RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 C21orf62-AS1Q17RA5 79 aa4.99□□□□□ -1.61
VPS53-213ENST00000572334 ZNF818PQ6ZRF7 136 aa4.99□□□□□ -1.61
VPS53-213ENST00000572334 HOGA1Q86XE5 327 aa4.99□□□□□ -1.61
VPS53-213ENST00000572334 WFDC3Q8IUB2 231 aa4.99□□□□□ -1.61
VPS53-213ENST00000572334 OR10W1Q8NGF6 305 aa4.99□□□□□ -1.61
VPS53-213ENST00000572334 OR1P1Q8NH06 330 aa4.99□□□□□ -1.61
VPS53-213ENST00000572334 IL17DQ8TAD2 202 aa4.99□□□□□ -1.61
VPS53-213ENST00000572334 VSTM2AQ8TAG5 236 aa4.99□□□□□ -1.61
VPS53-213ENST00000572334 LINC00476Q8WZB0 136 aa4.99□□□□□ -1.61
VPS53-213ENST00000572334 EEF1AKMT3Q96AZ1 226 aa4.99□□□□□ -1.61
VPS53-213ENST00000572334 SEC22AQ96IW7 307 aa4.99□□□□□ -1.61
VPS53-213ENST00000572334 HIST1H2BLQ99880 126 aa4.99□□□□□ -1.61
VPS53-213ENST00000572334 GINS3Q9BRX5 216 aa4.99□□□□□ -1.61
VPS53-213ENST00000572334 ARV1Q9H2C2 271 aa4.99□□□□□ -1.61
VPS53-213ENST00000572334 PUS1Q9Y606 427 aaKnown RBP eCLIP4.99□□□□□ -1.61
VPS53-213ENST00000572334 LOC102724200A0A096LPH7 203 aaPredicted RBP4.98□□□□□ -1.61
VPS53-213ENST00000572334 TRBV7-1A0A0A6YYK4 115 aa4.98□□□□□ -1.61
VPS53-213ENST00000572334 IGHV3-35A0A0C4DH35 117 aa4.98□□□□□ -1.61
VPS53-213ENST00000572334 ZNF320A2RRD8 509 aa4.98□□□□□ -1.61
VPS53-213ENST00000572334 H3BQ15 152 aa4.98□□□□□ -1.61
VPS53-213ENST00000572334 K7EP13 123 aa4.98□□□□□ -1.61
VPS53-213ENST00000572334 HRASP01112 189 aa4.98□□□□□ -1.61
VPS53-213ENST00000572334 PPBPP02775 128 aa4.98□□□□□ -1.61
VPS53-213ENST00000572334 TRGC1P0CF51 173 aa4.98□□□□□ -1.61
VPS53-213ENST00000572334 AKR1C4P17516 323 aa4.98□□□□□ -1.61
VPS53-213ENST00000572334 GNRHRP30968 328 aa4.98□□□□□ -1.61
VPS53-213ENST00000572334 GPR183P32249 361 aa4.98□□□□□ -1.61
VPS53-213ENST00000572334 BMI1P35226 326 aa4.98□□□□□ -1.61
VPS53-213ENST00000572334 ADMP35318 185 aa4.98□□□□□ -1.61
VPS53-213ENST00000572334 RPP30P78346 268 aaKnown RBP4.98□□□□□ -1.61
VPS53-213ENST00000572334 SRPXP78539 464 aa4.98□□□□□ -1.61
VPS53-213ENST00000572334 SRSF3P84103 164 aaKnown RBP4.98□□□□□ -1.61
VPS53-213ENST00000572334 WT1-ASQ06250 92 aa4.98□□□□□ -1.61
VPS53-213ENST00000572334 ODF3L2Q3SX64 289 aa4.98□□□□□ -1.61
VPS53-213ENST00000572334 FAM106AQ4KMX7 169 aa4.98□□□□□ -1.61
VPS53-213ENST00000572334 FAAP20Q6NZ36 180 aa4.98□□□□□ -1.61
VPS53-213ENST00000572334 OR4A5Q8NH83 315 aa4.98□□□□□ -1.61
VPS53-213ENST00000572334 TMEM190Q8WZ59 177 aa4.98□□□□□ -1.61
VPS53-213ENST00000572334 ISOC2Q96AB3 205 aa4.98□□□□□ -1.61
VPS53-213ENST00000572334 YPEL4Q96NS1 127 aa4.98□□□□□ -1.61
VPS53-213ENST00000572334 C20orf144Q9BQM9 153 aa4.98□□□□□ -1.61
VPS53-213ENST00000572334 MIEN1Q9BRT3 115 aa4.98□□□□□ -1.61
VPS53-213ENST00000572334 CHRDL1Q9BU40 450 aa4.98□□□□□ -1.61
VPS53-213ENST00000572334 GGTLC1Q9BX51 225 aa4.98□□□□□ -1.61
VPS53-213ENST00000572334 KRTAP17-1Q9BYP8 105 aa4.98□□□□□ -1.61
VPS53-213ENST00000572334 PRO1933Q9H354 126 aa4.98□□□□□ -1.61
VPS53-213ENST00000572334 ANAPC10Q9UM13 185 aa4.98□□□□□ -1.61
VPS53-213ENST00000572334 TRAV25A0A0B4J276 109 aa4.97□□□□□ -1.61
VPS53-213ENST00000572334 KIR2DL5BA0A0G2JN68 375 aa4.97□□□□□ -1.61
VPS53-213ENST00000572334 KIR2DL5BA0A0G2JPC4 375 aa4.97□□□□□ -1.61
VPS53-213ENST00000572334 A0A0J9YWU9 116 aa4.97□□□□□ -1.61
VPS53-213ENST00000572334 TEX50A0A1B0GTY4 177 aa4.97□□□□□ -1.61
VPS53-213ENST00000572334 CBY3A6NI87 242 aa4.97□□□□□ -1.61
VPS53-213ENST00000572334 K7EIM0 57 aa4.97□□□□□ -1.61
VPS53-213ENST00000572334 K7ERU9 68 aa4.97□□□□□ -1.61
VPS53-213ENST00000572334 AGPAT2O15120 278 aa4.97□□□□□ -1.61
VPS53-213ENST00000572334 SCGB1D1O95968 90 aa4.97□□□□□ -1.61
VPS53-213ENST00000572334 HPRT1P00492 218 aa4.97□□□□□ -1.61
VPS53-213ENST00000572334 TRGC2P03986 189 aa4.97□□□□□ -1.61
VPS53-213ENST00000572334 PTTG1IPP53801 180 aa4.97□□□□□ -1.61
VPS53-213ENST00000572334 ELLP55199 621 aaPredicted RBP4.97□□□□□ -1.61
VPS53-213ENST00000572334 S100A10P60903 97 aa4.97□□□□□ -1.61
VPS53-213ENST00000572334 ZNF585BQ52M93 769 aa4.97□□□□□ -1.61
VPS53-213ENST00000572334 ZNF506Q5JVG8 444 aa4.97□□□□□ -1.61
VPS53-213ENST00000572334 ZNF705AQ6ZN79 300 aaPredicted RBP4.97□□□□□ -1.61
VPS53-213ENST00000572334 KIR2DL5AQ8N109 375 aa4.97□□□□□ -1.61
VPS53-213ENST00000572334 ZNF664Q8N3J9 261 aa4.97□□□□□ -1.61
VPS53-213ENST00000572334 ZBTB34Q8NCN2 500 aa4.97□□□□□ -1.61
VPS53-213ENST00000572334 ANAPC16Q96DE5 110 aa4.97□□□□□ -1.61
VPS53-213ENST00000572334 SRSF8Q9BRL6 282 aaKnown RBP4.97□□□□□ -1.61
VPS53-213ENST00000572334 RNF126Q9BV68 326 aa4.97□□□□□ -1.61
VPS53-213ENST00000572334 C5orf66Q9H5L9 145 aa4.97□□□□□ -1.61
VPS53-213ENST00000572334 NDUFA4L2Q9NRX3 87 aa4.97□□□□□ -1.61
VPS53-213ENST00000572334 TMEM140Q9NV12 185 aa4.97□□□□□ -1.61
VPS53-213ENST00000572334 FKBP11Q9NYL4 201 aa4.97□□□□□ -1.61
VPS53-213ENST00000572334 MRPL27Q9P0M9 148 aaKnown RBP4.97□□□□□ -1.61
VPS53-213ENST00000572334 HSPB7Q9UBY9 170 aa4.97□□□□□ -1.61
VPS53-213ENST00000572334 IGHV3OR16-8A0A075B7F1 116 aa4.96□□□□□ -1.62
VPS53-213ENST00000572334 IGHV3-21A0A0B4J1V1 117 aa4.96□□□□□ -1.62
VPS53-213ENST00000572334 XKRY2A2RUG3 117 aa4.96□□□□□ -1.62
VPS53-213ENST00000572334 MEIS3P1A6NDR6 274 aa4.96□□□□□ -1.62
VPS53-213ENST00000572334 OR2T8A6NH00 312 aa4.96□□□□□ -1.62
VPS53-213ENST00000572334 DEDDO75618 318 aa4.96□□□□□ -1.62
VPS53-213ENST00000572334 SERPINE2P07093 398 aa4.96□□□□□ -1.62
VPS53-213ENST00000572334 DEFA4P12838 97 aa4.96□□□□□ -1.62
VPS53-213ENST00000572334 FHITP49789 147 aa4.96□□□□□ -1.62
VPS53-213ENST00000572334 FXYD4P59646 89 aa4.96□□□□□ -1.62
VPS53-213ENST00000572334 UBE2G2P60604 165 aa4.96□□□□□ -1.62
VPS53-213ENST00000572334 SELENOTP62341 195 aa4.96□□□□□ -1.62
VPS53-213ENST00000572334 RAB11AP62491 216 aa4.96□□□□□ -1.62
VPS53-213ENST00000572334 BAXQ07812 192 aa4.96□□□□□ -1.62
VPS53-213ENST00000572334 DEFB135Q30KP9 77 aa4.96□□□□□ -1.62
VPS53-213ENST00000572334 TMEM41BQ5BJD5 291 aa4.96□□□□□ -1.62
VPS53-213ENST00000572334 RPL7L1Q6DKI1 246 aaKnown RBP4.96□□□□□ -1.62
VPS53-213ENST00000572334 TOMM20LQ6UXN7 152 aa4.96□□□□□ -1.62
VPS53-213ENST00000572334 Q6ZWC4 215 aa4.96□□□□□ -1.62
VPS53-213ENST00000572334 MTURNQ8N3F0 131 aa4.96□□□□□ -1.62
VPS53-213ENST00000572334 OR2C3Q8N628 320 aa4.96□□□□□ -1.62
VPS53-213ENST00000572334 ZNF738Q8NE65 137 aa4.96□□□□□ -1.62
VPS53-213ENST00000572334 NUDT10Q8NFP7 164 aa4.96□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 1041.2 ms