RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 WDR12Q9GZL7 423 aaKnown RBP5.08□□□□□ -1.6
VPS41-208ENST00000448833 MAGT1Q9H0U3 335 aa5.08□□□□□ -1.6
VPS41-208ENST00000448833 PRR13Q9NZ81 148 aa5.08□□□□□ -1.6
VPS41-208ENST00000448833 DOK5Q9P104 306 aa5.08□□□□□ -1.6
VPS41-208ENST00000448833 IGHV3OR16-12A0A075B7B8 117 aa5.07□□□□□ -1.6
VPS41-208ENST00000448833 A0A0J9YX75 114 aa5.07□□□□□ -1.6
VPS41-208ENST00000448833 CCDC160A6NGH7 325 aa5.07□□□□□ -1.6
VPS41-208ENST00000448833 FNDC10F2Z333 226 aa5.07□□□□□ -1.6
VPS41-208ENST00000448833 SOCS3O14543 225 aa5.07□□□□□ -1.6
VPS41-208ENST00000448833 IL5P05113 134 aa5.07□□□□□ -1.6
VPS41-208ENST00000448833 HOXB5P09067 269 aa5.07□□□□□ -1.6
VPS41-208ENST00000448833 IAPPP10997 89 aa5.07□□□□□ -1.6
VPS41-208ENST00000448833 RPL7P18124 248 aaKnown RBP5.07□□□□□ -1.6
VPS41-208ENST00000448833 ORM2P19652 201 aa5.07□□□□□ -1.6
VPS41-208ENST00000448833 EMP1P54849 157 aa5.07□□□□□ -1.6
VPS41-208ENST00000448833 FAM3BP58499 235 aaPredicted RBP5.07□□□□□ -1.6
VPS41-208ENST00000448833 LGALS9BQ3B8N2 356 aa5.07□□□□□ -1.6
VPS41-208ENST00000448833 PXDC1Q5TGL8 231 aa5.07□□□□□ -1.6
VPS41-208ENST00000448833 FAM78BQ5VT40 261 aa5.07□□□□□ -1.6
VPS41-208ENST00000448833 TMEM144Q7Z5S9 345 aa5.07□□□□□ -1.6
VPS41-208ENST00000448833 UBE2DNLQ8IWF7 75 aa5.07□□□□□ -1.6
VPS41-208ENST00000448833 TMEM256Q8N2U0 113 aa5.07□□□□□ -1.6
VPS41-208ENST00000448833 TRIM63Q969Q1 353 aa5.07□□□□□ -1.6
VPS41-208ENST00000448833 IGF2BP2-AS1Q96M15 143 aa5.07□□□□□ -1.6
VPS41-208ENST00000448833 SLC25A22Q9H936 323 aa5.07□□□□□ -1.6
VPS41-208ENST00000448833 NPVFQ9HCQ7 196 aa5.07□□□□□ -1.6
VPS41-208ENST00000448833 PPP1R14DQ9NXH3 145 aa5.07□□□□□ -1.6
VPS41-208ENST00000448833 DKK2Q9UBU2 259 aa5.07□□□□□ -1.6
VPS41-208ENST00000448833 CELA1Q9UNI1 258 aa5.07□□□□□ -1.6
VPS41-208ENST00000448833 IGKV1OR2-108A0A075B7D4 117 aa5.06□□□□□ -1.6
VPS41-208ENST00000448833 LOC102723971A0A1B0GUV8 181 aa5.06□□□□□ -1.6
VPS41-208ENST00000448833 A8MTW9 85 aa5.06□□□□□ -1.6
VPS41-208ENST00000448833 ZNF701M0R085 212 aaPredicted RBP5.06□□□□□ -1.6
VPS41-208ENST00000448833 HYPMO75409 117 aa5.06□□□□□ -1.6
VPS41-208ENST00000448833 SCGB1D2O95969 90 aa5.06□□□□□ -1.6
VPS41-208ENST00000448833 INSP01308 110 aa5.06□□□□□ -1.6
VPS41-208ENST00000448833 TAS2R30P59541 319 aa5.06□□□□□ -1.6
VPS41-208ENST00000448833 DAD1P61803 113 aa5.06□□□□□ -1.6
VPS41-208ENST00000448833 PPP1R1AQ13522 171 aa5.06□□□□□ -1.6
VPS41-208ENST00000448833 GDF5OSQ5U4N7 250 aa5.06□□□□□ -1.6
VPS41-208ENST00000448833 FAM222AQ5U5X8 452 aa5.06□□□□□ -1.6
VPS41-208ENST00000448833 TRIQKQ629K1 86 aa5.06□□□□□ -1.6
VPS41-208ENST00000448833 GSG1LQ6UXU4 331 aa5.06□□□□□ -1.6
VPS41-208ENST00000448833 ZNF709Q8N972 641 aa5.06□□□□□ -1.6
VPS41-208ENST00000448833 C15orf53Q8NAA6 179 aa5.06□□□□□ -1.6
VPS41-208ENST00000448833 OR10P1Q8NGE3 313 aa5.06□□□□□ -1.6
VPS41-208ENST00000448833 LRRC20Q8TCA0 184 aa5.06□□□□□ -1.6
VPS41-208ENST00000448833 SMIM8Q96KF7 97 aa5.06□□□□□ -1.6
VPS41-208ENST00000448833 SLC35B3Q9H1N7 401 aa5.06□□□□□ -1.6
VPS41-208ENST00000448833 PSENENQ9NZ42 101 aa5.06□□□□□ -1.6
VPS41-208ENST00000448833 MGAT4CQ9UBM8 478 aa5.06□□□□□ -1.6
VPS41-208ENST00000448833 HIGD1AQ9Y241 93 aa5.06□□□□□ -1.6
VPS41-208ENST00000448833 C9orf170A2RU37 121 aa5.05□□□□□ -1.6
VPS41-208ENST00000448833 SMCO3A2RU48 225 aa5.05□□□□□ -1.6
VPS41-208ENST00000448833 LYRM9A8MSI8 78 aa5.05□□□□□ -1.6
VPS41-208ENST00000448833 PRSS46E5RG02 174 aa5.05□□□□□ -1.6
VPS41-208ENST00000448833 NDUFB6O95139 128 aa5.05□□□□□ -1.6
VPS41-208ENST00000448833 TSPOP30536 169 aa5.05□□□□□ -1.6
VPS41-208ENST00000448833 FXYD7P58549 80 aa5.05□□□□□ -1.6
VPS41-208ENST00000448833 PLP1P60201 277 aa5.05□□□□□ -1.6
VPS41-208ENST00000448833 RAB31Q13636 194 aa5.05□□□□□ -1.6
VPS41-208ENST00000448833 CDPF1Q6NVV7 123 aa5.05□□□□□ -1.6
VPS41-208ENST00000448833 TEPPQ6URK8 271 aa5.05□□□□□ -1.6
VPS41-208ENST00000448833 CYP2G1PQ6ZSU1 146 aa5.05□□□□□ -1.6
VPS41-208ENST00000448833 ZNF767PQ75MW2 155 aa5.05□□□□□ -1.6
VPS41-208ENST00000448833 CCDC190Q86UF4 302 aa5.05□□□□□ -1.6
VPS41-208ENST00000448833 ARL6IP6Q8N6S5 226 aa5.05□□□□□ -1.6
VPS41-208ENST00000448833 GGACTQ9BVM4 153 aa5.05□□□□□ -1.6
VPS41-208ENST00000448833 KRTAP9-9Q9BYP9 154 aa5.05□□□□□ -1.6
VPS41-208ENST00000448833 KRTAP9-4Q9BYQ2 154 aa5.05□□□□□ -1.6
VPS41-208ENST00000448833 SLC25A39Q9BZJ4 359 aaPredicted RBP5.05□□□□□ -1.6
VPS41-208ENST00000448833 SLC25A32Q9H2D1 315 aa5.05□□□□□ -1.6
VPS41-208ENST00000448833 YTHDF2Q9Y5A9 579 aaKnown RBP5.05□□□□□ -1.6
VPS41-208ENST00000448833 V9GYH0 126 aa5.05□□□□□ -1.6
VPS41-208ENST00000448833 VPS13DQ5THJ4 4388 aa5.05□□□□□ -1.6
VPS41-208ENST00000448833 A0A087X0K7 114 aa5.04□□□□□ -1.6
VPS41-208ENST00000448833 KRTAP4-8A0A0G2JLE6 195 aa5.04□□□□□ -1.6
VPS41-208ENST00000448833 K7EPK0 472 aa5.04□□□□□ -1.6
VPS41-208ENST00000448833 GOSR2O14653 212 aa5.04□□□□□ -1.6
VPS41-208ENST00000448833 TSC22D2O75157 780 aa5.04□□□□□ -1.6
VPS41-208ENST00000448833 ADAP1O75689 374 aa5.04□□□□□ -1.6
VPS41-208ENST00000448833 OR5G3P0C626 314 aa5.04□□□□□ -1.6
VPS41-208ENST00000448833 OR4E1P0C645 316 aa5.04□□□□□ -1.6
VPS41-208ENST00000448833 HTN3P15516 51 aa5.04□□□□□ -1.6
VPS41-208ENST00000448833 CXCL2P19875 107 aa5.04□□□□□ -1.6
VPS41-208ENST00000448833 ANXA7P20073 488 aaKnown RBP5.04□□□□□ -1.6
VPS41-208ENST00000448833 CNN1P51911 297 aaKnown RBP5.04□□□□□ -1.6
VPS41-208ENST00000448833 POLR2GP62487 172 aaKnown RBP eCLIP5.04□□□□□ -1.6
VPS41-208ENST00000448833 RHOBP62745 196 aa5.04□□□□□ -1.6
VPS41-208ENST00000448833 DLK1P80370 383 aa5.04□□□□□ -1.6
VPS41-208ENST00000448833 FGL1Q08830 312 aa5.04□□□□□ -1.6
VPS41-208ENST00000448833 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa5.04□□□□□ -1.6
VPS41-208ENST00000448833 ZNF493Q6ZR52 646 aa5.04□□□□□ -1.6
VPS41-208ENST00000448833 ACOT7LQ6ZUV0 252 aa5.04□□□□□ -1.6
VPS41-208ENST00000448833 ZNF546Q86UE3 836 aa5.04□□□□□ -1.6
VPS41-208ENST00000448833 C1orf158Q8N1D5 194 aa5.04□□□□□ -1.6
VPS41-208ENST00000448833 ZNF738Q8NE65 137 aa5.04□□□□□ -1.6
VPS41-208ENST00000448833 C20orf144Q9BQM9 153 aa5.04□□□□□ -1.6
VPS41-208ENST00000448833 ATG101Q9BSB4 218 aa5.04□□□□□ -1.6
VPS41-208ENST00000448833 SHANK2-AS3Q9BTD1 123 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 84 ms