RNA–Protein interactions for RNA: YDL060W

TSR1, Transcript of Protein required for processing of 20S pre-rRNA in the cytoplasm, yeast

Gene TSR1, Length 2,367 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TSR1	YDL060W	ARA2	Q04212	335 aa		4.09	□□□□□ -1.75
TSR1	YDL060W	OMS1	Q06668	471 aa		4.09	□□□□□ -1.75
TSR1	YDL060W	NUR1	Q12066	484 aa		4.09	□□□□□ -1.75
TSR1	YDL060W	APM4	Q99186	491 aa		4.09	□□□□□ -1.75
TSR1	YDL060W	GDB1	Q06625	1536 aa		4.09	□□□□□ -1.75
TSR1	YDL060W	MDS3	P53094	1487 aa		4.09	□□□□□ -1.75
TSR1	YDL060W	YCL002C	P25565	263 aa		4.09	□□□□□ -1.76
TSR1	YDL060W	PAH1	P32567	862 aa		4.09	□□□□□ -1.76
TSR1	YDL060W	NOP4	P37838	685 aa	Known RBP	4.09	□□□□□ -1.76
TSR1	YDL060W	RPP1	P38786	293 aa		4.09	□□□□□ -1.76
TSR1	YDL060W	SAK1	P38990	1142 aa		4.09	□□□□□ -1.76
TSR1	YDL060W	GPD2	P41911	440 aa	Known RBP	4.09	□□□□□ -1.76
TSR1	YDL060W	RBG2	P53295	368 aa	Known RBP	4.09	□□□□□ -1.76
TSR1	YDL060W	YAP1802	P53309	568 aa		4.09	□□□□□ -1.76
TSR1	YDL060W	ARC35	P53731	342 aa	Known RBP	4.09	□□□□□ -1.76
TSR1	YDL060W	TDA9	Q04545	1251 aa		4.09	□□□□□ -1.76
TSR1	YDL060W	YOL073C	Q08232	322 aa		4.09	□□□□□ -1.76
TSR1	YDL060W	CTI6	Q08923	506 aa		4.09	□□□□□ -1.76
TSR1	YDL060W	ARO1	P08566	1588 aa	Known RBP	4.09	□□□□□ -1.76
TSR1	YDL060W	HSP82	P02829	709 aa	Known RBP	4.08	□□□□□ -1.76
TSR1	YDL060W	MET8	P15807	274 aa		4.08	□□□□□ -1.76
TSR1	YDL060W	BYE1	P36106	594 aa		4.08	□□□□□ -1.76
TSR1	YDL060W	HSL7	P38274	827 aa		4.08	□□□□□ -1.76
TSR1	YDL060W	PES4	P39684	611 aa		4.08	□□□□□ -1.76
TSR1	YDL060W	SPC72	P39723	622 aa		4.08	□□□□□ -1.76
TSR1	YDL060W	NOP16	P40007	231 aa	Known RBP	4.08	□□□□□ -1.76
TSR1	YDL060W	ALY2	P47029	1046 aa		4.08	□□□□□ -1.76
TSR1	YDL060W	YLR040C	Q07988	224 aa		4.08	□□□□□ -1.76
TSR1	YDL060W	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	4.08	□□□□□ -1.76	not detected
TSR1	YDL060W	CAF20	P12962	161 aa	Known RBP	4.07	□□□□□ -1.76
TSR1	YDL060W	PXA2	P34230	853 aa		4.07	□□□□□ -1.76
TSR1	YDL060W	YEL068C	P39977	110 aa		4.07	□□□□□ -1.76
TSR1	YDL060W	DPH1	P40487	425 aa	Known RBP	4.07	□□□□□ -1.76
TSR1	YDL060W	SMK1	P41808	388 aa		4.07	□□□□□ -1.76
TSR1	YDL060W	YGL082W	P53155	381 aa		4.07	□□□□□ -1.76
TSR1	YDL060W	YGR016W	P53209	190 aa		4.07	□□□□□ -1.76
TSR1	YDL060W	PRP3	Q03338	469 aa	Predicted RBP	4.07	□□□□□ -1.76
TSR1	YDL060W	YKU80	Q04437	629 aa		4.07	□□□□□ -1.76
TSR1	YDL060W	SCM3	Q12334	223 aa		4.07	□□□□□ -1.76
TSR1	YDL060W	HSH49	Q99181	213 aa	Predicted RBP	4.07	□□□□□ -1.76
TSR1	YDL060W	IQG1	Q12280	1495 aa		4.07	□□□□□ -1.76
TSR1	YDL060W	CYB2	P00175	591 aa		4.07	□□□□□ -1.76
TSR1	YDL060W	FUR1	P18562	216 aa	Known RBP	4.07	□□□□□ -1.76
TSR1	YDL060W	SEC65	P29478	273 aa		4.07	□□□□□ -1.76
TSR1	YDL060W	ANP1	P32629	500 aa		4.07	□□□□□ -1.76
TSR1	YDL060W	YIL092W	P40497	633 aa		4.07	□□□□□ -1.76
TSR1	YDL060W	RLP7	P40693	322 aa	Known RBP	4.07	□□□□□ -1.76
TSR1	YDL060W	FKH2	P41813	862 aa		4.07	□□□□□ -1.76
TSR1	YDL060W	MTR3	P48240	250 aa	Predicted RBP	4.07	□□□□□ -1.76
TSR1	YDL060W	RNR4	P49723	345 aa	Known RBP	4.07	□□□□□ -1.76
TSR1	YDL060W	TIM44	Q01852	431 aa		4.07	□□□□□ -1.76
TSR1	YDL060W	TAF11	Q04226	346 aa		4.07	□□□□□ -1.76
TSR1	YDL060W	YLR287C	Q05881	355 aa		4.07	□□□□□ -1.76
TSR1	YDL060W	YDL144C	Q07589	356 aa		4.07	□□□□□ -1.76
TSR1	YDL060W	RRG1	Q12167	365 aa	Predicted RBP	4.07	□□□□□ -1.76
TSR1	YDL060W	TY1B-H	O13535	1793 aa		4.07	□□□□□ -1.76
TSR1	YDL060W	TY1B-DR5	P0C2I2	1755 aa		4.07	□□□□□ -1.76
TSR1	YDL060W	TY1B-DR6	P0C2I3	1755 aa		4.07	□□□□□ -1.76
TSR1	YDL060W	TY1B-LR2	P0C2I5	1755 aa		4.07	□□□□□ -1.76
TSR1	YDL060W	TY1B-LR3	P0C2I6	1755 aa	Known RBP	4.07	□□□□□ -1.76
TSR1	YDL060W	TY1B-PR1	P0C2I9	1755 aa	Known RBP	4.07	□□□□□ -1.76
TSR1	YDL060W	TY1B-PR2	P0C2J0	1756 aa		4.07	□□□□□ -1.76
TSR1	YDL060W	TY1B-PR3	P0C2J1	1755 aa	Known RBP	4.07	□□□□□ -1.76
TSR1	YDL060W	TY1B-JR1	P47098	1755 aa		4.07	□□□□□ -1.76
TSR1	YDL060W	TY1B-ML2	Q03434	1755 aa	Known RBP	4.07	□□□□□ -1.76
TSR1	YDL060W	TY1B-ER1	Q03612	1755 aa		4.07	□□□□□ -1.76
TSR1	YDL060W	TY1B-ML1	Q04711	1755 aa	Known RBP	4.07	□□□□□ -1.76
TSR1	YDL060W	TY1B-GR2	Q12269	1755 aa		4.07	□□□□□ -1.76
TSR1	YDL060W	TY1B-OL	Q12273	1755 aa		4.07	□□□□□ -1.76
TSR1	YDL060W	TY1B-PL	Q12414	1755 aa	Known RBP	4.07	□□□□□ -1.76
TSR1	YDL060W	CDC25	P04821	1589 aa		4.07	□□□□□ -1.76
TSR1	YDL060W	DOP1	Q03921	1698 aa		4.07	□□□□□ -1.76
TSR1	YDL060W	SNF1	P06782	633 aa	Known RBP	4.06	□□□□□ -1.76
TSR1	YDL060W	ALG7	P07286	448 aa		4.06	□□□□□ -1.76
TSR1	YDL060W	NAT1	P12945	854 aa	Known RBP	4.06	□□□□□ -1.76
TSR1	YDL060W	CLB1	P24868	471 aa		4.06	□□□□□ -1.76
TSR1	YDL060W	SLC1	P33333	303 aa		4.06	□□□□□ -1.76
TSR1	YDL060W	APM3	P38153	483 aa		4.06	□□□□□ -1.76
TSR1	YDL060W	GDT1	P38301	280 aa	Predicted RBP	4.06	□□□□□ -1.76
TSR1	YDL060W	CIN4	P39110	191 aa		4.06	□□□□□ -1.76
TSR1	YDL060W	EAF5	P39995	279 aa		4.06	□□□□□ -1.76
TSR1	YDL060W	KAP123	P40069	1113 aa	Known RBP	4.06	□□□□□ -1.76
TSR1	YDL060W	MRPL19	P53875	158 aa		4.06	□□□□□ -1.76
TSR1	YDL060W	ASI2	P53895	289 aa		4.06	□□□□□ -1.76
TSR1	YDL060W	TIM10	P87108	93 aa		4.06	□□□□□ -1.76
TSR1	YDL060W	SLU7	Q02775	382 aa	Known RBP	4.06	□□□□□ -1.76
TSR1	YDL060W	TAH18	Q12181	623 aa		4.06	□□□□□ -1.76
TSR1	YDL060W	ROM2	P51862	1356 aa	Known RBP	4.06	□□□□□ -1.76
TSR1	YDL060W	SNF2	P22082	1703 aa		4.06	□□□□□ -1.76
TSR1	YDL060W	TUB3	P09734	445 aa	Known RBP	4.06	□□□□□ -1.76
TSR1	YDL060W	PHO3	P24031	467 aa		4.06	□□□□□ -1.76
TSR1	YDL060W	PGS1	P25578	521 aa		4.06	□□□□□ -1.76
TSR1	YDL060W	CDC60	P26637	1090 aa	Known RBP	4.06	□□□□□ -1.76
TSR1	YDL060W	CMK1	P27466	446 aa	Known RBP	4.06	□□□□□ -1.76
TSR1	YDL060W	RAD16	P31244	790 aa		4.06	□□□□□ -1.76
TSR1	YDL060W	XRS2	P33301	854 aa		4.06	□□□□□ -1.76
TSR1	YDL060W	YKR051W	P36142	418 aa		4.06	□□□□□ -1.76
TSR1	YDL060W	CHS7	P38843	316 aa		4.06	□□□□□ -1.76
TSR1	YDL060W	AXL2	P38928	823 aa		4.06	□□□□□ -1.76
TSR1	YDL060W	TPA1	P40032	644 aa	Known RBP	4.06	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 45.8 ms