RNA–Protein interactions for RNA: ENST00000569245.5

COMMD4-225, Transcript of COMM domain containing 4, human

TSL 2

Gene COMMD4, Length 867 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COMMD4-225	ENST00000569245	RNF141	Q8WVD5	230 aa		10.86	□□□□□ -0.67
COMMD4-225	ENST00000569245	VSIR	Q9H7M9	311 aa		10.86	□□□□□ -0.67
COMMD4-225	ENST00000569245	TRAV25	A0A0B4J276	109 aa		10.85	□□□□□ -0.67
COMMD4-225	ENST00000569245		K7EMT4	169 aa		10.85	□□□□□ -0.67
COMMD4-225	ENST00000569245	FAM74A1	Q5RGS3	127 aa		10.85	□□□□□ -0.67
COMMD4-225	ENST00000569245	OR1L4	Q8NGR5	311 aa		10.85	□□□□□ -0.67
COMMD4-225	ENST00000569245	TM2D3	Q9BRN9	247 aa		10.85	□□□□□ -0.67
COMMD4-225	ENST00000569245	WFDC10A	Q9H1F0	79 aa		10.85	□□□□□ -0.67
COMMD4-225	ENST00000569245	SRD5A3	Q9H8P0	318 aa		10.85	□□□□□ -0.67
COMMD4-225	ENST00000569245	RPRM	Q9NS64	109 aa		10.85	□□□□□ -0.67
COMMD4-225	ENST00000569245	STAB2	Q8WWQ8	2551 aa		10.84	□□□□□ -0.67
COMMD4-225	ENST00000569245	ELOA3C	A0A087WX78	387 aa	Predicted RBP	10.84	□□□□□ -0.67
COMMD4-225	ENST00000569245	RAB2A	P61019	212 aa		10.84	□□□□□ -0.67
COMMD4-225	ENST00000569245	OR10G4	Q8NGN3	311 aa		10.84	□□□□□ -0.67
COMMD4-225	ENST00000569245	OR10G9	Q8NGN4	311 aa		10.84	□□□□□ -0.67
COMMD4-225	ENST00000569245	OR10G7	Q8NGN6	311 aa		10.84	□□□□□ -0.67
COMMD4-225	ENST00000569245	GATAD1	Q8WUU5	269 aa		10.84	□□□□□ -0.67
COMMD4-225	ENST00000569245	TMEM37	Q8WXS4	190 aa		10.84	□□□□□ -0.67
COMMD4-225	ENST00000569245	RNF125	Q96EQ8	232 aa		10.84	□□□□□ -0.67
COMMD4-225	ENST00000569245	SAT2	Q96F10	170 aa	Predicted RBP	10.84	□□□□□ -0.67
COMMD4-225	ENST00000569245	PFDN5	Q99471	154 aa		10.84	□□□□□ -0.67
COMMD4-225	ENST00000569245	SPATA25	Q9BR10	227 aa		10.84	□□□□□ -0.67
COMMD4-225	ENST00000569245	DNAJC4	Q9NNZ3	241 aa		10.84	□□□□□ -0.67
COMMD4-225	ENST00000569245	PUS1	Q9Y606	427 aa	Known RBP eCLIP	10.84	□□□□□ -0.67
COMMD4-225	ENST00000569245	IGHV3-49	A0A0A0MS15	119 aa		10.83	□□□□□ -0.68
COMMD4-225	ENST00000569245	HYPM	O75409	117 aa		10.83	□□□□□ -0.68
COMMD4-225	ENST00000569245	IL4	P05112	153 aa		10.83	□□□□□ -0.68
COMMD4-225	ENST00000569245	GCSAML	Q5JQS6	135 aa		10.83	□□□□□ -0.68
COMMD4-225	ENST00000569245	TOMM20L	Q6UXN7	152 aa		10.83	□□□□□ -0.68
COMMD4-225	ENST00000569245	PATE2	Q6UY27	113 aa		10.83	□□□□□ -0.68
COMMD4-225	ENST00000569245	RPP25L	Q8N5L8	163 aa	Known RBP	10.83	□□□□□ -0.68
COMMD4-225	ENST00000569245	RNF2	Q99496	336 aa		10.83	□□□□□ -0.68
COMMD4-225	ENST00000569245	SPAG8	Q99932	426 aa	Predicted RBP	10.83	□□□□□ -0.68
COMMD4-225	ENST00000569245	ZFAND3	Q9H8U3	227 aa		10.83	□□□□□ -0.68
COMMD4-225	ENST00000569245	SMPX	Q9UHP9	88 aa		10.83	□□□□□ -0.68
COMMD4-225	ENST00000569245	IGHV7-4-1	A0A0J9YVY3	117 aa		10.82	□□□□□ -0.68
COMMD4-225	ENST00000569245	RBMY1B	A6NDE4	496 aa	Known RBP	10.82	□□□□□ -0.68
COMMD4-225	ENST00000569245	RBMY1E	A6NEQ0	496 aa	Known RBP	10.82	□□□□□ -0.68
COMMD4-225	ENST00000569245	COX7A2P2	O60397	106 aa		10.82	□□□□□ -0.68
COMMD4-225	ENST00000569245	OR5G3	P0C626	314 aa		10.82	□□□□□ -0.68
COMMD4-225	ENST00000569245	RBMY1D	P0C7P1	496 aa	Known RBP	10.82	□□□□□ -0.68
COMMD4-225	ENST00000569245	ORM2	P19652	201 aa		10.82	□□□□□ -0.68
COMMD4-225	ENST00000569245	LYZ	P61626	148 aa		10.82	□□□□□ -0.68
COMMD4-225	ENST00000569245	RHOB	P62745	196 aa		10.82	□□□□□ -0.68
COMMD4-225	ENST00000569245	BLOC1S1	P78537	153 aa		10.82	□□□□□ -0.68
COMMD4-225	ENST00000569245	C10orf113	Q5VZT2	155 aa		10.82	□□□□□ -0.68
COMMD4-225	ENST00000569245	OR1B1	Q8NGR6	318 aa		10.82	□□□□□ -0.68
COMMD4-225	ENST00000569245	RHPN1-AS1	Q9BWJ2	59 aa		10.82	□□□□□ -0.68
COMMD4-225	ENST00000569245	MRPL32	Q9BYC8	188 aa	Known RBP	10.82	□□□□□ -0.68
COMMD4-225	ENST00000569245	ACTR3C	Q9C0K3	210 aa	Predicted RBP	10.82	□□□□□ -0.68
COMMD4-225	ENST00000569245	NBEAL2	Q6ZNJ1	2754 aa		10.81	□□□□□ -0.68
COMMD4-225	ENST00000569245	IGHV3OR16-13	A0A075B7E8	117 aa		10.81	□□□□□ -0.68
COMMD4-225	ENST00000569245	IGHV3-74	A0A0B4J1X5	117 aa		10.81	□□□□□ -0.68
COMMD4-225	ENST00000569245	CTXND1	A0A1B0GTU2	59 aa		10.81	□□□□□ -0.68
COMMD4-225	ENST00000569245	ZNF705E	A8MWA4	302 aa	Predicted RBP	10.81	□□□□□ -0.68
COMMD4-225	ENST00000569245	CHEK1	O14757	476 aa		10.81	□□□□□ -0.68
COMMD4-225	ENST00000569245	TSPAN4	O14817	238 aa		10.81	□□□□□ -0.68
COMMD4-225	ENST00000569245	NMB	P08949	121 aa		10.81	□□□□□ -0.68
COMMD4-225	ENST00000569245	CDC34	P49427	236 aa	Predicted RBP	10.81	□□□□□ -0.68
COMMD4-225	ENST00000569245	FHIT	P49789	147 aa		10.81	□□□□□ -0.68
COMMD4-225	ENST00000569245	USF2	Q15853	346 aa	Predicted RBP	10.81	□□□□□ -0.68
COMMD4-225	ENST00000569245	ZNF726P1	Q15940	193 aa		10.81	□□□□□ -0.68
COMMD4-225	ENST00000569245	FAM122C	Q6P4D5	195 aa		10.81	□□□□□ -0.68
COMMD4-225	ENST00000569245	FAM213B	Q8TBF2	198 aa		10.81	□□□□□ -0.68
COMMD4-225	ENST00000569245	DOK5	Q9P104	306 aa		10.81	□□□□□ -0.68
COMMD4-225	ENST00000569245	FUT9	Q9Y231	359 aa		10.81	□□□□□ -0.68
COMMD4-225	ENST00000569245	HIGD1A	Q9Y241	93 aa		10.81	□□□□□ -0.68
COMMD4-225	ENST00000569245		A0A1W2PPV4	95 aa		10.8	□□□□□ -0.68
COMMD4-225	ENST00000569245	OR4C46	A6NHA9	309 aa		10.8	□□□□□ -0.68
COMMD4-225	ENST00000569245	S100A7	P31151	101 aa		10.8	□□□□□ -0.68
COMMD4-225	ENST00000569245	BMI1	P35226	326 aa		10.8	□□□□□ -0.68
COMMD4-225	ENST00000569245	RAB14	P61106	215 aa		10.8	□□□□□ -0.68
COMMD4-225	ENST00000569245	CLLU1	Q5K131	121 aa		10.8	□□□□□ -0.68
COMMD4-225	ENST00000569245	FAM78B	Q5VT40	261 aa		10.8	□□□□□ -0.68
COMMD4-225	ENST00000569245	LINC00322	Q6ZN03	302 aa	Predicted RBP	10.8	□□□□□ -0.68
COMMD4-225	ENST00000569245	S100A7A	Q86SG5	101 aa		10.8	□□□□□ -0.68
COMMD4-225	ENST00000569245	MBD3L1	Q8WWY6	194 aa		10.8	□□□□□ -0.68
COMMD4-225	ENST00000569245	RAB24	Q969Q5	203 aa		10.8	□□□□□ -0.68
COMMD4-225	ENST00000569245	PBDC1	Q9BVG4	233 aa		10.8	□□□□□ -0.68
COMMD4-225	ENST00000569245	SEPSECS	Q9HD40	501 aa	Known RBP	10.8	□□□□□ -0.68
COMMD4-225	ENST00000569245	RABAC1	Q9UI14	185 aa		10.8	□□□□□ -0.68
COMMD4-225	ENST00000569245	IGKV3-7	A0A075B6H7	116 aa		10.79	□□□□□ -0.68
COMMD4-225	ENST00000569245	TRAV1-1	A0A0B4J248	108 aa		10.79	□□□□□ -0.68
COMMD4-225	ENST00000569245	TFPI2	P48307	235 aa		10.79	□□□□□ -0.68
COMMD4-225	ENST00000569245	RPL11	P62913	178 aa	Known RBP	10.79	□□□□□ -0.68
COMMD4-225	ENST00000569245	SSX7	Q7RTT5	188 aa		10.79	□□□□□ -0.68
COMMD4-225	ENST00000569245	LINC00305	Q7Z4B0	112 aa		10.79	□□□□□ -0.68
COMMD4-225	ENST00000569245	LYPD6B	Q8NI32	183 aa		10.79	□□□□□ -0.68
COMMD4-225	ENST00000569245	MUC7	Q8TAX7	377 aa		10.79	□□□□□ -0.68
COMMD4-225	ENST00000569245	SLC25A39	Q9BZJ4	359 aa	Predicted RBP	10.79	□□□□□ -0.68
COMMD4-225	ENST00000569245	RETN	Q9HD89	108 aa		10.79	□□□□□ -0.68
COMMD4-225	ENST00000569245	LOC102724200	A0A096LPH7	203 aa	Predicted RBP	10.78	□□□□□ -0.68
COMMD4-225	ENST00000569245	IGHV3-66	A0A0C4DH42	116 aa		10.78	□□□□□ -0.68
COMMD4-225	ENST00000569245	C3orf84	H3BNL1	204 aa		10.78	□□□□□ -0.68
COMMD4-225	ENST00000569245	H2AFB1	P0C5Y9	115 aa		10.78	□□□□□ -0.68
COMMD4-225	ENST00000569245	STAG3L2	P0CL84	134 aa		10.78	□□□□□ -0.68
COMMD4-225	ENST00000569245	STAG3L3	P0CL85	134 aa		10.78	□□□□□ -0.68
COMMD4-225	ENST00000569245	NPPC	P23582	126 aa		10.78	□□□□□ -0.68
COMMD4-225	ENST00000569245	SPATA31B1P	Q5VZV4	182 aa		10.78	□□□□□ -0.68
COMMD4-225	ENST00000569245	MIR17HG	Q75NE6	70 aa		10.78	□□□□□ -0.68

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