RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 FGL1Q08830 312 aa11.88□□□□□ -0.51
CLN3-211ENST00000564091 TMEM128Q5BJH2 165 aa11.88□□□□□ -0.51
CLN3-211ENST00000564091 BPIFCQ8NFQ6 507 aa11.88□□□□□ -0.51
CLN3-211ENST00000564091 OR1B1Q8NGR6 318 aa11.88□□□□□ -0.51
CLN3-211ENST00000564091 TMEM147Q9BVK8 224 aa11.88□□□□□ -0.51
CLN3-211ENST00000564091 SLC45A2Q9UMX9 530 aa11.88□□□□□ -0.51
CLN3-211ENST00000564091 APOBP04114 4563 aaKnown RBP11.87□□□□□ -0.51
CLN3-211ENST00000564091 MED6O75586 246 aa11.87□□□□□ -0.51
CLN3-211ENST00000564091 INSP01308 110 aa11.87□□□□□ -0.51
CLN3-211ENST00000564091 SLC25A6P12236 298 aa11.87□□□□□ -0.51
CLN3-211ENST00000564091 FCN2Q15485 313 aa11.87□□□□□ -0.51
CLN3-211ENST00000564091 SPANXN5Q5MJ07 72 aa11.87□□□□□ -0.51
CLN3-211ENST00000564091 BAP18Q8IXM2 172 aa11.87□□□□□ -0.51
CLN3-211ENST00000564091 LRTM2Q8N967 370 aa11.87□□□□□ -0.51
CLN3-211ENST00000564091 OR4D5Q8NGN0 318 aa11.87□□□□□ -0.51
CLN3-211ENST00000564091 RAB2BQ8WUD1 216 aa11.87□□□□□ -0.51
CLN3-211ENST00000564091 CIB3Q96Q77 187 aaPredicted RBP11.87□□□□□ -0.51
CLN3-211ENST00000564091 ATG101Q9BSB4 218 aa11.87□□□□□ -0.51
CLN3-211ENST00000564091 SLIRPQ9GZT3 109 aaKnown RBP11.87□□□□□ -0.51
CLN3-211ENST00000564091 TRAV12-2A0A075B6T6 113 aa11.86□□□□□ -0.51
CLN3-211ENST00000564091 PIGBOS1A0A0B4J2F0 54 aa11.86□□□□□ -0.51
CLN3-211ENST00000564091 H3BP45 60 aa11.86□□□□□ -0.51
CLN3-211ENST00000564091 SYNGR2O43760 224 aa11.86□□□□□ -0.51
CLN3-211ENST00000564091 DUSP14O95147 198 aaKnown RBP11.86□□□□□ -0.51
CLN3-211ENST00000564091 HOXB5P09067 269 aa11.86□□□□□ -0.51
CLN3-211ENST00000564091 PRB4P10163 310 aaPredicted RBP11.86□□□□□ -0.51
CLN3-211ENST00000564091 AZU1P20160 251 aa11.86□□□□□ -0.51
CLN3-211ENST00000564091 RPP30P78346 268 aaKnown RBP11.86□□□□□ -0.51
CLN3-211ENST00000564091 AKR1C1Q04828 323 aa11.86□□□□□ -0.51
CLN3-211ENST00000564091 TNP2Q05952 138 aa11.86□□□□□ -0.51
CLN3-211ENST00000564091 C15orf53Q8NAA6 179 aa11.86□□□□□ -0.51
CLN3-211ENST00000564091 MUC4Q99102 2169 aa11.85□□□□□ -0.51
CLN3-211ENST00000564091 LYRM9A8MSI8 78 aa11.85□□□□□ -0.51
CLN3-211ENST00000564091 F5H768 121 aa11.85□□□□□ -0.51
CLN3-211ENST00000564091 FAUP35544 74 aaKnown RBP11.85□□□□□ -0.51
CLN3-211ENST00000564091 TMBIM6P55061 237 aa11.85□□□□□ -0.51
CLN3-211ENST00000564091 PPP1R1AQ13522 171 aa11.85□□□□□ -0.51
CLN3-211ENST00000564091 ACOT7LQ6ZUV0 252 aa11.85□□□□□ -0.51
CLN3-211ENST00000564091 GPR82Q96P67 336 aa11.85□□□□□ -0.51
CLN3-211ENST00000564091 SLC25A39Q9BZJ4 359 aaPredicted RBP11.85□□□□□ -0.51
CLN3-211ENST00000564091 PLAC8L1A1L4L8 177 aa11.84□□□□□ -0.51
CLN3-211ENST00000564091 SFT2D2O95562 160 aa11.84□□□□□ -0.51
CLN3-211ENST00000564091 NUDT3O95989 172 aa11.84□□□□□ -0.51
CLN3-211ENST00000564091 FAM3BP58499 235 aaPredicted RBP11.84□□□□□ -0.51
CLN3-211ENST00000564091 ZNF738Q8NE65 137 aa11.84□□□□□ -0.51
CLN3-211ENST00000564091 TRIM63Q969Q1 353 aa11.84□□□□□ -0.51
CLN3-211ENST00000564091 NBDYA0A0U1RRE5 68 aa11.83□□□□□ -0.52
CLN3-211ENST00000564091 SMCO3A2RU48 225 aa11.83□□□□□ -0.52
CLN3-211ENST00000564091 H3BRN7 92 aa11.83□□□□□ -0.52
CLN3-211ENST00000564091 PYDC2Q56P42 97 aa11.83□□□□□ -0.52
CLN3-211ENST00000564091 TOMM5Q8N4H5 51 aa11.83□□□□□ -0.52
CLN3-211ENST00000564091 ZNRF2Q8NHG8 242 aa11.83□□□□□ -0.52
CLN3-211ENST00000564091 MCFD2Q8NI22 146 aa11.83□□□□□ -0.52
CLN3-211ENST00000564091 LINC01587Q99440 93 aa11.83□□□□□ -0.52
CLN3-211ENST00000564091 SHANK2-AS3Q9BTD1 123 aa11.83□□□□□ -0.52
CLN3-211ENST00000564091 STRAPQ9Y3F4 350 aaKnown RBP11.83□□□□□ -0.52
CLN3-211ENST00000564091 C16orf90A8MZG2 172 aa11.82□□□□□ -0.52
CLN3-211ENST00000564091 H3BMQ9 156 aa11.82□□□□□ -0.52
CLN3-211ENST00000564091 BOLA2-SMG1P6H3BVE0 249 aa11.82□□□□□ -0.52
CLN3-211ENST00000564091 IL5P05113 134 aa11.82□□□□□ -0.52
CLN3-211ENST00000564091 HTN1P15515 57 aa11.82□□□□□ -0.52
CLN3-211ENST00000564091 TSPOP30536 169 aa11.82□□□□□ -0.52
CLN3-211ENST00000564091 S100A7P31151 101 aa11.82□□□□□ -0.52
CLN3-211ENST00000564091 B2MP61769 119 aa11.82□□□□□ -0.52
CLN3-211ENST00000564091 RHOBP62745 196 aa11.82□□□□□ -0.52
CLN3-211ENST00000564091 HIST1H1AQ02539 215 aaPredicted RBP11.82□□□□□ -0.52
CLN3-211ENST00000564091 CYP2G1PQ6ZSU1 146 aa11.82□□□□□ -0.52
CLN3-211ENST00000564091 TMEM144Q7Z5S9 345 aa11.82□□□□□ -0.52
CLN3-211ENST00000564091 BCL7BQ9BQE9 202 aa11.82□□□□□ -0.52
CLN3-211ENST00000564091 HIGD1AQ9Y241 93 aa11.82□□□□□ -0.52
CLN3-211ENST00000564091 HYPMO75409 117 aa11.81□□□□□ -0.52
CLN3-211ENST00000564091 AP3S2P59780 193 aa11.81□□□□□ -0.52
CLN3-211ENST00000564091 RAP2BP61225 183 aa11.81□□□□□ -0.52
CLN3-211ENST00000564091 POLR2GP62487 172 aaKnown RBP eCLIP11.81□□□□□ -0.52
CLN3-211ENST00000564091 C6orf223Q8N319 242 aa11.81□□□□□ -0.52
CLN3-211ENST00000564091 OR8A1Q8NGG7 326 aa11.81□□□□□ -0.52
CLN3-211ENST00000564091 UHRF2Q96PU4 802 aa11.81□□□□□ -0.52
CLN3-211ENST00000564091 SLC25A21Q9BQT8 299 aaPredicted RBP11.81□□□□□ -0.52
CLN3-211ENST00000564091 ATP5G1P05496 136 aa11.8□□□□□ -0.52
CLN3-211ENST00000564091 OR5G3P0C626 314 aa11.8□□□□□ -0.52
CLN3-211ENST00000564091 LINC00869P0C866 280 aa11.8□□□□□ -0.52
CLN3-211ENST00000564091 RPL7P18124 248 aaKnown RBP11.8□□□□□ -0.52
CLN3-211ENST00000564091 CXCL3P19876 107 aa11.8□□□□□ -0.52
CLN3-211ENST00000564091 ATP5G3P48201 142 aa11.8□□□□□ -0.52
CLN3-211ENST00000564091 ID3Q02535 119 aa11.8□□□□□ -0.52
CLN3-211ENST00000564091 PPP1R14DQ9NXH3 145 aa11.8□□□□□ -0.52
CLN3-211ENST00000564091 LINC00588Q9Y4M8 146 aa11.8□□□□□ -0.52
CLN3-211ENST00000564091 V9GYH0 126 aa11.8□□□□□ -0.52
CLN3-211ENST00000564091 CBY3A6NI87 242 aa11.79□□□□□ -0.52
CLN3-211ENST00000564091 NOL3O60936 208 aaKnown RBP11.79□□□□□ -0.52
CLN3-211ENST00000564091 ADAP1O75689 374 aa11.79□□□□□ -0.52
CLN3-211ENST00000564091 CCNKO75909 580 aa11.79□□□□□ -0.52
CLN3-211ENST00000564091 CCL18P55774 89 aa11.79□□□□□ -0.52
CLN3-211ENST00000564091 TAS2R60P59551 318 aa11.79□□□□□ -0.52
CLN3-211ENST00000564091 RRAS2P62070 204 aaPredicted RBP11.79□□□□□ -0.52
CLN3-211ENST00000564091 PSG3Q16557 428 aa11.79□□□□□ -0.52
CLN3-211ENST00000564091 LRRC20Q8TCA0 184 aa11.79□□□□□ -0.52
CLN3-211ENST00000564091 RNF141Q8WVD5 230 aa11.79□□□□□ -0.52
CLN3-211ENST00000564091 PSENENQ9NZ42 101 aa11.79□□□□□ -0.52
CLN3-211ENST00000564091 PMS2P5A8MQ11 134 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 172.6 ms