RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 MECOMQ03112 1051 aa23.61■■□□□ 1.37
UPF1-212ENST00000601689 TTF1Q15361 905 aaPredicted RBP23.61■■□□□ 1.37
UPF1-212ENST00000601689 DCTPP1Q9H773 170 aa23.61■■□□□ 1.37
UPF1-212ENST00000601689 TLR7Q9NYK1 1049 aaKnown RBP23.61■■□□□ 1.37
UPF1-212ENST00000601689 ANGEL1Q9UNK9 670 aaKnown RBP23.61■■□□□ 1.37
UPF1-212ENST00000601689 BAG3O95817 575 aa23.6■■□□□ 1.37
UPF1-212ENST00000601689 MAP4K4O95819 1239 aaPredicted RBP23.6■■□□□ 1.37
UPF1-212ENST00000601689 PRKG1Q13976 671 aa23.6■■□□□ 1.37
UPF1-212ENST00000601689 NAA16Q6N069 864 aaPredicted RBP23.6■■□□□ 1.37
UPF1-212ENST00000601689 PI16Q6UXB8 463 aa23.6■■□□□ 1.37
UPF1-212ENST00000601689 TBC1D9Q6ZT07 1266 aa23.6■■□□□ 1.37
UPF1-212ENST00000601689 GPATCH3Q96I76 525 aa23.6■■□□□ 1.37
UPF1-212ENST00000601689 SUPT16HQ9Y5B9 1047 aaKnown RBP23.6■■□□□ 1.37
UPF1-212ENST00000601689 MROH7-TTC4A0A0A0MT08 1334 aa23.59■■□□□ 1.37
UPF1-212ENST00000601689 AKAP11Q9UKA4 1901 aa23.59■■□□□ 1.37
UPF1-212ENST00000601689 UNCXA6NJT0 531 aa23.59■■□□□ 1.37
UPF1-212ENST00000601689 ZAP70P43403 619 aa23.59■■□□□ 1.37
UPF1-212ENST00000601689 CDC42EP5Q6NZY7 148 aa23.59■■□□□ 1.37
UPF1-212ENST00000601689 TMED8Q6PL24 325 aaPredicted RBP23.59■■□□□ 1.37
UPF1-212ENST00000601689 GAKO14976 1311 aa23.59■■□□□ 1.37
UPF1-212ENST00000601689 UBE2Q2LH0YL09 131 aa23.58■■□□□ 1.37
UPF1-212ENST00000601689 MAP3K12Q12852 859 aa23.58■■□□□ 1.37
UPF1-212ENST00000601689 NBPF12Q5TAG4 269 aaPredicted RBP23.58■■□□□ 1.37
UPF1-212ENST00000601689 REM2Q8IYK8 340 aaPredicted RBP23.58■■□□□ 1.37
UPF1-212ENST00000601689 PPIL4Q8WUA2 492 aaKnown RBP eCLIP23.58■■□□□ 1.37
UPF1-212ENST00000601689 NSUN4Q96CB9 384 aaKnown RBP23.58■■□□□ 1.37
UPF1-212ENST00000601689 CYP2E1P05181 493 aaPredicted RBP23.57■■□□□ 1.36
UPF1-212ENST00000601689 PLCG2P16885 1265 aa23.57■■□□□ 1.36
UPF1-212ENST00000601689 BTDP43251 543 aa23.57■■□□□ 1.36
UPF1-212ENST00000601689 CACNB3P54284 484 aa23.57■■□□□ 1.36
UPF1-212ENST00000601689 DCAF15Q66K64 600 aa23.57■■□□□ 1.36
UPF1-212ENST00000601689 FAM151AQ8WW52 585 aa23.57■■□□□ 1.36
UPF1-212ENST00000601689 TMEM39BQ9GZU3 492 aa23.57■■□□□ 1.36
UPF1-212ENST00000601689 PCDHB15Q9Y5E8 787 aa23.57■■□□□ 1.36
UPF1-212ENST00000601689 AOX1Q06278 1338 aa23.57■■□□□ 1.36
UPF1-212ENST00000601689 GPR75-ASB3A0A0A6YYF3 556 aa23.56■■□□□ 1.36
UPF1-212ENST00000601689 IDH1O75874 414 aaKnown RBP23.56■■□□□ 1.36
UPF1-212ENST00000601689 HSPA1AP0DMV8 641 aaKnown RBP23.56■■□□□ 1.36
UPF1-212ENST00000601689 HSPA1BP0DMV9 641 aaKnown RBP23.56■■□□□ 1.36
UPF1-212ENST00000601689 MAP3K11Q16584 847 aa23.55■■□□□ 1.36
UPF1-212ENST00000601689 MOB2Q70IA6 237 aa23.55■■□□□ 1.36
UPF1-212ENST00000601689 CERS3Q8IU89 383 aa23.55■■□□□ 1.36
UPF1-212ENST00000601689 ANKRD13AQ8IZ07 590 aa23.55■■□□□ 1.36
UPF1-212ENST00000601689 SLC10A4Q96EP9 437 aa23.55■■□□□ 1.36
UPF1-212ENST00000601689 ENTPD3O75355 529 aa23.54■■□□□ 1.36
UPF1-212ENST00000601689 SLC10A3P09131 477 aa23.54■■□□□ 1.36
UPF1-212ENST00000601689 TCP10Q12799 353 aa23.54■■□□□ 1.36
UPF1-212ENST00000601689 ZSCAN29Q8IWY8 852 aaPredicted RBP23.54■■□□□ 1.36
UPF1-212ENST00000601689 GCC1Q96CN9 775 aa23.54■■□□□ 1.36
UPF1-212ENST00000601689 RPAP1Q9BWH6 1393 aaPredicted RBP23.53■■□□□ 1.36
UPF1-212ENST00000601689 AOC2O75106 756 aa23.53■■□□□ 1.36
UPF1-212ENST00000601689 DNAJC2Q99543 621 aaKnown RBP23.53■■□□□ 1.36
UPF1-212ENST00000601689 IDI2Q9BXS1 227 aa23.53■■□□□ 1.36
UPF1-212ENST00000601689 RWDD1Q9H446 243 aaPredicted RBP23.53■■□□□ 1.36
UPF1-212ENST00000601689 MAST2Q6P0Q8 1798 aa23.52■■□□□ 1.36
UPF1-212ENST00000601689 CA12O43570 354 aa23.52■■□□□ 1.36
UPF1-212ENST00000601689 ATP5JP18859 108 aa23.52■■□□□ 1.36
UPF1-212ENST00000601689 TEPSINQ96N21 525 aa23.52■■□□□ 1.36
UPF1-212ENST00000601689 CSADQ9Y600 493 aa23.52■■□□□ 1.36
UPF1-212ENST00000601689 SMARCA5O60264 1052 aaPredicted RBP23.51■■□□□ 1.35
UPF1-212ENST00000601689 USP2O75604 605 aaPredicted RBP23.51■■□□□ 1.35
UPF1-212ENST00000601689 HDAC1Q13547 482 aaPredicted RBP23.51■■□□□ 1.35
UPF1-212ENST00000601689 LDLRAD1Q5T700 205 aa23.51■■□□□ 1.35
UPF1-212ENST00000601689 RASAL3Q86YV0 1011 aa23.51■■□□□ 1.35
UPF1-212ENST00000601689 WBP1LQ9NX94 342 aa23.51■■□□□ 1.35
UPF1-212ENST00000601689 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.51■■□□□ 1.35
UPF1-212ENST00000601689 PCNTO95613 3336 aa23.5■■□□□ 1.35
UPF1-212ENST00000601689 CYP7A1P22680 504 aa23.5■■□□□ 1.35
UPF1-212ENST00000601689 RGS3P49796 1198 aa23.5■■□□□ 1.35
UPF1-212ENST00000601689 PICALMQ13492 652 aa23.5■■□□□ 1.35
UPF1-212ENST00000601689 ZNF341Q9BYN7 854 aa23.5■■□□□ 1.35
UPF1-212ENST00000601689 DDX24Q9GZR7 859 aaKnown RBP eCLIP23.5■■□□□ 1.352e-8■■■□□ 16.8
UPF1-212ENST00000601689 BOLA2Q9H3K6 86 aa23.5■■□□□ 1.35
UPF1-212ENST00000601689 PIH1D3Q9NQM4 214 aaKnown RBP23.5■■□□□ 1.35
UPF1-212ENST00000601689 ECHDC1Q9NTX5 307 aa23.5■■□□□ 1.35
UPF1-212ENST00000601689 AATFQ9NY61 560 aaKnown RBP eCLIP23.5■■□□□ 1.35
UPF1-212ENST00000601689 MYO5AQ9Y4I1 1855 aaKnown RBP23.49■■□□□ 1.35
UPF1-212ENST00000601689 FAM155AB1AL88 458 aaPredicted RBP23.49■■□□□ 1.35
UPF1-212ENST00000601689 NPM3O75607 178 aaKnown RBP23.49■■□□□ 1.35
UPF1-212ENST00000601689 MAP3K9P80192 1104 aa23.49■■□□□ 1.35
UPF1-212ENST00000601689 KIF23Q02241 960 aaPredicted RBP23.49■■□□□ 1.35
UPF1-212ENST00000601689 NFIAQ12857 509 aa23.49■■□□□ 1.35
UPF1-212ENST00000601689 TEX11Q8IYF3 940 aa23.49■■□□□ 1.35
UPF1-212ENST00000601689 MAGEB6Q8N7X4 407 aa23.49■■□□□ 1.35
UPF1-212ENST00000601689 GOLIM4O00461 696 aa23.48■■□□□ 1.35
UPF1-212ENST00000601689 ERC2O15083 957 aa23.48■■□□□ 1.35
UPF1-212ENST00000601689 CTCFP49711 727 aaPredicted RBP23.48■■□□□ 1.35
UPF1-212ENST00000601689 SREBF2Q12772 1141 aa23.48■■□□□ 1.35
UPF1-212ENST00000601689 PAG1Q9NWQ8 432 aa23.48■■□□□ 1.35
UPF1-212ENST00000601689 FAM198AQ9UFP1 575 aa23.48■■□□□ 1.35
UPF1-212ENST00000601689 THSD7BQ9C0I4 1608 aa23.48■■□□□ 1.35
UPF1-212ENST00000601689 PPP4CP60510 307 aa23.47■■□□□ 1.35
UPF1-212ENST00000601689 ANKRD45Q5TZF3 282 aa23.47■■□□□ 1.35
UPF1-212ENST00000601689 ZSCAN25Q6NSZ9 544 aa23.47■■□□□ 1.35
UPF1-212ENST00000601689 CSRNP1Q96S65 589 aa23.47■■□□□ 1.35
UPF1-212ENST00000601689 HAUS7Q99871 368 aa23.47■■□□□ 1.35
UPF1-212ENST00000601689 FZD1Q9UP38 647 aa23.47■■□□□ 1.35
UPF1-212ENST00000601689 NDUFB9Q9Y6M9 179 aa23.47■■□□□ 1.35
UPF1-212ENST00000601689 SSC5DA1L4H1 1573 aa23.46■■□□□ 1.35
UPF1-212ENST00000601689 ZBTB48P10074 688 aaPredicted RBP23.46■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms