RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 TMEM252Q8N6L7 170 aa9.26□□□□□ -0.93
PRPF40A-203ENST00000448428 C16orf92Q96LL3 132 aa9.26□□□□□ -0.93
PRPF40A-203ENST00000448428 C20orf173Q96LM9 149 aa9.26□□□□□ -0.93
PRPF40A-203ENST00000448428 SAV1Q9H4B6 383 aaPredicted RBP9.26□□□□□ -0.93
PRPF40A-203ENST00000448428 LYRM2Q9NU23 88 aaPredicted RBP9.26□□□□□ -0.93
PRPF40A-203ENST00000448428 CSMD3Q7Z407 3707 aa9.26□□□□□ -0.93
PRPF40A-203ENST00000448428 CXorf65A6NEN9 183 aa9.25□□□□□ -0.93
PRPF40A-203ENST00000448428 IGKV3-20P01619 116 aa9.25□□□□□ -0.93
PRPF40A-203ENST00000448428 SULT1A1P50225 295 aa9.25□□□□□ -0.93
PRPF40A-203ENST00000448428 NUTF2P61970 127 aaKnown RBP9.25□□□□□ -0.93
PRPF40A-203ENST00000448428 PXDC1Q5TGL8 231 aa9.25□□□□□ -0.93
PRPF40A-203ENST00000448428 SAMD13Q5VXD3 122 aa9.25□□□□□ -0.93
PRPF40A-203ENST00000448428 ZNF546Q86UE3 836 aa9.25□□□□□ -0.93
PRPF40A-203ENST00000448428 Q8NAQ8 132 aa9.25□□□□□ -0.93
PRPF40A-203ENST00000448428 ARV1Q9H2C2 271 aa9.25□□□□□ -0.93
PRPF40A-203ENST00000448428 C11orf68Q9H3H3 251 aaKnown RBP9.25□□□□□ -0.93
PRPF40A-203ENST00000448428 XCL2Q9UBD3 114 aa9.25□□□□□ -0.93
PRPF40A-203ENST00000448428 X6R8D5 127 aa9.25□□□□□ -0.93
PRPF40A-203ENST00000448428 TRAV8-2A0A0B4J237 113 aa9.24□□□□□ -0.93
PRPF40A-203ENST00000448428 ZNF705EA8MWA4 302 aaPredicted RBP9.24□□□□□ -0.93
PRPF40A-203ENST00000448428 F6UB75 175 aa9.24□□□□□ -0.93
PRPF40A-203ENST00000448428 RBMY1A1P0DJD3 496 aaKnown RBP9.24□□□□□ -0.93
PRPF40A-203ENST00000448428 RBMY1CP0DJD4 496 aa9.24□□□□□ -0.93
PRPF40A-203ENST00000448428 RPL7P18124 248 aaKnown RBP9.24□□□□□ -0.93
PRPF40A-203ENST00000448428 S100A11P31949 105 aa9.24□□□□□ -0.93
PRPF40A-203ENST00000448428 FXYD7P58549 80 aa9.24□□□□□ -0.93
PRPF40A-203ENST00000448428 RBMY1FQ15415 496 aaKnown RBP9.24□□□□□ -0.93
PRPF40A-203ENST00000448428 VWC2Q2TAL6 325 aa9.24□□□□□ -0.93
PRPF40A-203ENST00000448428 IGFL4Q6B9Z1 124 aa9.24□□□□□ -0.93
PRPF40A-203ENST00000448428 OR4B1Q8NGF8 309 aa9.24□□□□□ -0.93
PRPF40A-203ENST00000448428 CLUHP3Q96NS8 147 aa9.24□□□□□ -0.93
PRPF40A-203ENST00000448428 C1QTNF4Q9BXJ3 329 aa9.24□□□□□ -0.93
PRPF40A-203ENST00000448428 NMES1Q9C002 83 aa9.24□□□□□ -0.93
PRPF40A-203ENST00000448428 RPRMQ9NS64 109 aa9.24□□□□□ -0.93
PRPF40A-203ENST00000448428 UQCC1Q9NVA1 299 aa9.24□□□□□ -0.93
PRPF40A-203ENST00000448428 WDR83OSQ9Y284 106 aa9.24□□□□□ -0.93
PRPF40A-203ENST00000448428 IGHV4-28A0A0C4DH34 117 aa9.23□□□□□ -0.93
PRPF40A-203ENST00000448428 A0A0J9YX75 114 aa9.23□□□□□ -0.93
PRPF40A-203ENST00000448428 CAMLGP49069 296 aa9.23□□□□□ -0.93
PRPF40A-203ENST00000448428 H2BFSP57053 126 aa9.23□□□□□ -0.93
PRPF40A-203ENST00000448428 NANOS2P60321 138 aaKnown RBP9.23□□□□□ -0.93
PRPF40A-203ENST00000448428 CYCSP99999 105 aaKnown RBP9.23□□□□□ -0.93
PRPF40A-203ENST00000448428 NHLH2Q02577 135 aa9.23□□□□□ -0.93
PRPF40A-203ENST00000448428 FGL1Q08830 312 aa9.23□□□□□ -0.93
PRPF40A-203ENST00000448428 RAB31Q13636 194 aa9.23□□□□□ -0.93
PRPF40A-203ENST00000448428 FAM78BQ5VT40 261 aa9.23□□□□□ -0.93
PRPF40A-203ENST00000448428 SPATA31B1PQ5VZV4 182 aa9.23□□□□□ -0.93
PRPF40A-203ENST00000448428 MIC13Q5XKP0 118 aa9.23□□□□□ -0.93
PRPF40A-203ENST00000448428 EBLN2Q6P2I7 272 aa9.23□□□□□ -0.93
PRPF40A-203ENST00000448428 CEMP1Q6PRD7 247 aaPredicted RBP9.23□□□□□ -0.93
PRPF40A-203ENST00000448428 LINC00305Q7Z4B0 112 aa9.23□□□□□ -0.93
PRPF40A-203ENST00000448428 S100A7AQ86SG5 101 aa9.23□□□□□ -0.93
PRPF40A-203ENST00000448428 STX12Q86Y82 276 aa9.23□□□□□ -0.93
PRPF40A-203ENST00000448428 RNF182Q8N6D2 247 aa9.23□□□□□ -0.93
PRPF40A-203ENST00000448428 C11orf45Q8TAV5 145 aa9.23□□□□□ -0.93
PRPF40A-203ENST00000448428 TMEM37Q8WXS4 190 aa9.23□□□□□ -0.93
PRPF40A-203ENST00000448428 STARD9Q9P2P6 4700 aa9.23□□□□□ -0.93
PRPF40A-203ENST00000448428 NUPR2A6NF83 97 aa9.22□□□□□ -0.93
PRPF40A-203ENST00000448428 H0YIZ8 118 aa9.22□□□□□ -0.93
PRPF40A-203ENST00000448428 MRPS12O15235 138 aaKnown RBP9.22□□□□□ -0.93
PRPF40A-203ENST00000448428 RLN2P04090 185 aa9.22□□□□□ -0.93
PRPF40A-203ENST00000448428 MIFP14174 115 aa9.22□□□□□ -0.93
PRPF40A-203ENST00000448428 HBG1P69891 147 aa9.22□□□□□ -0.93
PRPF40A-203ENST00000448428 HBG2P69892 147 aa9.22□□□□□ -0.93
PRPF40A-203ENST00000448428 PRR20EP86478 221 aa9.22□□□□□ -0.93
PRPF40A-203ENST00000448428 PRR20CP86479 221 aa9.22□□□□□ -0.93
PRPF40A-203ENST00000448428 PRR20DP86480 221 aa9.22□□□□□ -0.93
PRPF40A-203ENST00000448428 PRR20BP86481 221 aa9.22□□□□□ -0.93
PRPF40A-203ENST00000448428 PRR20AP86496 221 aa9.22□□□□□ -0.93
PRPF40A-203ENST00000448428 ATP6V1FQ16864 119 aa9.22□□□□□ -0.93
PRPF40A-203ENST00000448428 LRRC37A5PQ49AS3 106 aa9.22□□□□□ -0.93
PRPF40A-203ENST00000448428 C10orf113Q5VZT2 155 aa9.22□□□□□ -0.93
PRPF40A-203ENST00000448428 ZNF709Q8N972 641 aa9.22□□□□□ -0.93
PRPF40A-203ENST00000448428 SLC35B3Q9H1N7 401 aa9.22□□□□□ -0.93
PRPF40A-203ENST00000448428 DNAJC4Q9NNZ3 241 aa9.22□□□□□ -0.93
PRPF40A-203ENST00000448428 OR5AC2Q9NZP5 309 aa9.22□□□□□ -0.93
PRPF40A-203ENST00000448428 ELOA3CA0A087WX78 387 aaPredicted RBP9.21□□□□□ -0.94
PRPF40A-203ENST00000448428 A0A087X0K7 114 aa9.21□□□□□ -0.94
PRPF40A-203ENST00000448428 UBE2L5PA0A1B0GUS4 154 aa9.21□□□□□ -0.94
PRPF40A-203ENST00000448428 E5RGE8 158 aa9.21□□□□□ -0.94
PRPF40A-203ENST00000448428 SSNA1O43805 119 aa9.21□□□□□ -0.94
PRPF40A-203ENST00000448428 COX7A2P2O60397 106 aa9.21□□□□□ -0.94
PRPF40A-203ENST00000448428 RPL29P47914 159 aaKnown RBP9.21□□□□□ -0.94
PRPF40A-203ENST00000448428 PSG9Q00887 426 aa9.21□□□□□ -0.94
PRPF40A-203ENST00000448428 BAXQ07812 192 aa9.21□□□□□ -0.94
PRPF40A-203ENST00000448428 MORN5Q5VZ52 161 aa9.21□□□□□ -0.94
PRPF40A-203ENST00000448428 Q6ZRG5 221 aa9.21□□□□□ -0.94
PRPF40A-203ENST00000448428 PHLDA1Q8WV24 401 aaPredicted RBP9.21□□□□□ -0.94
PRPF40A-203ENST00000448428 RNF126Q9BV68 326 aa9.21□□□□□ -0.94
PRPF40A-203ENST00000448428 RNF24Q9Y225 148 aa9.21□□□□□ -0.94
PRPF40A-203ENST00000448428 A8MTW9 85 aa9.2□□□□□ -0.94
PRPF40A-203ENST00000448428 JTBO76095 146 aa9.2□□□□□ -0.94
PRPF40A-203ENST00000448428 SNRPCP09234 159 aaKnown RBP9.2□□□□□ -0.94
PRPF40A-203ENST00000448428 ZNF705DP0CH99 300 aaPredicted RBP9.2□□□□□ -0.94
PRPF40A-203ENST00000448428 ZNF705BP0CI00 300 aaPredicted RBP9.2□□□□□ -0.94
PRPF40A-203ENST00000448428 CXCL3P19876 107 aa9.2□□□□□ -0.94
PRPF40A-203ENST00000448428 FGF7P21781 194 aa9.2□□□□□ -0.94
PRPF40A-203ENST00000448428 HLA-DMBP28068 263 aa9.2□□□□□ -0.94
PRPF40A-203ENST00000448428 OPCMLQ14982 345 aa9.2□□□□□ -0.94
PRPF40A-203ENST00000448428 AMTNQ6UX39 209 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms