RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-223ENST00000627587 FAM90A2PQ658T7 463 aa7.34□□□□□ -1.23
PDLIM5-223ENST00000627587 C10orf99Q6UWK7 81 aa7.34□□□□□ -1.23
PDLIM5-223ENST00000627587 CLEC19AQ6UXS0 136 aa7.34□□□□□ -1.23
PDLIM5-223ENST00000627587 ZNF600Q6ZNG1 722 aa7.34□□□□□ -1.23
PDLIM5-223ENST00000627587 OR4F4Q96R69 305 aa7.34□□□□□ -1.23
PDLIM5-223ENST00000627587 PAXXQ9BUH6 204 aa7.34□□□□□ -1.23
PDLIM5-223ENST00000627587 SLC25A39Q9BZJ4 359 aaPredicted RBP7.34□□□□□ -1.23
PDLIM5-223ENST00000627587 OR51M1Q9H341 326 aa7.34□□□□□ -1.23
PDLIM5-223ENST00000627587 ZNF702PQ9H963 129 aa7.34□□□□□ -1.23
PDLIM5-223ENST00000627587 MRPL27Q9P0M9 148 aaKnown RBP7.34□□□□□ -1.23
PDLIM5-223ENST00000627587 ARL2-SNX15V9GYD0 113 aa7.34□□□□□ -1.23
PDLIM5-223ENST00000627587 A0A0G2JLM5 398 aa7.33□□□□□ -1.24
PDLIM5-223ENST00000627587 TMEM250H0YL14 139 aa7.33□□□□□ -1.24
PDLIM5-223ENST00000627587 TGOLN2O43493 480 aa7.33□□□□□ -1.24
PDLIM5-223ENST00000627587 PDE6DO43924 150 aa7.33□□□□□ -1.24
PDLIM5-223ENST00000627587 SNAPINO95295 136 aa7.33□□□□□ -1.24
PDLIM5-223ENST00000627587 USF2Q15853 346 aaPredicted RBP7.33□□□□□ -1.24
PDLIM5-223ENST00000627587 LCNL1Q6ZST4 164 aa7.33□□□□□ -1.24
PDLIM5-223ENST00000627587 GNB4Q9HAV0 340 aa7.33□□□□□ -1.24
PDLIM5-223ENST00000627587 YTHDF2Q9Y5A9 579 aaKnown RBP7.33□□□□□ -1.24
PDLIM5-223ENST00000627587 PUS1Q9Y606 427 aaKnown RBP eCLIP7.33□□□□□ -1.24
PDLIM5-223ENST00000627587 FAM74A7A6NL05 159 aa7.32□□□□□ -1.24
PDLIM5-223ENST00000627587 IGHG4P01861 327 aa7.32□□□□□ -1.24
PDLIM5-223ENST00000627587 PYYP10082 97 aa7.32□□□□□ -1.24
PDLIM5-223ENST00000627587 NPPCP23582 126 aa7.32□□□□□ -1.24
PDLIM5-223ENST00000627587 ATP5G3P48201 142 aa7.32□□□□□ -1.24
PDLIM5-223ENST00000627587 RAB9AP51151 201 aa7.32□□□□□ -1.24
PDLIM5-223ENST00000627587 SLC35B1P78383 322 aa7.32□□□□□ -1.24
PDLIM5-223ENST00000627587 RELQ04864 619 aaPredicted RBP7.32□□□□□ -1.24
PDLIM5-223ENST00000627587 KIAA0141Q14154 515 aaPredicted RBP7.32□□□□□ -1.24
PDLIM5-223ENST00000627587 LEMD1Q68G75 181 aa7.32□□□□□ -1.24
PDLIM5-223ENST00000627587 ZNF329Q86UD4 541 aa7.32□□□□□ -1.24
PDLIM5-223ENST00000627587 LINC00469Q8N7U9 141 aa7.32□□□□□ -1.24
PDLIM5-223ENST00000627587 LINC01006Q8NI28 216 aa7.32□□□□□ -1.24
PDLIM5-223ENST00000627587 C16orf95Q9H693 158 aa7.32□□□□□ -1.24
PDLIM5-223ENST00000627587 F6UZH7 168 aa7.32□□□□□ -1.24
PDLIM5-223ENST00000627587 H3BRN7 92 aa7.32□□□□□ -1.24
PDLIM5-223ENST00000627587 J3QL48 77 aa7.32□□□□□ -1.24
PDLIM5-223ENST00000627587 BMPR1BO00238 502 aa7.32□□□□□ -1.24
PDLIM5-223ENST00000627587 PSMB8P28062 276 aa7.32□□□□□ -1.24
PDLIM5-223ENST00000627587 S100A7P31151 101 aa7.32□□□□□ -1.24
PDLIM5-223ENST00000627587 PROK1P58294 105 aa7.32□□□□□ -1.24
PDLIM5-223ENST00000627587 ZNF343Q6P1L6 599 aa7.32□□□□□ -1.24
PDLIM5-223ENST00000627587 Q8N2B8 174 aa7.32□□□□□ -1.24
PDLIM5-223ENST00000627587 NIPSNAP3BQ9BS92 247 aa7.32□□□□□ -1.24
PDLIM5-223ENST00000627587 SHANK2-AS3Q9BTD1 123 aa7.32□□□□□ -1.24
PDLIM5-223ENST00000627587 NKX6-2Q9C056 277 aaPredicted RBP7.32□□□□□ -1.24
PDLIM5-223ENST00000627587 RNF24Q9Y225 148 aa7.32□□□□□ -1.24
PDLIM5-223ENST00000627587 IGHV3-35A0A0C4DH35 117 aa7.31□□□□□ -1.24
PDLIM5-223ENST00000627587 A0A1W2PRE2 83 aa7.31□□□□□ -1.24
PDLIM5-223ENST00000627587 TRBV12-3P01733 135 aa7.31□□□□□ -1.24
PDLIM5-223ENST00000627587 GP9P14770 177 aa7.31□□□□□ -1.24
PDLIM5-223ENST00000627587 TEX38Q6PEX7 206 aa7.31□□□□□ -1.24
PDLIM5-223ENST00000627587 FXYD5Q96DB9 178 aa7.31□□□□□ -1.24
PDLIM5-223ENST00000627587 ZFAND3Q9H8U3 227 aa7.31□□□□□ -1.24
PDLIM5-223ENST00000627587 RABAC1Q9UI14 185 aa7.31□□□□□ -1.24
PDLIM5-223ENST00000627587 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP7.3□□□□□ -1.24
PDLIM5-223ENST00000627587 ZNF98A6NK75 572 aa7.3□□□□□ -1.24
PDLIM5-223ENST00000627587 ZNF727A8MUV8 499 aa7.3□□□□□ -1.24
PDLIM5-223ENST00000627587 PPP5D1E7EU14 171 aa7.3□□□□□ -1.24
PDLIM5-223ENST00000627587 IGHV3-11P01762 117 aa7.3□□□□□ -1.24
PDLIM5-223ENST00000627587 ARL3P36405 182 aa7.3□□□□□ -1.24
PDLIM5-223ENST00000627587 FAM74A3Q4VXF1 159 aa7.3□□□□□ -1.24
PDLIM5-223ENST00000627587 FAM209BQ5JX69 171 aa7.3□□□□□ -1.24
PDLIM5-223ENST00000627587 TOMM20LQ6UXN7 152 aa7.3□□□□□ -1.24
PDLIM5-223ENST00000627587 BPIFA4PQ86YQ2 179 aa7.3□□□□□ -1.24
PDLIM5-223ENST00000627587 CLRN3Q8NCR9 226 aa7.3□□□□□ -1.24
PDLIM5-223ENST00000627587 RPUSD4Q96CM3 377 aaKnown RBP7.3□□□□□ -1.24
PDLIM5-223ENST00000627587 TMEM14CQ9P0S9 112 aa7.3□□□□□ -1.24
PDLIM5-223ENST00000627587 GGTLC3B5MD39 225 aa7.3□□□□□ -1.24
PDLIM5-223ENST00000627587 H3BQ15 152 aa7.3□□□□□ -1.24
PDLIM5-223ENST00000627587 M0R036 132 aa7.3□□□□□ -1.24
PDLIM5-223ENST00000627587 MRPS12O15235 138 aaKnown RBP7.3□□□□□ -1.24
PDLIM5-223ENST00000627587 ELANEP08246 267 aa7.3□□□□□ -1.24
PDLIM5-223ENST00000627587 SNRPCP09234 159 aaKnown RBP7.3□□□□□ -1.24
PDLIM5-223ENST00000627587 NBEAP1P0C6P0 100 aa7.3□□□□□ -1.24
PDLIM5-223ENST00000627587 KRTAP10-3P60369 221 aa7.3□□□□□ -1.24
PDLIM5-223ENST00000627587 FOXE3Q13461 319 aa7.3□□□□□ -1.24
PDLIM5-223ENST00000627587 ZNF674Q2M3X9 581 aa7.3□□□□□ -1.24
PDLIM5-223ENST00000627587 OR4F17Q8NGA8 305 aa7.3□□□□□ -1.24
PDLIM5-223ENST00000627587 OR4X2Q8NGF9 303 aa7.3□□□□□ -1.24
PDLIM5-223ENST00000627587 BLNKQ8WV28 456 aa7.3□□□□□ -1.24
PDLIM5-223ENST00000627587 SMIM7Q9BQ49 75 aa7.3□□□□□ -1.24
PDLIM5-223ENST00000627587 PARLQ9H300 379 aa7.3□□□□□ -1.24
PDLIM5-223ENST00000627587 SERTAD4Q9NUC0 356 aa7.3□□□□□ -1.24
PDLIM5-223ENST00000627587 IGHV3OR16-8A0A075B7F1 116 aa7.29□□□□□ -1.24
PDLIM5-223ENST00000627587 SCO2A0A1W2PP80 73 aa7.29□□□□□ -1.24
PDLIM5-223ENST00000627587 HIST1H1EP10412 219 aaKnown RBP7.29□□□□□ -1.24
PDLIM5-223ENST00000627587 SUMO1P63165 101 aaKnown RBP7.29□□□□□ -1.24
PDLIM5-223ENST00000627587 Q6ZSV7 163 aa7.29□□□□□ -1.24
PDLIM5-223ENST00000627587 TVP23CQ96ET8 276 aa7.29□□□□□ -1.24
PDLIM5-223ENST00000627587 DERL1Q9BUN8 251 aa7.29□□□□□ -1.24
PDLIM5-223ENST00000627587 NOTCH1P46531 2555 aa7.29□□□□□ -1.24
PDLIM5-223ENST00000627587 NDUFB4O95168 129 aa7.28□□□□□ -1.24
PDLIM5-223ENST00000627587 RPL7P18124 248 aaKnown RBP7.28□□□□□ -1.24
PDLIM5-223ENST00000627587 MYCNOSP40205 109 aa7.28□□□□□ -1.24
PDLIM5-223ENST00000627587 PNRC1Q12796 327 aaPredicted RBP7.28□□□□□ -1.24
PDLIM5-223ENST00000627587 REC114Q7Z4M0 266 aa7.28□□□□□ -1.24
PDLIM5-223ENST00000627587 MYOZ3Q8TDC0 251 aa7.28□□□□□ -1.24
PDLIM5-223ENST00000627587 C11orf52Q96A22 123 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms