RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 IFNA5P01569 189 aa10.64□□□□□ -0.71
USP3-205ENST00000557884 GALR1P47211 349 aa10.64□□□□□ -0.71
USP3-205ENST00000557884 GCSAMLQ5JQS6 135 aa10.64□□□□□ -0.71
USP3-205ENST00000557884 C10orf113Q5VZT2 155 aa10.64□□□□□ -0.71
USP3-205ENST00000557884 Q6ZNX1 250 aa10.64□□□□□ -0.71
USP3-205ENST00000557884 LINC00305Q7Z4B0 112 aa10.64□□□□□ -0.71
USP3-205ENST00000557884 ZNF709Q8N972 641 aa10.64□□□□□ -0.71
USP3-205ENST00000557884 SCGB1C1Q8TD33 95 aa10.64□□□□□ -0.71
USP3-205ENST00000557884 AQP10Q96PS8 301 aa10.64□□□□□ -0.71
USP3-205ENST00000557884 RSG1Q9BU20 258 aa10.64□□□□□ -0.71
USP3-205ENST00000557884 DNAJC4Q9NNZ3 241 aa10.64□□□□□ -0.71
USP3-205ENST00000557884 hCG_2014768A0A024R1R8 64 aa10.63□□□□□ -0.71
USP3-205ENST00000557884 ELOA3CA0A087WX78 387 aaPredicted RBP10.63□□□□□ -0.71
USP3-205ENST00000557884 RPL35AP18077 110 aaKnown RBP10.63□□□□□ -0.71
USP3-205ENST00000557884 CMC4P56277 68 aaPredicted RBP10.63□□□□□ -0.71
USP3-205ENST00000557884 HAGHQ16775 308 aa10.63□□□□□ -0.71
USP3-205ENST00000557884 PSMG4Q5JS54 123 aa10.63□□□□□ -0.71
USP3-205ENST00000557884 MORN5Q5VZ52 161 aa10.63□□□□□ -0.71
USP3-205ENST00000557884 S100A7AQ86SG5 101 aa10.63□□□□□ -0.71
USP3-205ENST00000557884 INO80EQ8NBZ0 244 aaPredicted RBP10.63□□□□□ -0.71
USP3-205ENST00000557884 OR1L4Q8NGR5 311 aa10.63□□□□□ -0.71
USP3-205ENST00000557884 FAM110AQ9BQ89 295 aa10.63□□□□□ -0.71
USP3-205ENST00000557884 BOLA1Q9Y3E2 137 aa10.63□□□□□ -0.71
USP3-205ENST00000557884 NBEAL2Q6ZNJ1 2754 aa10.63□□□□□ -0.71
USP3-205ENST00000557884 LOC102724200A0A096LPH7 203 aaPredicted RBP10.62□□□□□ -0.71
USP3-205ENST00000557884 TRAV5A0A0B4J249 113 aa10.62□□□□□ -0.71
USP3-205ENST00000557884 RNF222A6NCQ9 220 aa10.62□□□□□ -0.71
USP3-205ENST00000557884 SNRPCP09234 159 aaKnown RBP10.62□□□□□ -0.71
USP3-205ENST00000557884 RPL7P18124 248 aaKnown RBP10.62□□□□□ -0.71
USP3-205ENST00000557884 ATF4P18848 351 aaPredicted RBP10.62□□□□□ -0.71
USP3-205ENST00000557884 C17orf77Q96MU5 243 aa10.62□□□□□ -0.71
USP3-205ENST00000557884 PFDN5Q99471 154 aa10.62□□□□□ -0.71
USP3-205ENST00000557884 TNFSF18Q9UNG2 199 aa10.62□□□□□ -0.71
USP3-205ENST00000557884 RFNGQ9Y644 331 aa10.62□□□□□ -0.71
USP3-205ENST00000557884 KNCNA6PVL3 124 aa10.61□□□□□ -0.71
USP3-205ENST00000557884 C17orf112F2Z3M2 114 aa10.61□□□□□ -0.71
USP3-205ENST00000557884 ARPC5O15511 151 aa10.61□□□□□ -0.71
USP3-205ENST00000557884 SNRPD3P62318 126 aaKnown RBP10.61□□□□□ -0.71
USP3-205ENST00000557884 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.61□□□□□ -0.71
USP3-205ENST00000557884 LINC00322Q6ZN03 302 aaPredicted RBP10.61□□□□□ -0.71
USP3-205ENST00000557884 LINC00052Q96N35 136 aa10.61□□□□□ -0.71
USP3-205ENST00000557884 GPR82Q96P67 336 aa10.61□□□□□ -0.71
USP3-205ENST00000557884 KCNIP2Q9NS61 270 aa10.61□□□□□ -0.71
USP3-205ENST00000557884 SOCS3O14543 225 aa10.6□□□□□ -0.71
USP3-205ENST00000557884 FFAR4Q5NUL3 377 aa10.6□□□□□ -0.71
USP3-205ENST00000557884 SPATA31B1PQ5VZV4 182 aa10.6□□□□□ -0.71
USP3-205ENST00000557884 IGFL4Q6B9Z1 124 aa10.6□□□□□ -0.71
USP3-205ENST00000557884 C16orf92Q96LL3 132 aa10.6□□□□□ -0.71
USP3-205ENST00000557884 RETNQ9HD89 108 aa10.6□□□□□ -0.71
USP3-205ENST00000557884 H3BTX0 84 aa10.59□□□□□ -0.71
USP3-205ENST00000557884 NHLRC4P0CG21 123 aaPredicted RBP10.59□□□□□ -0.71
USP3-205ENST00000557884 ID1P41134 155 aa10.59□□□□□ -0.71
USP3-205ENST00000557884 PSMB3P49720 205 aa10.59□□□□□ -0.71
USP3-205ENST00000557884 MEOX2P50222 304 aa10.59□□□□□ -0.71
USP3-205ENST00000557884 DEFB1P60022 68 aa10.59□□□□□ -0.71
USP3-205ENST00000557884 ZNF266Q14584 549 aa10.59□□□□□ -0.71
USP3-205ENST00000557884 ACTL10Q5JWF8 245 aa10.59□□□□□ -0.71
USP3-205ENST00000557884 FAM78BQ5VT40 261 aa10.59□□□□□ -0.71
USP3-205ENST00000557884 BPIFA4PQ86YQ2 179 aa10.59□□□□□ -0.71
USP3-205ENST00000557884 HSD17B11Q8NBQ5 300 aa10.59□□□□□ -0.71
USP3-205ENST00000557884 GATAD1Q8WUU5 269 aa10.59□□□□□ -0.71
USP3-205ENST00000557884 C20orf173Q96LM9 149 aa10.59□□□□□ -0.71
USP3-205ENST00000557884 PARD6GQ9BYG4 376 aaPredicted RBP10.59□□□□□ -0.71
USP3-205ENST00000557884 MRPS12O15235 138 aaKnown RBP10.58□□□□□ -0.72
USP3-205ENST00000557884 MIR17HGQ75NE6 70 aa10.58□□□□□ -0.72
USP3-205ENST00000557884 STHQ8IWL8 128 aa10.58□□□□□ -0.72
USP3-205ENST00000557884 OR11H4Q8NGC9 324 aa10.58□□□□□ -0.72
USP3-205ENST00000557884 TM2D3Q9BRN9 247 aa10.58□□□□□ -0.72
USP3-205ENST00000557884 MFFQ9GZY8 342 aa10.58□□□□□ -0.72
USP3-205ENST00000557884 ZMAT4Q9H898 229 aa10.58□□□□□ -0.72
USP3-205ENST00000557884 SEPSECSQ9HD40 501 aaKnown RBP10.58□□□□□ -0.72
USP3-205ENST00000557884 RNF24Q9Y225 148 aa10.58□□□□□ -0.72
USP3-205ENST00000557884 A0A087X0K7 114 aa10.57□□□□□ -0.72
USP3-205ENST00000557884 TRAV8-2A0A0B4J237 113 aa10.57□□□□□ -0.72
USP3-205ENST00000557884 ISLRO14498 428 aa10.57□□□□□ -0.72
USP3-205ENST00000557884 EIF3GO75821 320 aaKnown RBP eCLIP10.57□□□□□ -0.72
USP3-205ENST00000557884 APOC4P55056 127 aa10.57□□□□□ -0.72
USP3-205ENST00000557884 RPL7L1Q6DKI1 246 aaKnown RBP10.57□□□□□ -0.72
USP3-205ENST00000557884 RNF182Q8N6D2 247 aa10.57□□□□□ -0.72
USP3-205ENST00000557884 LRRC20Q8TCA0 184 aa10.57□□□□□ -0.72
USP3-205ENST00000557884 ST6GAL2Q96JF0 529 aa10.57□□□□□ -0.72
USP3-205ENST00000557884 TENM3Q9P273 2699 aa10.56□□□□□ -0.72
USP3-205ENST00000557884 H3BQ15 152 aa10.56□□□□□ -0.72
USP3-205ENST00000557884 PRB4P10163 310 aaPredicted RBP10.56□□□□□ -0.72
USP3-205ENST00000557884 ATP6V0CP27449 155 aa10.56□□□□□ -0.72
USP3-205ENST00000557884 HLA-DMBP28068 263 aa10.56□□□□□ -0.72
USP3-205ENST00000557884 SAMD13Q5VXD3 122 aa10.56□□□□□ -0.72
USP3-205ENST00000557884 RCHY1Q96PM5 261 aa10.56□□□□□ -0.72
USP3-205ENST00000557884 SPATA25Q9BR10 227 aa10.56□□□□□ -0.72
USP3-205ENST00000557884 U3KQK5 164 aa10.56□□□□□ -0.72
USP3-205ENST00000557884 A0A1B0GVG6 124 aa10.55□□□□□ -0.72
USP3-205ENST00000557884 F6UB75 175 aa10.55□□□□□ -0.72
USP3-205ENST00000557884 SLC17A3O00476 420 aa10.55□□□□□ -0.72
USP3-205ENST00000557884 IGLC2P0DOY2 106 aa10.55□□□□□ -0.72
USP3-205ENST00000557884 PYYP10082 97 aa10.55□□□□□ -0.72
USP3-205ENST00000557884 RAB2AP61019 212 aa10.55□□□□□ -0.72
USP3-205ENST00000557884 GDF5OSQ5U4N7 250 aa10.55□□□□□ -0.72
USP3-205ENST00000557884 TRPT1Q86TN4 253 aaKnown RBP10.55□□□□□ -0.72
USP3-205ENST00000557884 SLC25A2Q9BXI2 301 aa10.55□□□□□ -0.72
USP3-205ENST00000557884 SH3BGRL3Q9H299 93 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 1591.3 ms