RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 FAM223BA6NKX1 122 aa11.6□□□□□ -0.55
CCDC47-201ENST00000225726 ABCA1O95477 2261 aa11.6□□□□□ -0.55
CCDC47-201ENST00000225726 TRGC2P03986 189 aa11.6□□□□□ -0.55
CCDC47-201ENST00000225726 FAM223AQ8IWN6 122 aa11.6□□□□□ -0.55
CCDC47-201ENST00000225726 PACRGQ96M98 296 aaPredicted RBP11.6□□□□□ -0.55
CCDC47-201ENST00000225726 SNHG12Q9BXW3 62 aa11.6□□□□□ -0.55
CCDC47-201ENST00000225726 CSMD2Q7Z408 3487 aa11.6□□□□□ -0.55
CCDC47-201ENST00000225726 APCP25054 2843 aa11.6□□□□□ -0.55
CCDC47-201ENST00000225726 TRBV7-1A0A0A6YYK4 115 aa11.59□□□□□ -0.55
CCDC47-201ENST00000225726 H3BUA1 57 aa11.59□□□□□ -0.55
CCDC47-201ENST00000225726 BRI3O95415 125 aa11.59□□□□□ -0.55
CCDC47-201ENST00000225726 SUMO1P63165 101 aaKnown RBP11.59□□□□□ -0.55
CCDC47-201ENST00000225726 LEMD1Q68G75 181 aa11.59□□□□□ -0.55
CCDC47-201ENST00000225726 MS4A10Q96PG2 267 aa11.59□□□□□ -0.55
CCDC47-201ENST00000225726 ABCA12Q86UK0 2595 aa11.59□□□□□ -0.55
CCDC47-201ENST00000225726 BLCAPP62952 87 aa11.59□□□□□ -0.55
CCDC47-201ENST00000225726 ATP5G2Q06055 141 aa11.59□□□□□ -0.55
CCDC47-201ENST00000225726 ATP6V0BQ99437 205 aa11.59□□□□□ -0.55
CCDC47-201ENST00000225726 CTDSP1Q9GZU7 261 aa11.59□□□□□ -0.55
CCDC47-201ENST00000225726 TMEM242Q9NWH2 141 aa11.59□□□□□ -0.55
CCDC47-201ENST00000225726 LINC00527Q9UJ94 153 aa11.59□□□□□ -0.55
CCDC47-201ENST00000225726 RPH3ALQ9UNE2 315 aa11.59□□□□□ -0.55
CCDC47-201ENST00000225726 Q6YL49 198 aa11.59□□□□□ -0.55
CCDC47-201ENST00000225726 RNASE8Q8TDE3 154 aaKnown RBP11.59□□□□□ -0.55
CCDC47-201ENST00000225726 CHRDL1Q9BU40 450 aa11.59□□□□□ -0.55
CCDC47-201ENST00000225726 ZNF580Q9UK33 172 aa11.59□□□□□ -0.55
CCDC47-201ENST00000225726 Q6ZVH6 145 aa11.58□□□□□ -0.56
CCDC47-201ENST00000225726 ZNF664Q8N3J9 261 aa11.58□□□□□ -0.56
CCDC47-201ENST00000225726 CCDC140Q96MF4 163 aa11.58□□□□□ -0.56
CCDC47-201ENST00000225726 FOXC2Q99958 501 aa11.58□□□□□ -0.56
CCDC47-201ENST00000225726 NBEAP1P0C6P0 100 aa11.58□□□□□ -0.56
CCDC47-201ENST00000225726 CRYBB3P26998 211 aa11.58□□□□□ -0.56
CCDC47-201ENST00000225726 GPR183P32249 361 aa11.58□□□□□ -0.56
CCDC47-201ENST00000225726 ADMP35318 185 aa11.58□□□□□ -0.56
CCDC47-201ENST00000225726 ZNF329Q86UD4 541 aa11.58□□□□□ -0.56
CCDC47-201ENST00000225726 VPS25Q9BRG1 176 aa11.58□□□□□ -0.56
CCDC47-201ENST00000225726 CD33P20138 364 aa11.58□□□□□ -0.56
CCDC47-201ENST00000225726 PPIFP30405 207 aaKnown RBP11.58□□□□□ -0.56
CCDC47-201ENST00000225726 CDX1P47902 265 aaPredicted RBP11.58□□□□□ -0.56
CCDC47-201ENST00000225726 LINC01551Q86U37 167 aa11.58□□□□□ -0.56
CCDC47-201ENST00000225726 C9JCJ5 164 aa11.57□□□□□ -0.56
CCDC47-201ENST00000225726 CIARTQ8N365 385 aaPredicted RBP11.57□□□□□ -0.56
CCDC47-201ENST00000225726 TEX29Q8N6K0 151 aa11.57□□□□□ -0.56
CCDC47-201ENST00000225726 BLNKQ8WV28 456 aa11.57□□□□□ -0.56
CCDC47-201ENST00000225726 YPEL4Q96NS1 127 aa11.57□□□□□ -0.56
CCDC47-201ENST00000225726 C2orf88Q9BSF0 95 aa11.57□□□□□ -0.56
CCDC47-201ENST00000225726 PPP1R14DQ9NXH3 145 aa11.57□□□□□ -0.56
CCDC47-201ENST00000225726 TGIF2-C20orf24A0A0A6YYL0 155 aa11.57□□□□□ -0.56
CCDC47-201ENST00000225726 TRGV3P03979 118 aa11.57□□□□□ -0.56
CCDC47-201ENST00000225726 CLEC3BP05452 202 aa11.57□□□□□ -0.56
CCDC47-201ENST00000225726 MYCNOSP40205 109 aa11.57□□□□□ -0.56
CCDC47-201ENST00000225726 LY96Q9Y6Y9 160 aa11.57□□□□□ -0.56
CCDC47-201ENST00000225726 HIST1H1EP10412 219 aaKnown RBP11.56□□□□□ -0.56
CCDC47-201ENST00000225726 Q6ZS46 218 aa11.56□□□□□ -0.56
CCDC47-201ENST00000225726 BPIFA4PQ86YQ2 179 aa11.56□□□□□ -0.56
CCDC47-201ENST00000225726 NOL4LQ96MY1 436 aaPredicted RBP11.56□□□□□ -0.56
CCDC47-201ENST00000225726 VPREB3Q9UKI3 123 aa11.56□□□□□ -0.56
CCDC47-201ENST00000225726 TRBV20OR9-2A0A075B6H5 130 aa11.56□□□□□ -0.56
CCDC47-201ENST00000225726 SCGB1D1O95968 90 aa11.56□□□□□ -0.56
CCDC47-201ENST00000225726 CLEC19AQ6UXS0 136 aa11.56□□□□□ -0.56
CCDC47-201ENST00000225726 SVEP1Q4LDE5 3571 aa11.56□□□□□ -0.56
CCDC47-201ENST00000225726 CLDN34H7C241 214 aa11.56□□□□□ -0.56
CCDC47-201ENST00000225726 HELTA6NFD8 242 aa11.55□□□□□ -0.56
CCDC47-201ENST00000225726 ZNF705FA8MVS1 300 aaPredicted RBP11.55□□□□□ -0.56
CCDC47-201ENST00000225726 SMAD7O15105 426 aaKnown RBP11.55□□□□□ -0.56
CCDC47-201ENST00000225726 ZNF705DP0CH99 300 aaPredicted RBP11.55□□□□□ -0.56
CCDC47-201ENST00000225726 ZNF705BP0CI00 300 aaPredicted RBP11.55□□□□□ -0.56
CCDC47-201ENST00000225726 HOXA5P20719 270 aa11.55□□□□□ -0.56
CCDC47-201ENST00000225726 ANAPC16Q96DE5 110 aa11.55□□□□□ -0.56
CCDC47-201ENST00000225726 ZNF414Q96IQ9 312 aa11.55□□□□□ -0.56
CCDC47-201ENST00000225726 RABAC1Q9UI14 185 aa11.55□□□□□ -0.56
CCDC47-201ENST00000225726 RANP62826 216 aaKnown RBP11.55□□□□□ -0.56
CCDC47-201ENST00000225726 OR4F17Q8NGA8 305 aa11.55□□□□□ -0.56
CCDC47-201ENST00000225726 BMPR1BO00238 502 aa11.55□□□□□ -0.56
CCDC47-201ENST00000225726 DLEU1O43261 78 aa11.55□□□□□ -0.56
CCDC47-201ENST00000225726 TPPP2P59282 170 aa11.55□□□□□ -0.56
CCDC47-201ENST00000225726 TMEM190Q8WZ59 177 aa11.55□□□□□ -0.56
CCDC47-201ENST00000225726 USMG5Q96IX5 58 aa11.55□□□□□ -0.56
CCDC47-201ENST00000225726 ZNF586Q9NXT0 402 aa11.55□□□□□ -0.56
CCDC47-201ENST00000225726 CFHR3Q02985 330 aa11.54□□□□□ -0.56
CCDC47-201ENST00000225726 GNB4Q9HAV0 340 aa11.54□□□□□ -0.56
CCDC47-201ENST00000225726 PEX7O00628 323 aa11.54□□□□□ -0.56
CCDC47-201ENST00000225726 MRPS12O15235 138 aaKnown RBP11.54□□□□□ -0.56
CCDC47-201ENST00000225726 CD99P14209 185 aa11.54□□□□□ -0.56
CCDC47-201ENST00000225726 TRAV34A0A0B4J273 112 aa11.54□□□□□ -0.56
CCDC47-201ENST00000225726 PGPEP1LA6NFU8 196 aa11.54□□□□□ -0.56
CCDC47-201ENST00000225726 IGLV1-40P01703 118 aa11.54□□□□□ -0.56
CCDC47-201ENST00000225726 FOLR2P14207 255 aa11.54□□□□□ -0.56
CCDC47-201ENST00000225726 TOMM20LQ6UXN7 152 aa11.54□□□□□ -0.56
CCDC47-201ENST00000225726 OCC1Q8TAD7 63 aa11.54□□□□□ -0.56
CCDC47-201ENST00000225726 Q9H3A6 140 aa11.54□□□□□ -0.56
CCDC47-201ENST00000225726 ZFAND3Q9H8U3 227 aa11.54□□□□□ -0.56
CCDC47-201ENST00000225726 OTORQ9NRC9 128 aa11.54□□□□□ -0.56
CCDC47-201ENST00000225726 PGPA6NDG6 321 aa11.53□□□□□ -0.56
CCDC47-201ENST00000225726 SLC25A5P05141 298 aaKnown RBP11.53□□□□□ -0.56
CCDC47-201ENST00000225726 IGLC2P0DOY2 106 aa11.53□□□□□ -0.56
CCDC47-201ENST00000225726 GNG4P50150 75 aa11.53□□□□□ -0.56
CCDC47-201ENST00000225726 ELOBQ15370 118 aa11.53□□□□□ -0.56
CCDC47-201ENST00000225726 EPDR1Q9UM22 224 aa11.53□□□□□ -0.56
CCDC47-201ENST00000225726 H7BYZ3 331 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 228 ms