RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 KMT2CQ8NEZ4 4911 aaKnown RBP3.34□□□□□ -1.87
NUP54-206ENST00000508465 DNAH7Q8WXX0 4024 aa3.34□□□□□ -1.87
NUP54-206ENST00000508465 STAB2Q8WWQ8 2551 aa3.34□□□□□ -1.88
NUP54-206ENST00000508465 IGLV5-37A0A075B6J1 123 aa3.33□□□□□ -1.88
NUP54-206ENST00000508465 TRAV6A0A075B6T7 132 aa3.33□□□□□ -1.88
NUP54-206ENST00000508465 LOC102724200A0A096LPH7 203 aaPredicted RBP3.33□□□□□ -1.88
NUP54-206ENST00000508465 IGKV3D-20A0A0C4DH25 116 aa3.33□□□□□ -1.88
NUP54-206ENST00000508465 CENPXA8MT69 81 aa3.33□□□□□ -1.88
NUP54-206ENST00000508465 H3BP45 60 aa3.33□□□□□ -1.88
NUP54-206ENST00000508465 DNASE2O00115 360 aaPredicted RBP3.33□□□□□ -1.88
NUP54-206ENST00000508465 CORTO00230 105 aa3.33□□□□□ -1.88
NUP54-206ENST00000508465 NDUFB4O95168 129 aa3.33□□□□□ -1.88
NUP54-206ENST00000508465 OR4E1P0C645 316 aa3.33□□□□□ -1.88
NUP54-206ENST00000508465 IGLC1P0CG04 106 aa3.33□□□□□ -1.88
NUP54-206ENST00000508465 RD3LP0DJH9 198 aa3.33□□□□□ -1.88
NUP54-206ENST00000508465 BTCP35070 178 aa3.33□□□□□ -1.88
NUP54-206ENST00000508465 POLR2GP62487 172 aaKnown RBP eCLIP3.33□□□□□ -1.88
NUP54-206ENST00000508465 SRPXP78539 464 aa3.33□□□□□ -1.88
NUP54-206ENST00000508465 ZNF90Q03938 601 aa3.33□□□□□ -1.88
NUP54-206ENST00000508465 DHRS2Q13268 280 aa3.33□□□□□ -1.88
NUP54-206ENST00000508465 GAMTQ14353 236 aa3.33□□□□□ -1.88
NUP54-206ENST00000508465 CNPY1Q3B7I2 92 aa3.33□□□□□ -1.88
NUP54-206ENST00000508465 SPANXN5Q5MJ07 72 aa3.33□□□□□ -1.88
NUP54-206ENST00000508465 LEMD1Q68G75 181 aa3.33□□□□□ -1.88
NUP54-206ENST00000508465 SLC24A4Q8NFF2 622 aa3.33□□□□□ -1.88
NUP54-206ENST00000508465 STXBP6Q8NFX7 210 aa3.33□□□□□ -1.88
NUP54-206ENST00000508465 OR51G1Q8NGK1 321 aa3.33□□□□□ -1.88
NUP54-206ENST00000508465 MUC7Q8TAX7 377 aa3.33□□□□□ -1.88
NUP54-206ENST00000508465 RNASEH2CQ8TDP1 164 aaKnown RBP3.33□□□□□ -1.88
NUP54-206ENST00000508465 Q8WTZ3 238 aa3.33□□□□□ -1.88
NUP54-206ENST00000508465 TMEM18Q96B42 140 aa3.33□□□□□ -1.88
NUP54-206ENST00000508465 SPAG8Q99932 426 aaPredicted RBP3.33□□□□□ -1.88
NUP54-206ENST00000508465 OVOL2Q9BRP0 275 aa3.33□□□□□ -1.88
NUP54-206ENST00000508465 GINS3Q9BRX5 216 aa3.33□□□□□ -1.88
NUP54-206ENST00000508465 GGTLC1Q9BX51 225 aa3.33□□□□□ -1.88
NUP54-206ENST00000508465 MS4A6AQ9H2W1 248 aa3.33□□□□□ -1.88
NUP54-206ENST00000508465 GSKIPQ9P0R6 139 aa3.33□□□□□ -1.88
NUP54-206ENST00000508465 RABAC1Q9UI14 185 aa3.33□□□□□ -1.88
NUP54-206ENST00000508465 U3KQ87 197 aa3.33□□□□□ -1.88
NUP54-206ENST00000508465 IGKV1D-37A0A075B6S9 117 aa3.32□□□□□ -1.88
NUP54-206ENST00000508465 IGHV4-28A0A0C4DH34 117 aa3.32□□□□□ -1.88
NUP54-206ENST00000508465 NAP1L6A6NFF2 107 aa3.32□□□□□ -1.88
NUP54-206ENST00000508465 OR4C46A6NHA9 309 aa3.32□□□□□ -1.88
NUP54-206ENST00000508465 ZFP92A6NM28 416 aa3.32□□□□□ -1.88
NUP54-206ENST00000508465 KNCNA6PVL3 124 aa3.32□□□□□ -1.88
NUP54-206ENST00000508465 CCSO14618 274 aa3.32□□□□□ -1.88
NUP54-206ENST00000508465 LYRM1O43325 122 aa3.32□□□□□ -1.88
NUP54-206ENST00000508465 SYNGR2O43760 224 aa3.32□□□□□ -1.88
NUP54-206ENST00000508465 IFNA21P01568 189 aa3.32□□□□□ -1.88
NUP54-206ENST00000508465 TCRBP04435 133 aa3.32□□□□□ -1.88
NUP54-206ENST00000508465 SLC25A4P12235 298 aa3.32□□□□□ -1.88
NUP54-206ENST00000508465 CRYBB3P26998 211 aa3.32□□□□□ -1.88
NUP54-206ENST00000508465 GPX4P36969 197 aaPredicted RBP3.32□□□□□ -1.88
NUP54-206ENST00000508465 P2RY1P47900 373 aa3.32□□□□□ -1.88
NUP54-206ENST00000508465 DEFB131AP59861 70 aa3.32□□□□□ -1.88
NUP54-206ENST00000508465 DEFB1P60022 68 aa3.32□□□□□ -1.88
NUP54-206ENST00000508465 SNRPEP62304 92 aaKnown RBP3.32□□□□□ -1.88
NUP54-206ENST00000508465 PAFAH1B2P68402 229 aa3.32□□□□□ -1.88
NUP54-206ENST00000508465 EWSR1Q01844 656 aaKnown RBP eCLIP3.32□□□□□ -1.88
NUP54-206ENST00000508465 USF2Q15853 346 aaPredicted RBP3.32□□□□□ -1.88
NUP54-206ENST00000508465 CASC10Q5T4H9 136 aa3.32□□□□□ -1.88
NUP54-206ENST00000508465 TMEM182Q6ZP80 229 aaPredicted RBP3.32□□□□□ -1.88
NUP54-206ENST00000508465 LYG2Q86SG7 212 aa3.32□□□□□ -1.88
NUP54-206ENST00000508465 LRTM2Q8N967 370 aa3.32□□□□□ -1.88
NUP54-206ENST00000508465 OR1S2Q8NGQ3 325 aa3.32□□□□□ -1.88
NUP54-206ENST00000508465 METTL26Q96S19 204 aa3.32□□□□□ -1.88
NUP54-206ENST00000508465 SEC22CQ9BRL7 303 aa3.32□□□□□ -1.88
NUP54-206ENST00000508465 PBDC1Q9BVG4 233 aa3.32□□□□□ -1.88
NUP54-206ENST00000508465 VSIRQ9H7M9 311 aa3.32□□□□□ -1.88
NUP54-206ENST00000508465 EDA2RQ9HAV5 297 aa3.32□□□□□ -1.88
NUP54-206ENST00000508465 TMED3Q9Y3Q3 217 aa3.32□□□□□ -1.88
NUP54-206ENST00000508465 CSMD3Q7Z407 3707 aa3.31□□□□□ -1.88
NUP54-206ENST00000508465 RYR3Q15413 4870 aa3.31□□□□□ -1.88
NUP54-206ENST00000508465 IGKV1OR2-108A0A075B7D4 117 aa3.31□□□□□ -1.88
NUP54-206ENST00000508465 TRAV30A0A087WSZ9 112 aa3.31□□□□□ -1.88
NUP54-206ENST00000508465 FAM240BA0A1B0GVZ2 78 aa3.31□□□□□ -1.88
NUP54-206ENST00000508465 DUXBA0A1W2PPF3 345 aa3.31□□□□□ -1.88
NUP54-206ENST00000508465 A0A1W2PS18 150 aa3.31□□□□□ -1.88
NUP54-206ENST00000508465 FAM25EA8MYX2 175 aa3.31□□□□□ -1.88
NUP54-206ENST00000508465 PRAC2D3DTV9 90 aa3.31□□□□□ -1.88
NUP54-206ENST00000508465 C3orf84H3BNL1 204 aa3.31□□□□□ -1.88
NUP54-206ENST00000508465 K7EQG2 157 aa3.31□□□□□ -1.88
NUP54-206ENST00000508465 DEFB4AO15263 64 aa3.31□□□□□ -1.88
NUP54-206ENST00000508465 SSSCA1O60232 199 aa3.31□□□□□ -1.88
NUP54-206ENST00000508465 MED6O75586 246 aa3.31□□□□□ -1.88
NUP54-206ENST00000508465 CCNKO75909 580 aa3.31□□□□□ -1.88
NUP54-206ENST00000508465 IL4P05112 153 aa3.31□□□□□ -1.88
NUP54-206ENST00000508465 METTL15P1P0C7V9 234 aa3.31□□□□□ -1.88
NUP54-206ENST00000508465 ZNF688P0C7X2 276 aa3.31□□□□□ -1.88
NUP54-206ENST00000508465 SLC25A6P12236 298 aa3.31□□□□□ -1.88
NUP54-206ENST00000508465 GATA2P23769 480 aaPredicted RBP3.31□□□□□ -1.88
NUP54-206ENST00000508465 PAX9P55771 341 aa3.31□□□□□ -1.88
NUP54-206ENST00000508465 YPEL3P61236 119 aaPredicted RBP3.31□□□□□ -1.88
NUP54-206ENST00000508465 RRAS2P62070 204 aaPredicted RBP3.31□□□□□ -1.88
NUP54-206ENST00000508465 RAB11AP62491 216 aa3.31□□□□□ -1.88
NUP54-206ENST00000508465 IFITM3Q01628 133 aa3.31□□□□□ -1.88
NUP54-206ENST00000508465 IAH1Q2TAA2 248 aaPredicted RBP3.31□□□□□ -1.88
NUP54-206ENST00000508465 DEFB135Q30KP9 77 aa3.31□□□□□ -1.88
NUP54-206ENST00000508465 OR8G2PQ6IF36 304 aa3.31□□□□□ -1.88
NUP54-206ENST00000508465 SMIM29Q86T20 159 aa3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms