RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 CSNK1G2-AS1Q8NCQ2 148 aa7.48□□□□□ -1.21
CCDC88C-206ENST00000553437 OR10P1Q8NGE3 313 aa7.48□□□□□ -1.21
CCDC88C-206ENST00000553437 C2orf50Q96LR7 162 aa7.48□□□□□ -1.21
CCDC88C-206ENST00000553437 SLC25A32Q9H2D1 315 aa7.48□□□□□ -1.21
CCDC88C-206ENST00000553437 NPVFQ9HCQ7 196 aa7.48□□□□□ -1.21
CCDC88C-206ENST00000553437 C5orf51A6NDU8 294 aa7.47□□□□□ -1.21
CCDC88C-206ENST00000553437 DEDDO75618 318 aa7.47□□□□□ -1.21
CCDC88C-206ENST00000553437 DEFB1P60022 68 aa7.47□□□□□ -1.21
CCDC88C-206ENST00000553437 TMEM41BQ5BJD5 291 aa7.47□□□□□ -1.21
CCDC88C-206ENST00000553437 GDF5OSQ5U4N7 250 aa7.47□□□□□ -1.21
CCDC88C-206ENST00000553437 ZNF767PQ75MW2 155 aa7.47□□□□□ -1.21
CCDC88C-206ENST00000553437 SLC7A5P1Q8MH63 180 aa7.47□□□□□ -1.21
CCDC88C-206ENST00000553437 OR1B1Q8NGR6 318 aa7.47□□□□□ -1.21
CCDC88C-206ENST00000553437 GGACTQ9BVM4 153 aa7.47□□□□□ -1.21
CCDC88C-206ENST00000553437 C11orf68Q9H3H3 251 aaKnown RBP7.47□□□□□ -1.21
CCDC88C-206ENST00000553437 ALMS1Q8TCU4 4167 aa7.47□□□□□ -1.21
CCDC88C-206ENST00000553437 HERC2O95714 4834 aa7.47□□□□□ -1.21
CCDC88C-206ENST00000553437 ZNF705EA8MWA4 302 aaPredicted RBP7.46□□□□□ -1.22
CCDC88C-206ENST00000553437 H3BRN7 92 aa7.46□□□□□ -1.22
CCDC88C-206ENST00000553437 HLA-DRB4P13762 266 aa7.46□□□□□ -1.22
CCDC88C-206ENST00000553437 ID1P41134 155 aa7.46□□□□□ -1.22
CCDC88C-206ENST00000553437 PSMB3P49720 205 aa7.46□□□□□ -1.22
CCDC88C-206ENST00000553437 SELENOTP62341 195 aa7.46□□□□□ -1.22
CCDC88C-206ENST00000553437 SLC38A11Q08AI6 406 aa7.46□□□□□ -1.22
CCDC88C-206ENST00000553437 PMS2P11Q13670 270 aa7.46□□□□□ -1.22
CCDC88C-206ENST00000553437 PATE2Q6UY27 113 aa7.46□□□□□ -1.22
CCDC88C-206ENST00000553437 TMEM217Q8N7C4 229 aa7.46□□□□□ -1.22
CCDC88C-206ENST00000553437 OR11H7Q8NGC8 314 aa7.46□□□□□ -1.22
CCDC88C-206ENST00000553437 C20orf173Q96LM9 149 aa7.46□□□□□ -1.22
CCDC88C-206ENST00000553437 LINC00052Q96N35 136 aa7.46□□□□□ -1.22
CCDC88C-206ENST00000553437 SHANK2-AS3Q9BTD1 123 aa7.46□□□□□ -1.22
CCDC88C-206ENST00000553437 RSG1Q9BU20 258 aa7.46□□□□□ -1.22
CCDC88C-206ENST00000553437 TMEM147Q9BVK8 224 aa7.46□□□□□ -1.22
CCDC88C-206ENST00000553437 SCRT1Q9BWW7 348 aa7.46□□□□□ -1.22
CCDC88C-206ENST00000553437 SLC25A39Q9BZJ4 359 aaPredicted RBP7.46□□□□□ -1.22
CCDC88C-206ENST00000553437 SLC25A22Q9H936 323 aa7.46□□□□□ -1.22
CCDC88C-206ENST00000553437 GPN1Q9HCN4 374 aaPredicted RBP7.46□□□□□ -1.22
CCDC88C-206ENST00000553437 CLEC5AQ9NY25 188 aa7.46□□□□□ -1.22
CCDC88C-206ENST00000553437 DOK5Q9P104 306 aa7.46□□□□□ -1.22
CCDC88C-206ENST00000553437 MGAT4CQ9UBM8 478 aa7.46□□□□□ -1.22
CCDC88C-206ENST00000553437 LSM5Q9Y4Y9 91 aaKnown RBP7.46□□□□□ -1.22
CCDC88C-206ENST00000553437 HLA-DRB4X5D2U9 266 aa7.46□□□□□ -1.22
CCDC88C-206ENST00000553437 X6R8D5 127 aa7.46□□□□□ -1.22
CCDC88C-206ENST00000553437 CXorf65A6NEN9 183 aa7.45□□□□□ -1.22
CCDC88C-206ENST00000553437 FAM24AA6NFZ4 105 aa7.45□□□□□ -1.22
CCDC88C-206ENST00000553437 L7N2F9 121 aa7.45□□□□□ -1.22
CCDC88C-206ENST00000553437 ISLRO14498 428 aa7.45□□□□□ -1.22
CCDC88C-206ENST00000553437 DEFB4AO15263 64 aa7.45□□□□□ -1.22
CCDC88C-206ENST00000553437 HYPMO75409 117 aa7.45□□□□□ -1.22
CCDC88C-206ENST00000553437 LINC00869P0C866 280 aa7.45□□□□□ -1.22
CCDC88C-206ENST00000553437 RBMY1A1P0DJD3 496 aaKnown RBP7.45□□□□□ -1.22
CCDC88C-206ENST00000553437 RBMY1CP0DJD4 496 aa7.45□□□□□ -1.22
CCDC88C-206ENST00000553437 GALR1P47211 349 aa7.45□□□□□ -1.22
CCDC88C-206ENST00000553437 VAMP2P63027 116 aa7.45□□□□□ -1.22
CCDC88C-206ENST00000553437 RBMY1FQ15415 496 aaKnown RBP7.45□□□□□ -1.22
CCDC88C-206ENST00000553437 Q5BKY6 102 aa7.45□□□□□ -1.22
CCDC88C-206ENST00000553437 CEMP1Q6PRD7 247 aaPredicted RBP7.45□□□□□ -1.22
CCDC88C-206ENST00000553437 TEPPQ6URK8 271 aa7.45□□□□□ -1.22
CCDC88C-206ENST00000553437 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa7.45□□□□□ -1.22
CCDC88C-206ENST00000553437 FOXI2Q6ZQN5 318 aa7.45□□□□□ -1.22
CCDC88C-206ENST00000553437 C9orf62Q8N4C0 152 aa7.45□□□□□ -1.22
CCDC88C-206ENST00000553437 Q8NAQ8 132 aa7.45□□□□□ -1.22
CCDC88C-206ENST00000553437 CLUHP3Q96NS8 147 aa7.45□□□□□ -1.22
CCDC88C-206ENST00000553437 SAV1Q9H4B6 383 aaPredicted RBP7.45□□□□□ -1.22
CCDC88C-206ENST00000553437 HIGD1AQ9Y241 93 aa7.45□□□□□ -1.22
CCDC88C-206ENST00000553437 TRAV8-2A0A0B4J237 113 aa7.44□□□□□ -1.22
CCDC88C-206ENST00000553437 F6UB75 175 aa7.44□□□□□ -1.22
CCDC88C-206ENST00000553437 AGPAT2O15120 278 aa7.44□□□□□ -1.22
CCDC88C-206ENST00000553437 SSNA1O43805 119 aa7.44□□□□□ -1.22
CCDC88C-206ENST00000553437 CST7O76096 145 aa7.44□□□□□ -1.22
CCDC88C-206ENST00000553437 S100A7P31151 101 aa7.44□□□□□ -1.22
CCDC88C-206ENST00000553437 MEOX2P50222 304 aa7.44□□□□□ -1.22
CCDC88C-206ENST00000553437 CAV2P51636 162 aa7.44□□□□□ -1.22
CCDC88C-206ENST00000553437 RAP2BP61225 183 aa7.44□□□□□ -1.22
CCDC88C-206ENST00000553437 RAB32Q13637 225 aa7.44□□□□□ -1.22
CCDC88C-206ENST00000553437 SAMD13Q5VXD3 122 aa7.44□□□□□ -1.22
CCDC88C-206ENST00000553437 TMEM252Q8N6L7 170 aa7.44□□□□□ -1.22
CCDC88C-206ENST00000553437 GPR82Q96P67 336 aa7.44□□□□□ -1.22
CCDC88C-206ENST00000553437 UHRF2Q96PU4 802 aa7.44□□□□□ -1.22
CCDC88C-206ENST00000553437 MGST2Q99735 147 aa7.44□□□□□ -1.22
CCDC88C-206ENST00000553437 LYRM2Q9NU23 88 aaPredicted RBP7.44□□□□□ -1.22
CCDC88C-206ENST00000553437 HSPB11Q9Y547 144 aa7.44□□□□□ -1.22
CCDC88C-206ENST00000553437 IGHV4-28A0A0C4DH34 117 aa7.43□□□□□ -1.22
CCDC88C-206ENST00000553437 A0A0J9YX75 114 aa7.43□□□□□ -1.22
CCDC88C-206ENST00000553437 IGSF23A1L1A6 192 aa7.43□□□□□ -1.22
CCDC88C-206ENST00000553437 NUPR2A6NF83 97 aa7.43□□□□□ -1.22
CCDC88C-206ENST00000553437 SMLR1H3BR10 107 aa7.43□□□□□ -1.22
CCDC88C-206ENST00000553437 MRPS12O15235 138 aaKnown RBP7.43□□□□□ -1.22
CCDC88C-206ENST00000553437 JTBO76095 146 aa7.43□□□□□ -1.22
CCDC88C-206ENST00000553437 SIX6O95475 246 aa7.43□□□□□ -1.22
CCDC88C-206ENST00000553437 OR5G3P0C626 314 aa7.43□□□□□ -1.22
CCDC88C-206ENST00000553437 MIFP14174 115 aa7.43□□□□□ -1.22
CCDC88C-206ENST00000553437 NANOS2P60321 138 aaKnown RBP7.43□□□□□ -1.22
CCDC88C-206ENST00000553437 S100A10P60903 97 aa7.43□□□□□ -1.22
CCDC88C-206ENST00000553437 NUTF2P61970 127 aaKnown RBP7.43□□□□□ -1.22
CCDC88C-206ENST00000553437 VWC2Q2TAL6 325 aa7.43□□□□□ -1.22
CCDC88C-206ENST00000553437 PXDC1Q5TGL8 231 aa7.43□□□□□ -1.22
CCDC88C-206ENST00000553437 ZNF546Q86UE3 836 aa7.43□□□□□ -1.22
CCDC88C-206ENST00000553437 ZNF709Q8N972 641 aa7.43□□□□□ -1.22
CCDC88C-206ENST00000553437 C11orf45Q8TAV5 145 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 115.2 ms