RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 HIGD1AQ9Y241 93 aa12.99□□□□□ -0.33
UPF3A-203ENST00000474056 KLK5Q9Y337 293 aaPredicted RBP12.99□□□□□ -0.33
UPF3A-203ENST00000474056 F6UB75 175 aa12.98□□□□□ -0.33
UPF3A-203ENST00000474056 UPK1BO75841 260 aa12.98□□□□□ -0.33
UPF3A-203ENST00000474056 FXYD7P58549 80 aa12.98□□□□□ -0.33
UPF3A-203ENST00000474056 RAP2BP61225 183 aa12.98□□□□□ -0.33
UPF3A-203ENST00000474056 IFITM3Q01628 133 aa12.98□□□□□ -0.33
UPF3A-203ENST00000474056 GPR82Q96P67 336 aa12.98□□□□□ -0.33
UPF3A-203ENST00000474056 UHRF2Q96PU4 802 aa12.98□□□□□ -0.33
UPF3A-203ENST00000474056 C1QTNF4Q9BXJ3 329 aa12.98□□□□□ -0.33
UPF3A-203ENST00000474056 MFFQ9GZY8 342 aa12.98□□□□□ -0.33
UPF3A-203ENST00000474056 ELOA3CA0A087WX78 387 aaPredicted RBP12.97□□□□□ -0.33
UPF3A-203ENST00000474056 HYPMO75409 117 aa12.97□□□□□ -0.33
UPF3A-203ENST00000474056 OR5G3P0C626 314 aa12.97□□□□□ -0.33
UPF3A-203ENST00000474056 S100A7P31151 101 aa12.97□□□□□ -0.33
UPF3A-203ENST00000474056 BCAP31P51572 246 aa12.97□□□□□ -0.33
UPF3A-203ENST00000474056 SAMD13Q5VXD3 122 aa12.97□□□□□ -0.33
UPF3A-203ENST00000474056 PATE2Q6UY27 113 aa12.97□□□□□ -0.33
UPF3A-203ENST00000474056 OR4B1Q8NGF8 309 aa12.97□□□□□ -0.33
UPF3A-203ENST00000474056 ENKURQ8TC29 256 aa12.97□□□□□ -0.33
UPF3A-203ENST00000474056 GGACTQ9BVM4 153 aa12.97□□□□□ -0.33
UPF3A-203ENST00000474056 KMT2AQ03164 3969 aa12.96□□□□□ -0.33
UPF3A-203ENST00000474056 FAM24AA6NFZ4 105 aa12.96□□□□□ -0.33
UPF3A-203ENST00000474056 AGPAT2O15120 278 aa12.96□□□□□ -0.33
UPF3A-203ENST00000474056 DEDDO75618 318 aa12.96□□□□□ -0.33
UPF3A-203ENST00000474056 CAV2P51636 162 aa12.96□□□□□ -0.33
UPF3A-203ENST00000474056 S100A10P60903 97 aa12.96□□□□□ -0.33
UPF3A-203ENST00000474056 IL15RAQ13261 267 aa12.96□□□□□ -0.33
UPF3A-203ENST00000474056 RAB32Q13637 225 aa12.96□□□□□ -0.33
UPF3A-203ENST00000474056 IGFL4Q6B9Z1 124 aa12.96□□□□□ -0.33
UPF3A-203ENST00000474056 ZNF709Q8N972 641 aa12.96□□□□□ -0.33
UPF3A-203ENST00000474056 ARL6Q9H0F7 186 aa12.96□□□□□ -0.33
UPF3A-203ENST00000474056 RPRMQ9NS64 109 aa12.96□□□□□ -0.33
UPF3A-203ENST00000474056 TRAV8-2A0A0B4J237 113 aa12.95□□□□□ -0.34
UPF3A-203ENST00000474056 A0A0J9YX75 114 aa12.95□□□□□ -0.34
UPF3A-203ENST00000474056 CST7O76096 145 aa12.95□□□□□ -0.34
UPF3A-203ENST00000474056 LY6G6CO95867 125 aa12.95□□□□□ -0.34
UPF3A-203ENST00000474056 FGL1Q08830 312 aa12.95□□□□□ -0.34
UPF3A-203ENST00000474056 FAM78BQ5VT40 261 aa12.95□□□□□ -0.34
UPF3A-203ENST00000474056 EBLN2Q6P2I7 272 aa12.95□□□□□ -0.34
UPF3A-203ENST00000474056 CLUHP3Q96NS8 147 aa12.95□□□□□ -0.34
UPF3A-203ENST00000474056 MGST2Q99735 147 aa12.95□□□□□ -0.34
UPF3A-203ENST00000474056 SLC35B3Q9H1N7 401 aa12.95□□□□□ -0.34
UPF3A-203ENST00000474056 ARV1Q9H2C2 271 aa12.95□□□□□ -0.34
UPF3A-203ENST00000474056 RPL7P18124 248 aaKnown RBP12.94□□□□□ -0.34
UPF3A-203ENST00000474056 SPATA31B1PQ5VZV4 182 aa12.94□□□□□ -0.34
UPF3A-203ENST00000474056 ZNF546Q86UE3 836 aa12.94□□□□□ -0.34
UPF3A-203ENST00000474056 RNF182Q8N6D2 247 aa12.94□□□□□ -0.34
UPF3A-203ENST00000474056 HRH4Q9H3N8 390 aa12.94□□□□□ -0.34
UPF3A-203ENST00000474056 CELA1Q9UNI1 258 aa12.94□□□□□ -0.34
UPF3A-203ENST00000474056 IGSF23A1L1A6 192 aa12.93□□□□□ -0.34
UPF3A-203ENST00000474056 GOSR2O14653 212 aa12.93□□□□□ -0.34
UPF3A-203ENST00000474056 PVALBP20472 110 aaPredicted RBP12.93□□□□□ -0.34
UPF3A-203ENST00000474056 PSG9Q00887 426 aa12.93□□□□□ -0.34
UPF3A-203ENST00000474056 ZNF705AQ6ZN79 300 aaPredicted RBP12.93□□□□□ -0.34
UPF3A-203ENST00000474056 NRARPQ7Z6K4 114 aa12.93□□□□□ -0.34
UPF3A-203ENST00000474056 LYRM2Q9NU23 88 aaPredicted RBP12.93□□□□□ -0.34
UPF3A-203ENST00000474056 A0A087X0K7 114 aa12.92□□□□□ -0.34
UPF3A-203ENST00000474056 MRPS12O15235 138 aaKnown RBP12.92□□□□□ -0.34
UPF3A-203ENST00000474056 SIX6O95475 246 aa12.92□□□□□ -0.34
UPF3A-203ENST00000474056 HLA-DMBP28068 263 aa12.92□□□□□ -0.34
UPF3A-203ENST00000474056 PXDC1Q5TGL8 231 aa12.92□□□□□ -0.34
UPF3A-203ENST00000474056 GPN1Q9HCN4 374 aaPredicted RBP12.92□□□□□ -0.34
UPF3A-203ENST00000474056 IGHV3OR16-12A0A075B7B8 117 aa12.91□□□□□ -0.34
UPF3A-203ENST00000474056 A8MTW9 85 aa12.91□□□□□ -0.34
UPF3A-203ENST00000474056 ZNF705FA8MVS1 300 aaPredicted RBP12.91□□□□□ -0.34
UPF3A-203ENST00000474056 ZNF705DP0CH99 300 aaPredicted RBP12.91□□□□□ -0.34
UPF3A-203ENST00000474056 ZNF705BP0CI00 300 aaPredicted RBP12.91□□□□□ -0.34
UPF3A-203ENST00000474056 SULT1A1P50225 295 aa12.91□□□□□ -0.34
UPF3A-203ENST00000474056 Q6ZTC4 211 aa12.91□□□□□ -0.34
UPF3A-203ENST00000474056 LINC00305Q7Z4B0 112 aa12.91□□□□□ -0.34
UPF3A-203ENST00000474056 S100A7AQ86SG5 101 aa12.91□□□□□ -0.34
UPF3A-203ENST00000474056 TMEM252Q8N6L7 170 aa12.91□□□□□ -0.34
UPF3A-203ENST00000474056 TMEM37Q8WXS4 190 aa12.91□□□□□ -0.34
UPF3A-203ENST00000474056 NEU1Q99519 415 aa12.91□□□□□ -0.34
UPF3A-203ENST00000474056 UQCC1Q9NVA1 299 aa12.91□□□□□ -0.34
UPF3A-203ENST00000474056 BIRC6Q9NR09 4857 aa12.9□□□□□ -0.34
UPF3A-203ENST00000474056 INMT-MINDY4F8WBC2 141 aa12.9□□□□□ -0.34
UPF3A-203ENST00000474056 CAMLGP49069 296 aa12.9□□□□□ -0.34
UPF3A-203ENST00000474056 VWC2Q2TAL6 325 aa12.9□□□□□ -0.34
UPF3A-203ENST00000474056 MORN5Q5VZ52 161 aa12.9□□□□□ -0.34
UPF3A-203ENST00000474056 MIC13Q5XKP0 118 aa12.9□□□□□ -0.34
UPF3A-203ENST00000474056 AMTNQ6UX39 209 aa12.9□□□□□ -0.34
UPF3A-203ENST00000474056 C2CD4CQ8TF44 421 aa12.9□□□□□ -0.34
UPF3A-203ENST00000474056 WDR83OSQ9Y284 106 aa12.9□□□□□ -0.34
UPF3A-203ENST00000474056 UBE2L5PA0A1B0GUS4 154 aa12.89□□□□□ -0.35
UPF3A-203ENST00000474056 C11orf94C9JXX5 98 aa12.89□□□□□ -0.35
UPF3A-203ENST00000474056 COX7A2P2O60397 106 aa12.89□□□□□ -0.35
UPF3A-203ENST00000474056 PRB4P10163 310 aaPredicted RBP12.89□□□□□ -0.35
UPF3A-203ENST00000474056 CXCL3P19876 107 aa12.89□□□□□ -0.35
UPF3A-203ENST00000474056 CNN1P51911 297 aaKnown RBP12.89□□□□□ -0.35
UPF3A-203ENST00000474056 ZNF767PQ75MW2 155 aa12.89□□□□□ -0.35
UPF3A-203ENST00000474056 STX12Q86Y82 276 aa12.89□□□□□ -0.35
UPF3A-203ENST00000474056 C1orf158Q8N1D5 194 aa12.89□□□□□ -0.35
UPF3A-203ENST00000474056 ZNF738Q8NE65 137 aa12.89□□□□□ -0.35
UPF3A-203ENST00000474056 PRAF2O60831 178 aa12.88□□□□□ -0.35
UPF3A-203ENST00000474056 SNRPCP09234 159 aaKnown RBP12.88□□□□□ -0.35
UPF3A-203ENST00000474056 S100A11P31949 105 aa12.88□□□□□ -0.35
UPF3A-203ENST00000474056 PRR20EP86478 221 aa12.88□□□□□ -0.35
UPF3A-203ENST00000474056 PRR20CP86479 221 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 127.4 ms