RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 RNF2Q99496 336 aa8.7□□□□□ -1.02
CUX1-212ENST00000547394 EPDR1Q9UM22 224 aa8.7□□□□□ -1.02
CUX1-212ENST00000547394 IGLV11-55A0A075B6I3 123 aa8.69□□□□□ -1.02
CUX1-212ENST00000547394 FAM106CPP0CH98 169 aa8.69□□□□□ -1.02
CUX1-212ENST00000547394 CD99P14209 185 aa8.69□□□□□ -1.02
CUX1-212ENST00000547394 PDLIM4P50479 330 aa8.69□□□□□ -1.02
CUX1-212ENST00000547394 RPEL1Q2QD12 228 aa8.69□□□□□ -1.02
CUX1-212ENST00000547394 GOLT1AQ6ZVE7 132 aa8.69□□□□□ -1.02
CUX1-212ENST00000547394 RNF125Q96EQ8 232 aa8.69□□□□□ -1.02
CUX1-212ENST00000547394 NF1P21359 2839 aa8.69□□□□□ -1.02
CUX1-212ENST00000547394 ZNF207O43670 478 aaKnown RBP8.69□□□□□ -1.02
CUX1-212ENST00000547394 AMY1AP04745 511 aa8.69□□□□□ -1.02
CUX1-212ENST00000547394 GPR183P32249 361 aa8.69□□□□□ -1.02
CUX1-212ENST00000547394 UBE2G1P62253 170 aa8.69□□□□□ -1.02
CUX1-212ENST00000547394 FOXL1Q12952 345 aa8.69□□□□□ -1.02
CUX1-212ENST00000547394 C1orf122Q6ZSJ8 110 aa8.69□□□□□ -1.02
CUX1-212ENST00000547394 FBXL7Q9UJT9 491 aa8.69□□□□□ -1.02
CUX1-212ENST00000547394 SNURFLB1AK76 121 aa8.68□□□□□ -1.02
CUX1-212ENST00000547394 GNB4Q9HAV0 340 aa8.68□□□□□ -1.02
CUX1-212ENST00000547394 C21orf62Q9NYP8 219 aa8.68□□□□□ -1.02
CUX1-212ENST00000547394 GCGP01275 180 aa8.68□□□□□ -1.02
CUX1-212ENST00000547394 AMBPP02760 352 aa8.68□□□□□ -1.02
CUX1-212ENST00000547394 GZMBP10144 247 aa8.68□□□□□ -1.02
CUX1-212ENST00000547394 MYCNOSP40205 109 aa8.68□□□□□ -1.02
CUX1-212ENST00000547394 MINOS1Q5TGZ0 78 aa8.68□□□□□ -1.02
CUX1-212ENST00000547394 LCNL1Q6ZST4 164 aa8.68□□□□□ -1.02
CUX1-212ENST00000547394 CIARTQ8N365 385 aaPredicted RBP8.68□□□□□ -1.02
CUX1-212ENST00000547394 CDC42EP3Q9UKI2 254 aa8.68□□□□□ -1.02
CUX1-212ENST00000547394 MINOS1-NBL1R4GNA1 71 aa8.68□□□□□ -1.02
CUX1-212ENST00000547394 DDTP30046 118 aa8.67□□□□□ -1.02
CUX1-212ENST00000547394 C15orf32Q32M92 178 aa8.67□□□□□ -1.02
CUX1-212ENST00000547394 PRNTQ86SH4 94 aa8.67□□□□□ -1.02
CUX1-212ENST00000547394 NUDT10Q8NFP7 164 aa8.67□□□□□ -1.02
CUX1-212ENST00000547394 NUDT11Q96G61 164 aa8.67□□□□□ -1.02
CUX1-212ENST00000547394 MRPL18Q9H0U6 180 aaKnown RBP8.67□□□□□ -1.02
CUX1-212ENST00000547394 MRPL27Q9P0M9 148 aaKnown RBP8.67□□□□□ -1.02
CUX1-212ENST00000547394 PITPNC1Q9UKF7 332 aa8.67□□□□□ -1.02
CUX1-212ENST00000547394 ACANP16112 2415 aa8.67□□□□□ -1.02
CUX1-212ENST00000547394 HELZ2Q9BYK8 2649 aaKnown RBP8.67□□□□□ -1.02
CUX1-212ENST00000547394 TSTD3H0UI37 97 aa8.67□□□□□ -1.02
CUX1-212ENST00000547394 AVPP01185 164 aa8.67□□□□□ -1.02
CUX1-212ENST00000547394 TYMSP04818 313 aa8.67□□□□□ -1.02
CUX1-212ENST00000547394 TCF24Q7RTU0 167 aa8.67□□□□□ -1.02
CUX1-212ENST00000547394 PIMREGQ9BSJ6 248 aa8.67□□□□□ -1.02
CUX1-212ENST00000547394 HLA-DMBP28068 263 aa8.67□□□□□ -1.02
CUX1-212ENST00000547394 MFAP4P55083 255 aa8.67□□□□□ -1.02
CUX1-212ENST00000547394 RHOGP84095 191 aa8.67□□□□□ -1.02
CUX1-212ENST00000547394 CLEC2AQ6UVW9 174 aa8.67□□□□□ -1.02
CUX1-212ENST00000547394 C10orf105Q8TEF2 133 aa8.67□□□□□ -1.02
CUX1-212ENST00000547394 SSBP4Q9BWG4 385 aaPredicted RBP8.67□□□□□ -1.02
CUX1-212ENST00000547394 TCRAP04437 139 aa8.66□□□□□ -1.02
CUX1-212ENST00000547394 CAMPP49913 170 aa8.66□□□□□ -1.02
CUX1-212ENST00000547394 PKIAP61925 76 aa8.66□□□□□ -1.02
CUX1-212ENST00000547394 Q6ZS46 218 aa8.66□□□□□ -1.02
CUX1-212ENST00000547394 TMEM183AQ8IXX5 376 aa8.66□□□□□ -1.02
CUX1-212ENST00000547394 NOL4LQ96MY1 436 aaPredicted RBP8.66□□□□□ -1.02
CUX1-212ENST00000547394 NAT8BQ9UHF3 227 aa8.66□□□□□ -1.02
CUX1-212ENST00000547394 ARL2-SNX15V9GYD0 113 aa8.66□□□□□ -1.02
CUX1-212ENST00000547394 CLEC3BP05452 202 aa8.66□□□□□ -1.02
CUX1-212ENST00000547394 CTSGP08311 255 aa8.66□□□□□ -1.02
CUX1-212ENST00000547394 BRS3P32247 399 aa8.66□□□□□ -1.02
CUX1-212ENST00000547394 KRTAP10-9P60411 292 aa8.66□□□□□ -1.02
CUX1-212ENST00000547394 RPL19P84098 196 aaKnown RBP8.66□□□□□ -1.02
CUX1-212ENST00000547394 SRSF1Q07955 248 aaKnown RBP eCLIP8.66□□□□□ -1.02
CUX1-212ENST00000547394 CLEC19AQ6UXS0 136 aa8.66□□□□□ -1.02
CUX1-212ENST00000547394 REC114Q7Z4M0 266 aa8.66□□□□□ -1.02
CUX1-212ENST00000547394 TTC9CQ8N5M4 171 aa8.66□□□□□ -1.02
CUX1-212ENST00000547394 SHANK2-AS3Q9BTD1 123 aa8.66□□□□□ -1.02
CUX1-212ENST00000547394 C7orf69Q9H7B7 122 aa8.66□□□□□ -1.02
CUX1-212ENST00000547394 NPIPB5A8MRT5 1133 aa8.65□□□□□ -1.02
CUX1-212ENST00000547394 VWC2LB2RUY7 222 aa8.65□□□□□ -1.02
CUX1-212ENST00000547394 HLA-DRB1P01911 266 aa8.65□□□□□ -1.02
CUX1-212ENST00000547394 EBI3Q14213 229 aa8.65□□□□□ -1.02
CUX1-212ENST00000547394 CMTM2Q8TAZ6 248 aa8.65□□□□□ -1.02
CUX1-212ENST00000547394 BTF3L4Q96K17 158 aa8.65□□□□□ -1.02
CUX1-212ENST00000547394 NOTCH2Q04721 2471 aa8.65□□□□□ -1.02
CUX1-212ENST00000547394 ITPR2Q14571 2701 aa8.65□□□□□ -1.02
CUX1-212ENST00000547394 TOMM40O96008 361 aa8.65□□□□□ -1.03
CUX1-212ENST00000547394 PLP1P60201 277 aa8.65□□□□□ -1.03
CUX1-212ENST00000547394 STXBP6Q8NFX7 210 aa8.65□□□□□ -1.03
CUX1-212ENST00000547394 TP53TG3Q9ULZ0 132 aa8.65□□□□□ -1.03
CUX1-212ENST00000547394 H3BRN7 92 aa8.64□□□□□ -1.03
CUX1-212ENST00000547394 HIST1H1EP10412 219 aaKnown RBP8.64□□□□□ -1.03
CUX1-212ENST00000547394 C5orf17Q8NAS9 161 aa8.64□□□□□ -1.03
CUX1-212ENST00000547394 ATG101Q9BSB4 218 aa8.64□□□□□ -1.03
CUX1-212ENST00000547394 OSTCQ9NRP0 149 aa8.64□□□□□ -1.03
CUX1-212ENST00000547394 TBL2Q9Y4P3 447 aaKnown RBP8.64□□□□□ -1.03
CUX1-212ENST00000547394 PRRC2AP48634 2157 aaKnown RBP8.64□□□□□ -1.03
CUX1-212ENST00000547394 MTORP42345 2549 aa8.64□□□□□ -1.03
CUX1-212ENST00000547394 TRBV19A0A075B6N1 114 aa8.64□□□□□ -1.03
CUX1-212ENST00000547394 HIGD1CA8MV81 97 aa8.64□□□□□ -1.03
CUX1-212ENST00000547394 ZNF705FA8MVS1 300 aaPredicted RBP8.64□□□□□ -1.03
CUX1-212ENST00000547394 TGOLN2O43493 480 aa8.64□□□□□ -1.03
CUX1-212ENST00000547394 PAX8Q06710 450 aa8.64□□□□□ -1.03
CUX1-212ENST00000547394 TMEM183BQ1AE95 376 aa8.64□□□□□ -1.03
CUX1-212ENST00000547394 GDF5OSQ5U4N7 250 aa8.64□□□□□ -1.03
CUX1-212ENST00000547394 BPIFA4PQ86YQ2 179 aa8.64□□□□□ -1.03
CUX1-212ENST00000547394 PIFOQ8TCI5 191 aa8.64□□□□□ -1.03
CUX1-212ENST00000547394 NEU1Q99519 415 aa8.64□□□□□ -1.03
CUX1-212ENST00000547394 HIF1ANQ9NWT6 349 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms