12.83□□□□□ -0.35
CCDC40-201ENST00000269318 S100A8P05109 93 aa12.83□□□□□ -0.35
CCDC40-201ENST00000269318 FRMD6-AS1P0C7T7 363 aa12.83□□□□□ -0.35
CCDC40-201ENST00000269318 PSG9Q00887 426 aa12.83□□□□□ -0.35
CCDC40-201ENST00000269318 CFHR3Q02985 330 aa12.83□□□□□ -0.35
CCDC40-201ENST00000269318 GRAMD2BQ96HH9 432 aa12.83□□□□□ -0.35
CCDC40-201ENST00000269318 ZNF492Q9P255 531 aa12.83□□□□□ -0.35
CCDC40-201ENST00000269318 BAHCC1Q9P281 2608 aa12.83□□□□□ -0.36
CCDC40-201ENST00000269318 C19orf71A6NCJ1 209 aa12.83□□□□□ -0.36
CCDC40-201ENST00000269318 ZNF253O75346 499 aa12.83□□□□□ -0.36
CCDC40-201ENST00000269318 IGLV1-40P01703 118 aa12.83□□□□□ -0.36
CCDC40-201ENST00000269318 RAB9AP51151 201 aa12.83□□□□□ -0.36
CCDC40-201ENST00000269318 TCL1AP56279 114 aa12.83□□□□□ -0.36
CCDC40-201ENST00000269318 COA6Q5JTJ3 125 aaKnown RBP12.83□□□□□ -0.36
CCDC40-201ENST00000269318 HIST3H2BBQ8N257 126 aa12.83□□□□□ -0.36
CCDC40-201ENST00000269318 USMG5Q96IX5 58 aa12.83□□□□□ -0.36
CCDC40-201ENST00000269318 PRSS22Q9GZN4 317 aa12.83□□□□□ -0.36
CCDC40-201ENST00000269318 AAMDCQ9H7C9 122 aa12.83□□□□□ -0.36
CCDC40-201ENST00000269318 CBLN1P23435 193 aa12.82□□□□□ -0.36
CCDC40-201ENST00000269318 Q71RC1 249 aaPredicted RBP12.82□□□□□ -0.36
CCDC40-201ENST00000269318 PRNTQ86SH4 94 aa12.82□□□□□ -0.36
CCDC40-201ENST00000269318 PSMG3-AS1Q96PY0 264 aa12.82□□□□□ -0.36
CCDC40-201ENST00000269318 CSPG4Q6UVK1 2322 aa12.82□□□□□ -0.36
CCDC40-201ENST00000269318 NBPF19A0A087WUL8 3843 aa12.82□□□□□ -0.36
CCDC40-201ENST00000269318 J3QKU1 62 aa12.81□□□□□ -0.36
CCDC40-201ENST00000269318 MEOX2P50222 304 aa12.81□□□□□ -0.36
CCDC40-201ENST00000269318 PSG3Q16557 428 aa12.81□□□□□ -0.36
CCDC40-201ENST00000269318 ARL6IP6Q8N6S5 226 aa12.81□□□□□ -0.36
CCDC40-201ENST00000269318 KLK15Q9H2R5 256 aa12.81□□□□□ -0.36
CCDC40-201ENST00000269318 U3KQE9 123 aa12.81□□□□□ -0.36
CCDC40-201ENST00000269318 A0A087X0K7 114 aa12.81□□□□□ -0.36
CCDC40-201ENST00000269318 IZUMO1RA6ND01 250 aa12.81□□□□□ -0.36
CCDC40-201ENST00000269318 ZNF785A8K8V0 405 aa12.81□□□□□ -0.36
CCDC40-201ENST00000269318 K7EQM0 130 aa12.81□□□□□ -0.36
CCDC40-201ENST00000269318 C1orf194Q5T5A4 169 aa12.81□□□□□ -0.36
CCDC40-201ENST00000269318 CIARTQ8N365 385 aaPredicted RBP12.81□□□□□ -0.36
CCDC40-201ENST00000269318 OR5R1Q8NH85 324 aa12.81□□□□□ -0.36
CCDC40-201ENST00000269318 PSG8Q9UQ74 426 aa12.81□□□□□ -0.36
CCDC40-201ENST00000269318 PRRC2AP48634 2157 aaKnown RBP12.81□□□□□ -0.36
CCDC40-201ENST00000269318 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.8□□□□□ -0.36
CCDC40-201ENST00000269318 XKRY2A2RUG3 117 aa12.8□□□□□ -0.36
CCDC40-201ENST00000269318 TRBV12-3P01733 135 aa12.8□□□□□ -0.36
CCDC40-201ENST00000269318 IGHG4P01861 327 aa12.8□□□□□ -0.36
CCDC40-201ENST00000269318 APOHP02749 345 aaPredicted RBP12.8□□□□□ -0.36
CCDC40-201ENST00000269318 ARL3P36405 182 aa12.8□□□□□ -0.36
CCDC40-201ENST00000269318 HIST2H2BCQ6DN03 193 aa12.8□□□□□ -0.36
CCDC40-201ENST00000269318 TSKUQ8WUA8 353 aa12.8□□□□□ -0.36
CCDC40-201ENST00000269318 METTL26Q96S19 204 aa12.8□□□□□ -0.36
CCDC40-201ENST00000269318 GNB1LQ9BYB4 327 aa12.8□□□□□ -0.36
CCDC40-201ENST00000269318 GPR61Q9BZJ8 451 aa12.8□□□□□ -0.36
CCDC40-201ENST00000269318 ZNF331Q9NQX6 463 aaPredicted RBP12.8□□□□□ -0.36
CCDC40-201ENST00000269318 ZFP30Q9Y2G7 519 aa12.8□□□□□ -0.36
CCDC40-201ENST00000269318 NPIPB6E9PJ23 425 aa12.8□□□□□ -0.36
CCDC40-201ENST00000269318 SPINK4O60575 86 aa12.8□□□□□ -0.36
CCDC40-201ENST00000269318 PRB4P10163 310 aaPredicted RBP12.8□□□□□ -0.36
CCDC40-201ENST00000269318 SLC35B1P78383 322 aa12.8□□□□□ -0.36
CCDC40-201ENST00000269318 CT83Q5H943 113 aa12.8□□□□□ -0.36
CCDC40-201ENST00000269318 C12orf57Q99622 126 aa12.8□□□□□ -0.36
CCDC40-201ENST00000269318 RPP21Q9H633 154 aaKnown RBP12.8□□□□□ -0.36
CCDC40-201ENST00000269318 SERTM2A0A1B0GWG4 89 aa12.79□□□□□ -0.36
CCDC40-201ENST00000269318 PF4V1P10720 104 aa12.79□□□□□ -0.36
CCDC40-201ENST00000269318 RPL19P84098 196 aaKnown RBP12.79□□□□□ -0.36
CCDC40-201ENST00000269318 Q6YL49 198 aa12.79□□□□□ -0.36
CCDC40-201ENST00000269318 MRPL18Q9H0U6 180 aaKnown RBP12.79□□□□□ -0.36
CCDC40-201ENST00000269318 IGHV3-66A0A0C4DH42 116 aa12.78□□□□□ -0.36
CCDC40-201ENST00000269318 SNURFLB1AK76 121 aa12.78□□□□□ -0.36
CCDC40-201ENST00000269318 SMIM6P0DI80 62 aa12.78□□□□□ -0.36
CCDC40-201ENST00000269318 CSN1S1P47710 185 aa12.78□□□□□ -0.36
CCDC40-201ENST00000269318 TMEM95Q3KNT9 176 aa12.78□□□□□ -0.36
CCDC40-201ENST00000269318 PDZD11Q5EBL8 140 aa12.78□□□□□ -0.36
CCDC40-201ENST00000269318 CYB5R2Q6BCY4 276 aa12.78□□□□□ -0.36
CCDC40-201ENST00000269318 TMEM136Q6ZRR5 245 aa12.78□□□□□ -0.36
CCDC40-201ENST00000269318 NUP35Q8NFH5 326 aa12.78□□□□□ -0.36
CCDC40-201ENST00000269318 ZC2HC1AQ96GY0 325 aa12.78□□□□□ -0.36
CCDC40-201ENST00000269318 NEU1Q99519 415 aa12.78□□□□□ -0.36
CCDC40-201ENST00000269318 VPREB3Q9UKI3 123 aa12.78□□□□□ -0.36
CCDC40-201ENST00000269318 ZNF207O43670 478 aaKnown RBP12.78□□□□□ -0.36
CCDC40-201ENST00000269318 P01737 135 aa12.78□□□□□ -0.36
CCDC40-201ENST00000269318 COX19Q49B96 90 aa12.78□□□□□ -0.36
CCDC40-201ENST00000269318 WDR73Q6P4I2 378 aa12.78□□□□□ -0.36
CCDC40-201ENST00000269318 C16orf54Q6UWD8 224 aa12.78□□□□□ -0.36
CCDC40-201ENST00000269318 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.78□□□□□ -0.36
CCDC40-201ENST00000269318 NAT8BQ9UHF3 227 aa12.78□□□□□ -0.36
CCDC40-201ENST00000269318 CHEK1O14757 476 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms