RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 IRF6O14896 467 aa8.41□□□□□ -1.06
VPS53-213ENST00000572334 CIAO1O76071 339 aa8.41□□□□□ -1.06
VPS53-213ENST00000572334 SLC5A1P13866 664 aa8.41□□□□□ -1.06
VPS53-213ENST00000572334 PRDX5P30044 214 aa8.41□□□□□ -1.06
VPS53-213ENST00000572334 ADORA1P30542 326 aa8.41□□□□□ -1.06
VPS53-213ENST00000572334 PHKA1P46020 1223 aa8.41□□□□□ -1.06
VPS53-213ENST00000572334 TNNI2P48788 182 aa8.41□□□□□ -1.06
VPS53-213ENST00000572334 SP3Q02447 781 aa8.41□□□□□ -1.06
VPS53-213ENST00000572334 NFIAQ12857 509 aa8.41□□□□□ -1.06
VPS53-213ENST00000572334 MOGSQ13724 837 aa8.41□□□□□ -1.06
VPS53-213ENST00000572334 DIXDC1Q155Q3 683 aa8.41□□□□□ -1.06
VPS53-213ENST00000572334 CCL15Q16663 113 aa8.41□□□□□ -1.06
VPS53-213ENST00000572334 CDC42EP5Q6NZY7 148 aa8.41□□□□□ -1.06
VPS53-213ENST00000572334 ZKSCAN4Q969J2 545 aaPredicted RBP8.41□□□□□ -1.06
VPS53-213ENST00000572334 ARMC5Q96C12 935 aa8.41□□□□□ -1.06
VPS53-213ENST00000572334 OTUD5Q96G74 571 aa8.41□□□□□ -1.06
VPS53-213ENST00000572334 ERO1AQ96HE7 468 aa8.41□□□□□ -1.06
VPS53-213ENST00000572334 MEIS3Q99687 375 aa8.41□□□□□ -1.06
VPS53-213ENST00000572334 SIL1Q9H173 461 aa8.41□□□□□ -1.06
VPS53-213ENST00000572334 COPRSQ9NQ92 184 aa8.41□□□□□ -1.06
VPS53-213ENST00000572334 FAM198AQ9UFP1 575 aa8.41□□□□□ -1.06
VPS53-213ENST00000572334 ZNF112Q9UJU3 913 aa8.41□□□□□ -1.06
VPS53-213ENST00000572334 LRRFIP2Q9Y608 721 aaKnown RBP8.41□□□□□ -1.06
VPS53-213ENST00000572334 DOCK1Q14185 1865 aa8.4□□□□□ -1.06
VPS53-213ENST00000572334 SIPA1L1O43166 1804 aa8.4□□□□□ -1.06
VPS53-213ENST00000572334 ATAD5Q96QE3 1844 aa8.4□□□□□ -1.06
VPS53-213ENST00000572334 MAST3O60307 1309 aa8.4□□□□□ -1.06
VPS53-213ENST00000572334 SALL1Q9NSC2 1324 aa8.4□□□□□ -1.06
VPS53-213ENST00000572334 BTBD19C9JJ37 291 aa8.4□□□□□ -1.06
VPS53-213ENST00000572334 FRAT2O75474 233 aaPredicted RBP8.4□□□□□ -1.06
VPS53-213ENST00000572334 UBTFL1P0CB47 393 aaPredicted RBP8.4□□□□□ -1.06
VPS53-213ENST00000572334 CTGFP29279 349 aa8.4□□□□□ -1.06
VPS53-213ENST00000572334 INPP5BP32019 993 aa8.4□□□□□ -1.06
VPS53-213ENST00000572334 GTF2A2P52657 109 aa8.4□□□□□ -1.06
VPS53-213ENST00000572334 RARSP54136 660 aaKnown RBP8.4□□□□□ -1.06
VPS53-213ENST00000572334 PRPF38BQ5VTL8 546 aaKnown RBP8.4□□□□□ -1.06
VPS53-213ENST00000572334 OTUD7BQ6GQQ9 843 aa8.4□□□□□ -1.06
VPS53-213ENST00000572334 MIGA2Q7L4E1 593 aa8.4□□□□□ -1.06
VPS53-213ENST00000572334 ZFPM1Q8IX07 1006 aa8.4□□□□□ -1.06
VPS53-213ENST00000572334 WDR66Q8TBY9 1149 aa8.4□□□□□ -1.06
VPS53-213ENST00000572334 ZNF384Q8TF68 577 aa8.4□□□□□ -1.06
VPS53-213ENST00000572334 FAM151AQ8WW52 585 aa8.4□□□□□ -1.06
VPS53-213ENST00000572334 WRNIP1Q96S55 665 aa8.4□□□□□ -1.06
VPS53-213ENST00000572334 ARHGAP39Q9C0H5 1083 aa8.4□□□□□ -1.06
VPS53-213ENST00000572334 FBXO3Q9UK99 471 aa8.4□□□□□ -1.06
VPS53-213ENST00000572334 TNNQ9UQP3 1299 aa8.4□□□□□ -1.06
VPS53-213ENST00000572334 ADGRA2Q96PE1 1338 aa8.39□□□□□ -1.07
VPS53-213ENST00000572334 FOCADQ5VW36 1801 aa8.39□□□□□ -1.07
VPS53-213ENST00000572334 CT47B1P0C2W7 299 aaPredicted RBP8.39□□□□□ -1.07
VPS53-213ENST00000572334 SLURP2P0DP57 97 aa8.39□□□□□ -1.07
VPS53-213ENST00000572334 PPIL2Q13356 520 aa8.39□□□□□ -1.07
VPS53-213ENST00000572334 TAF1CQ15572 869 aaPredicted RBP8.39□□□□□ -1.07
VPS53-213ENST00000572334 ATP2B3Q16720 1220 aa8.39□□□□□ -1.07
VPS53-213ENST00000572334 INTS3Q68E01 1043 aaKnown RBP8.39□□□□□ -1.07
VPS53-213ENST00000572334 SH3BP5LQ7L8J4 393 aa8.39□□□□□ -1.07
VPS53-213ENST00000572334 ERO1BQ86YB8 467 aa8.39□□□□□ -1.07
VPS53-213ENST00000572334 ZNF333Q96JL9 665 aa8.39□□□□□ -1.07
VPS53-213ENST00000572334 EFCC1Q9HA90 598 aa8.39□□□□□ -1.07
VPS53-213ENST00000572334 CSADQ9Y600 493 aa8.39□□□□□ -1.07
VPS53-213ENST00000572334 GAKO14976 1311 aa8.38□□□□□ -1.07
VPS53-213ENST00000572334 PHF20L1A8MW92 1017 aa8.38□□□□□ -1.07
VPS53-213ENST00000572334 TLR2O60603 784 aa8.38□□□□□ -1.07
VPS53-213ENST00000572334 EN2P19622 333 aaPredicted RBP8.38□□□□□ -1.07
VPS53-213ENST00000572334 DSG3P32926 999 aa8.38□□□□□ -1.07
VPS53-213ENST00000572334 IL15P40933 162 aaPredicted RBP8.38□□□□□ -1.07
VPS53-213ENST00000572334 TIMM10P62072 90 aa8.38□□□□□ -1.07
VPS53-213ENST00000572334 PPATQ06203 517 aa8.38□□□□□ -1.07
VPS53-213ENST00000572334 TCP10Q12799 353 aa8.38□□□□□ -1.07
VPS53-213ENST00000572334 MTX1Q13505 466 aa8.38□□□□□ -1.07
VPS53-213ENST00000572334 RASGRF1Q13972 1273 aa8.38□□□□□ -1.07
VPS53-213ENST00000572334 NOL9Q5SY16 702 aaKnown RBP8.38□□□□□ -1.07
VPS53-213ENST00000572334 CCDC102BQ68D86 513 aa8.38□□□□□ -1.07
VPS53-213ENST00000572334 ZNF341Q9BYN7 854 aa8.38□□□□□ -1.07
VPS53-213ENST00000572334 ZFYVE28Q9HCC9 887 aa8.38□□□□□ -1.07
VPS53-213ENST00000572334 ZCCHC17Q9NP64 241 aaKnown RBP8.38□□□□□ -1.07
VPS53-213ENST00000572334 CEP126Q9P2H0 1117 aa8.38□□□□□ -1.07
VPS53-213ENST00000572334 KCNH4Q9UQ05 1017 aa8.38□□□□□ -1.07
VPS53-213ENST00000572334 PTCH2Q9Y6C5 1203 aa8.38□□□□□ -1.07
VPS53-213ENST00000572334 SZT2Q5T011 3432 aa8.38□□□□□ -1.07
VPS53-213ENST00000572334 CCER2I3L3R5 266 aa8.37□□□□□ -1.07
VPS53-213ENST00000572334 WDHD1O75717 1129 aaPredicted RBP8.37□□□□□ -1.07
VPS53-213ENST00000572334 LDHBP07195 334 aaKnown RBP8.37□□□□□ -1.07
VPS53-213ENST00000572334 CETPP11597 493 aa8.37□□□□□ -1.07
VPS53-213ENST00000572334 LACTBP83111 547 aaPredicted RBP8.37□□□□□ -1.07
VPS53-213ENST00000572334 MAP3K10Q02779 954 aa8.37□□□□□ -1.07
VPS53-213ENST00000572334 SNAPC2Q13487 334 aa8.37□□□□□ -1.07
VPS53-213ENST00000572334 DCAF15Q66K64 600 aa8.37□□□□□ -1.07
VPS53-213ENST00000572334 C17orf99Q6UX52 265 aa8.37□□□□□ -1.07
VPS53-213ENST00000572334 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.37□□□□□ -1.07
VPS53-213ENST00000572334 ARHGAP45Q92619 1136 aa8.37□□□□□ -1.07
VPS53-213ENST00000572334 IDI2Q9BXS1 227 aa8.37□□□□□ -1.07
VPS53-213ENST00000572334 API5Q9BZZ5 524 aaKnown RBP8.37□□□□□ -1.07
VPS53-213ENST00000572334 DDX4Q9NQI0 724 aaKnown RBP8.37□□□□□ -1.07
VPS53-213ENST00000572334 USP40Q9NVE5 1235 aa8.37□□□□□ -1.07
VPS53-213ENST00000572334 TMOD2Q9NZR1 351 aa8.37□□□□□ -1.07
VPS53-213ENST00000572334 DENND2AQ9ULE3 1009 aa8.37□□□□□ -1.07
VPS53-213ENST00000572334 TRIOBPQ9H2D6 2365 aa8.37□□□□□ -1.07
VPS53-213ENST00000572334 LOC285556D6RIA3 1793 aa8.37□□□□□ -1.07
VPS53-213ENST00000572334 PDS5AQ29RF7 1337 aaKnown RBP8.36□□□□□ -1.07
VPS53-213ENST00000572334 A0A1B0GUL7 405 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms