RNA–Protein interactions for RNA: YDR486C

VPS60, Transcript of Protein involved in late endosome to vacuole transport, yeast

Gene VPS60, Length 690 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS60	YDR486C	BFA1	P47113	574 aa		11.15	□□□□□ -0.62
VPS60	YDR486C	YNL144C	P53907	740 aa		11.15	□□□□□ -0.62
VPS60	YDR486C	RPL22B	P56628	122 aa	Known RBP	11.15	□□□□□ -0.62
VPS60	YDR486C	FAP7	Q12055	197 aa	Predicted RBP	11.15	□□□□□ -0.62
VPS60	YDR486C	YML002W	P0CF17	737 aa		11.14	□□□□□ -0.63
VPS60	YDR486C	PLC1	P32383	869 aa		11.14	□□□□□ -0.63
VPS60	YDR486C	YBR225W	P38321	900 aa		11.14	□□□□□ -0.63
VPS60	YDR486C	RGD2	P43556	714 aa		11.14	□□□□□ -0.63
VPS60	YDR486C	RSM26	P47141	266 aa		11.14	□□□□□ -0.63
VPS60	YDR486C	HLJ1	P48353	224 aa		11.14	□□□□□ -0.63
VPS60	YDR486C	SND1	Q04007	877 aa		11.14	□□□□□ -0.63
VPS60	YDR486C	AAD4	Q07747	329 aa		11.14	□□□□□ -0.63
VPS60	YDR486C	TPO1	Q07824	586 aa		11.14	□□□□□ -0.63
VPS60	YDR486C	LCB4	Q12246	624 aa		11.14	□□□□□ -0.63
VPS60	YDR486C	PEP5	P12868	1029 aa		11.13	□□□□□ -0.63
VPS60	YDR486C	YIH1	P25637	258 aa		11.13	□□□□□ -0.63
VPS60	YDR486C	HSP78	P33416	811 aa		11.13	□□□□□ -0.63
VPS60	YDR486C	LTV1	P34078	463 aa		11.13	□□□□□ -0.63
VPS60	YDR486C	POP4	P38336	279 aa		11.13	□□□□□ -0.63
VPS60	YDR486C	RRT5	P43607	289 aa		11.13	□□□□□ -0.63
VPS60	YDR486C	PMT7	Q06644	662 aa		11.13	□□□□□ -0.63
VPS60	YDR486C	PUF2	Q12221	1075 aa	Known RBP RIP-Chip data	11.13	□□□□□ -0.63	not detected
VPS60	YDR486C	NDJ1	Q12366	352 aa		11.13	□□□□□ -0.63
VPS60	YDR486C	CDC24	P11433	854 aa	Predicted RBP	11.12	□□□□□ -0.63
VPS60	YDR486C	MET16	P18408	261 aa	Predicted RBP	11.12	□□□□□ -0.63
VPS60	YDR486C	RAD16	P31244	790 aa		11.12	□□□□□ -0.63
VPS60	YDR486C	SPP381	P38282	291 aa	Predicted RBP	11.12	□□□□□ -0.63
VPS60	YDR486C	FSH1	P38777	243 aa	Known RBP	11.12	□□□□□ -0.63
VPS60	YDR486C	AIM18	P38884	321 aa		11.12	□□□□□ -0.63
VPS60	YDR486C	PRM9	P39551	298 aa		11.12	□□□□□ -0.63
VPS60	YDR486C	RFX1	P48743	811 aa		11.12	□□□□□ -0.63
VPS60	YDR486C	ARA2	Q04212	335 aa		11.12	□□□□□ -0.63
VPS60	YDR486C	YDL073W	Q07454	984 aa		11.12	□□□□□ -0.63
VPS60	YDR486C	GCR1	P07261	785 aa		11.11	□□□□□ -0.63
VPS60	YDR486C	SPO16	P17122	198 aa		11.11	□□□□□ -0.63
VPS60	YDR486C	DUG2	P38149	878 aa		11.11	□□□□□ -0.63
VPS60	YDR486C	UTP8	P53276	713 aa	Known RBP	11.11	□□□□□ -0.63
VPS60	YDR486C	YLL056C	Q12177	298 aa		11.11	□□□□□ -0.63
VPS60	YDR486C	YKL068W-A	Q3E826	78 aa		11.11	□□□□□ -0.63
VPS60	YDR486C	CBF1	P17106	351 aa		11.1	□□□□□ -0.63
VPS60	YDR486C	MGT1	P26188	188 aa		11.1	□□□□□ -0.63
VPS60	YDR486C	AIM26	P32858	118 aa		11.1	□□□□□ -0.63
VPS60	YDR486C	SAF1	P38352	637 aa		11.1	□□□□□ -0.63
VPS60	YDR486C	DIA4	P38705	446 aa	Predicted RBP	11.1	□□□□□ -0.63
VPS60	YDR486C	SFB3	P38810	929 aa		11.1	□□□□□ -0.63
VPS60	YDR486C	LAM1	P38851	1228 aa		11.1	□□□□□ -0.63
VPS60	YDR486C	BTT1	P40314	149 aa	Predicted RBP	11.1	□□□□□ -0.63
VPS60	YDR486C	INA22	P40576	216 aa		11.1	□□□□□ -0.63
VPS60	YDR486C	NMA111	P53920	997 aa		11.1	□□□□□ -0.63
VPS60	YDR486C	YPQ1	Q12010	308 aa		11.1	□□□□□ -0.63
VPS60	YDR486C	SPE3	Q12074	293 aa	Known RBP	11.1	□□□□□ -0.63
VPS60	YDR486C	GPM3	Q12326	303 aa		11.1	□□□□□ -0.63
VPS60	YDR486C	RRD2	Q12461	358 aa		11.1	□□□□□ -0.63
VPS60	YDR486C	AVL9	Q12500	764 aa		11.1	□□□□□ -0.63
VPS60	YDR486C	SYN8	P31377	255 aa		11.09	□□□□□ -0.63
VPS60	YDR486C	MUD2	P36084	527 aa	Known RBP	11.09	□□□□□ -0.63
VPS60	YDR486C	ECM13	P38195	257 aa		11.09	□□□□□ -0.63
VPS60	YDR486C	BIT2	P38346	545 aa		11.09	□□□□□ -0.63
VPS60	YDR486C	NUP60	P39705	539 aa		11.09	□□□□□ -0.63
VPS60	YDR486C	STL1	P39932	569 aa		11.09	□□□□□ -0.63
VPS60	YDR486C	MNN11	P46985	422 aa	Known RBP	11.09	□□□□□ -0.63
VPS60	YDR486C	YJR039W	P47107	1121 aa		11.09	□□□□□ -0.63
VPS60	YDR486C	YGR127W	P53275	312 aa		11.09	□□□□□ -0.63
VPS60	YDR486C	PIR3	Q03180	325 aa		11.09	□□□□□ -0.63
VPS60	YDR486C	PNP1	Q05788	311 aa		11.09	□□□□□ -0.63
VPS60	YDR486C	PIG1	Q06216	648 aa		11.09	□□□□□ -0.63
VPS60	YDR486C	BSP1	Q06604	576 aa		11.09	□□□□□ -0.63
VPS60	YDR486C	CDC73	Q06697	393 aa		11.09	□□□□□ -0.63
VPS60	YDR486C	SVS1	Q12254	260 aa		11.09	□□□□□ -0.63
VPS60	YDR486C	LPX1	Q12405	387 aa	Known RBP	11.09	□□□□□ -0.63
VPS60	YDR486C	TPS2	P31688	896 aa	Known RBP	11.08	□□□□□ -0.64
VPS60	YDR486C	CKB2	P38930	258 aa		11.08	□□□□□ -0.64
VPS60	YDR486C	SAP1	P39955	897 aa	Known RBP	11.08	□□□□□ -0.64
VPS60	YDR486C	MND2	P40577	368 aa		11.08	□□□□□ -0.64
VPS60	YDR486C	CNN1	P43618	361 aa		11.08	□□□□□ -0.64
VPS60	YDR486C	COP1	P53622	1201 aa	Known RBP	11.08	□□□□□ -0.64
VPS60	YDR486C	VPS9	P54787	451 aa		11.08	□□□□□ -0.64
VPS60	YDR486C	EFG1	Q3E705	233 aa	Known RBP	11.08	□□□□□ -0.64
VPS60	YDR486C	HIS1	P00498	297 aa	Known RBP	11.07	□□□□□ -0.64
VPS60	YDR486C	RAD1	P06777	1100 aa		11.07	□□□□□ -0.64
VPS60	YDR486C	HMG2	P12684	1045 aa		11.07	□□□□□ -0.64
VPS60	YDR486C	ISF1	P32488	338 aa		11.07	□□□□□ -0.64
VPS60	YDR486C	ECM32	P32644	1121 aa	Known RBP	11.07	□□□□□ -0.64
VPS60	YDR486C	RAD5	P32849	1169 aa	Predicted RBP	11.07	□□□□□ -0.64
VPS60	YDR486C	EDC3	P39998	551 aa	Known RBP	11.07	□□□□□ -0.64
VPS60	YDR486C	MVP1	P40959	511 aa	Known RBP	11.07	□□□□□ -0.64
VPS60	YDR486C	SNG1	P46950	547 aa		11.07	□□□□□ -0.64
VPS60	YDR486C	RTT101	P47050	842 aa		11.07	□□□□□ -0.64
VPS60	YDR486C	PSP1	P50896	841 aa	Known RBP	11.07	□□□□□ -0.64
VPS60	YDR486C	CBC2	Q08920	208 aa	Known RBP RIP-Chip data	11.07	□□□□□ -0.64	not detected
VPS60	YDR486C	AI5_ALPHA	Q9ZZX1	630 aa		11.07	□□□□□ -0.64
VPS60	YDR486C	ENO2	P00925	437 aa	Known RBP	11.06	□□□□□ -0.64
VPS60	YDR486C	CMD1	P06787	147 aa	Known RBP	11.06	□□□□□ -0.64
VPS60	YDR486C	ADH4	P10127	382 aa		11.06	□□□□□ -0.64
VPS60	YDR486C	MTF1	P14908	341 aa	Known RBP	11.06	□□□□□ -0.64
VPS60	YDR486C	ADY2	P25613	283 aa		11.06	□□□□□ -0.64
VPS60	YDR486C	RPC37	P36121	282 aa		11.06	□□□□□ -0.64
VPS60	YDR486C	URA8	P38627	578 aa	Predicted RBP	11.06	□□□□□ -0.64
VPS60	YDR486C	OTU2	P38747	307 aa	Known RBP	11.06	□□□□□ -0.64
VPS60	YDR486C	PPE1	P38796	400 aa		11.06	□□□□□ -0.64

Retrieved 100 of 5,963 RNA–protein pairs in 73.9 ms