RNA–Protein interactions for RNA: ENST00000269318.9

CCDC40-201, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2 BASIC

Gene CCDC40, Length 1,970 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-201ENST00000269318 NHLRC2Q8NBF2 726 aa12.93□□□□□ -0.34
CCDC40-201ENST00000269318 MAPK1IP1LQ8NDC0 245 aa12.93□□□□□ -0.34
CCDC40-201ENST00000269318 OR4F17Q8NGA8 305 aa12.93□□□□□ -0.34
CCDC40-201ENST00000269318 BTF3L4Q96K17 158 aa12.93□□□□□ -0.34
CCDC40-201ENST00000269318 USP9YO00507 2555 aaPredicted RBP12.93□□□□□ -0.34
CCDC40-201ENST00000269318 RNF223E7ERA6 249 aa12.92□□□□□ -0.34
CCDC40-201ENST00000269318 C17orf77Q96MU5 243 aa12.92□□□□□ -0.34
CCDC40-201ENST00000269318 POLQO75417 2590 aa12.92□□□□□ -0.34
CCDC40-201ENST00000269318 CENPEQ02224 2701 aa12.92□□□□□ -0.34
CCDC40-201ENST00000269318 IGHG2P01859 326 aa12.92□□□□□ -0.34
CCDC40-201ENST00000269318 CLEC3BP05452 202 aa12.92□□□□□ -0.34
CCDC40-201ENST00000269318 MGST1P10620 155 aaKnown RBP12.92□□□□□ -0.34
CCDC40-201ENST00000269318 SIGLEC15Q6ZMC9 328 aa12.92□□□□□ -0.34
CCDC40-201ENST00000269318 EXOC3-AS1Q8N2X6 119 aa12.92□□□□□ -0.34
CCDC40-201ENST00000269318 TMEM190Q8WZ59 177 aa12.92□□□□□ -0.34
CCDC40-201ENST00000269318 MS4A10Q96PG2 267 aa12.92□□□□□ -0.34
CCDC40-201ENST00000269318 PTPN13Q12923 2485 aa12.92□□□□□ -0.34
CCDC40-201ENST00000269318 TRAV9-1A0A075B6T8 112 aa12.91□□□□□ -0.34
CCDC40-201ENST00000269318 ZNF320A2RRD8 509 aa12.91□□□□□ -0.34
CCDC40-201ENST00000269318 M0QZK8 103 aa12.91□□□□□ -0.34
CCDC40-201ENST00000269318 TGFAP01135 160 aa12.91□□□□□ -0.34
CCDC40-201ENST00000269318 S100A9P06702 114 aaKnown RBP12.91□□□□□ -0.34
CCDC40-201ENST00000269318 AKR1D1P51857 326 aa12.91□□□□□ -0.34
CCDC40-201ENST00000269318 UBE2G1P62253 170 aa12.91□□□□□ -0.34
CCDC40-201ENST00000269318 ACTL10Q5JWF8 245 aa12.91□□□□□ -0.34
CCDC40-201ENST00000269318 IBA57Q5T440 356 aaKnown RBP12.91□□□□□ -0.34
CCDC40-201ENST00000269318 EEF1AKMT3Q96AZ1 226 aa12.91□□□□□ -0.34
CCDC40-201ENST00000269318 SMIM12Q96EX1 92 aa12.91□□□□□ -0.34
CCDC40-201ENST00000269318 FMC1Q96HJ9 113 aa12.91□□□□□ -0.34
CCDC40-201ENST00000269318 ZFAND3Q9H8U3 227 aa12.91□□□□□ -0.34
CCDC40-201ENST00000269318 GAR1Q9NY12 217 aaKnown RBP12.91□□□□□ -0.34
CCDC40-201ENST00000269318 LINC00527Q9UJ94 153 aa12.91□□□□□ -0.34
CCDC40-201ENST00000269318 PITPNC1Q9UKF7 332 aa12.91□□□□□ -0.34
CCDC40-201ENST00000269318 RPH3ALQ9UNE2 315 aa12.91□□□□□ -0.34
CCDC40-201ENST00000269318 CHD6Q8TD26 2715 aa12.91□□□□□ -0.34
CCDC40-201ENST00000269318 TRBV7-1A0A0A6YYK4 115 aa12.9□□□□□ -0.34
CCDC40-201ENST00000269318 NDUFA6P56556 154 aa12.9□□□□□ -0.34
CCDC40-201ENST00000269318 RPL15P61313 204 aaKnown RBP12.9□□□□□ -0.34
CCDC40-201ENST00000269318 C9orf152Q5JTZ5 239 aa12.9□□□□□ -0.34
CCDC40-201ENST00000269318 TOMM20LQ6UXN7 152 aa12.9□□□□□ -0.34
CCDC40-201ENST00000269318 FAM231DQ6ZW35 169 aa12.9□□□□□ -0.34
CCDC40-201ENST00000269318 LYPD1Q8N2G4 141 aa12.9□□□□□ -0.34
CCDC40-201ENST00000269318 MLST8Q9BVC4 326 aa12.9□□□□□ -0.34
CCDC40-201ENST00000269318 RABAC1Q9UI14 185 aa12.9□□□□□ -0.34
CCDC40-201ENST00000269318 IGHV4-31P0DP07 118 aa12.9□□□□□ -0.34
CCDC40-201ENST00000269318 HOXA5P20719 270 aa12.9□□□□□ -0.34
CCDC40-201ENST00000269318 RPEL1Q2QD12 228 aa12.9□□□□□ -0.34
CCDC40-201ENST00000269318 Q5PR19 223 aa12.9□□□□□ -0.34
CCDC40-201ENST00000269318 CLEC19AQ6UXS0 136 aa12.9□□□□□ -0.34
CCDC40-201ENST00000269318 SGK494Q96LW2 274 aa12.9□□□□□ -0.34
CCDC40-201ENST00000269318 GPR82Q96P67 336 aa12.9□□□□□ -0.34
CCDC40-201ENST00000269318 FAM223BA6NKX1 122 aa12.89□□□□□ -0.35
CCDC40-201ENST00000269318 BMPR1BO00238 502 aa12.89□□□□□ -0.35
CCDC40-201ENST00000269318 BRI3O95415 125 aa12.89□□□□□ -0.35
CCDC40-201ENST00000269318 LTAP01374 205 aa12.89□□□□□ -0.35
CCDC40-201ENST00000269318 PPIFP30405 207 aaKnown RBP12.89□□□□□ -0.35
CCDC40-201ENST00000269318 BLCAPP62952 87 aa12.89□□□□□ -0.35
CCDC40-201ENST00000269318 FAM223AQ8IWN6 122 aa12.89□□□□□ -0.35
CCDC40-201ENST00000269318 LINC00518Q8N0U6 118 aa12.89□□□□□ -0.35
CCDC40-201ENST00000269318 ATP6V0BQ99437 205 aa12.89□□□□□ -0.35
CCDC40-201ENST00000269318 IGHV3-35A0A0C4DH35 117 aa12.89□□□□□ -0.35
CCDC40-201ENST00000269318 IGLV2-11P01706 119 aa12.89□□□□□ -0.35
CCDC40-201ENST00000269318 ATP5G2Q06055 141 aa12.89□□□□□ -0.35
CCDC40-201ENST00000269318 PDE6HQ13956 83 aa12.89□□□□□ -0.35
CCDC40-201ENST00000269318 DEFB112Q30KQ8 113 aa12.89□□□□□ -0.35
CCDC40-201ENST00000269318 FSHBP01225 129 aa12.88□□□□□ -0.35
CCDC40-201ENST00000269318 Q6ZS46 218 aa12.88□□□□□ -0.35
CCDC40-201ENST00000269318 KRTAP1-3Q8IUG1 177 aa12.88□□□□□ -0.35
CCDC40-201ENST00000269318 CMTM2Q8TAZ6 248 aa12.88□□□□□ -0.35
CCDC40-201ENST00000269318 RPL7P18124 248 aaKnown RBP12.87□□□□□ -0.35
CCDC40-201ENST00000269318 MBD6Q96DN6 1003 aa12.87□□□□□ -0.35
CCDC40-201ENST00000269318 CR1P17927 2039 aa12.87□□□□□ -0.35
CCDC40-201ENST00000269318 IGHV3OR16-8A0A075B7F1 116 aa12.87□□□□□ -0.35
CCDC40-201ENST00000269318 TRBV6-1A0A0K0K1D8 114 aa12.87□□□□□ -0.35
CCDC40-201ENST00000269318 SMIM27A0A1W2PRY6 76 aa12.87□□□□□ -0.35
CCDC40-201ENST00000269318 CLPSL1A2RUU4 121 aa12.87□□□□□ -0.35
CCDC40-201ENST00000269318 TRGV3P03979 118 aa12.87□□□□□ -0.35
CCDC40-201ENST00000269318 CDX1P47902 265 aaPredicted RBP12.87□□□□□ -0.35
CCDC40-201ENST00000269318 GOLT1AQ6ZVE7 132 aa12.87□□□□□ -0.35
CCDC40-201ENST00000269318 Q86TA4 180 aa12.87□□□□□ -0.35
CCDC40-201ENST00000269318 OR8I2Q8N0Y5 310 aa12.87□□□□□ -0.35
CCDC40-201ENST00000269318 NOL4LQ96MY1 436 aaPredicted RBP12.87□□□□□ -0.35
CCDC40-201ENST00000269318 TRAV8-1A0A0A6YYK1 113 aa12.86□□□□□ -0.35
CCDC40-201ENST00000269318 IFITM10A6NMD0 228 aa12.86□□□□□ -0.35
CCDC40-201ENST00000269318 ZNF705GA8MUZ8 300 aaPredicted RBP12.86□□□□□ -0.35
CCDC40-201ENST00000269318 H3BUA1 57 aa12.86□□□□□ -0.35
CCDC40-201ENST00000269318 PLA2G2AP14555 144 aa12.86□□□□□ -0.35
CCDC40-201ENST00000269318 NUDT10Q8NFP7 164 aa12.86□□□□□ -0.35
CCDC40-201ENST00000269318 NUDT11Q96G61 164 aa12.86□□□□□ -0.35
CCDC40-201ENST00000269318 GNB4Q9HAV0 340 aa12.86□□□□□ -0.35
CCDC40-201ENST00000269318 SMAD5-AS1Q9Y6J3 95 aa12.86□□□□□ -0.35
CCDC40-201ENST00000269318 TENM4Q6N022 2769 aa12.86□□□□□ -0.35
CCDC40-201ENST00000269318 IGHV4-59P01825 116 aa12.85□□□□□ -0.35
CCDC40-201ENST00000269318 S100A7P31151 101 aa12.85□□□□□ -0.35
CCDC40-201ENST00000269318 ABCA12Q86UK0 2595 aa12.85□□□□□ -0.35
CCDC40-201ENST00000269318 NAV2Q8IVL1 2488 aa12.85□□□□□ -0.35
CCDC40-201ENST00000269318 CA1P00915 261 aaPredicted RBP12.85□□□□□ -0.35
CCDC40-201ENST00000269318 IER3P46695 156 aa12.85□□□□□ -0.35
CCDC40-201ENST00000269318 PRR27Q6MZM9 219 aa12.85□□□□□ -0.35
CCDC40-201ENST00000269318 PRSS57Q6UWY2 283 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms