RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 CORO7P57737 925 aa15.34■□□□□ 0.05
CLK3-206ENST00000562078 SWT1Q5T5J6 900 aaKnown RBP15.34■□□□□ 0.05
CLK3-206ENST00000562078 VPS18Q9P253 973 aa15.34■□□□□ 0.05
CLK3-206ENST00000562078 COL5A3P25940 1745 aaPredicted RBP15.34■□□□□ 0.05
CLK3-206ENST00000562078 URI1O94763 535 aaPredicted RBP15.34■□□□□ 0.05
CLK3-206ENST00000562078 DBNDD2Q9BQY9 259 aa15.34■□□□□ 0.05
CLK3-206ENST00000562078 NDUFB9Q9Y6M9 179 aa15.34■□□□□ 0.05
CLK3-206ENST00000562078 EFCAB8A8MWE9 144 aa15.33■□□□□ 0.04
CLK3-206ENST00000562078 ITPK1Q13572 414 aa15.33■□□□□ 0.04
CLK3-206ENST00000562078 PRPF40BQ6NWY9 871 aaKnown RBP15.33■□□□□ 0.04
CLK3-206ENST00000562078 MMS22LQ6ZRQ5 1243 aa15.33■□□□□ 0.04
CLK3-206ENST00000562078 ARFGAP3Q9NP61 516 aa15.33■□□□□ 0.04
CLK3-206ENST00000562078 ATP5JP18859 108 aa15.33■□□□□ 0.04
CLK3-206ENST00000562078 MAP2K2P36507 400 aa15.33■□□□□ 0.04
CLK3-206ENST00000562078 ST3GAL1Q11201 340 aa15.33■□□□□ 0.04
CLK3-206ENST00000562078 NBPF11Q86T75 865 aa15.33■□□□□ 0.04
CLK3-206ENST00000562078 SPATA32Q96LK8 384 aa15.33■□□□□ 0.04
CLK3-206ENST00000562078 ISCA1Q9BUE6 129 aa15.33■□□□□ 0.04
CLK3-206ENST00000562078 PLEKHA4Q9H4M7 779 aa15.33■□□□□ 0.04
CLK3-206ENST00000562078 CCDC87Q9NVE4 849 aa15.33■□□□□ 0.04
CLK3-206ENST00000562078 MYH14Q7Z406 1995 aaKnown RBP15.32■□□□□ 0.04
CLK3-206ENST00000562078 ZNF831Q5JPB2 1677 aa15.32■□□□□ 0.04
CLK3-206ENST00000562078 CRKLP46109 303 aaKnown RBP15.32■□□□□ 0.04
CLK3-206ENST00000562078 ETF1P62495 437 aaKnown RBP15.32■□□□□ 0.04
CLK3-206ENST00000562078 ATG9AQ7Z3C6 839 aa15.32■□□□□ 0.04
CLK3-206ENST00000562078 BICD2Q8TD16 824 aa15.32■□□□□ 0.04
CLK3-206ENST00000562078 ZNF594Q96JF6 807 aaPredicted RBP15.32■□□□□ 0.04
CLK3-206ENST00000562078 BECN2A8MW95 431 aa15.32■□□□□ 0.04
CLK3-206ENST00000562078 IL6STP40189 918 aaPredicted RBP15.32■□□□□ 0.04
CLK3-206ENST00000562078 SATB1Q01826 763 aa15.32■□□□□ 0.04
CLK3-206ENST00000562078 TCIRG1Q13488 830 aa15.32■□□□□ 0.04
CLK3-206ENST00000562078 GNL2Q13823 731 aaKnown RBP15.32■□□□□ 0.04
CLK3-206ENST00000562078 ARMCX5Q6P1M9 558 aa15.32■□□□□ 0.04
CLK3-206ENST00000562078 NECAB1Q8N987 351 aa15.32■□□□□ 0.04
CLK3-206ENST00000562078 ANKRD20A12PQ8NF67 263 aa15.32■□□□□ 0.04
CLK3-206ENST00000562078 RBM8AQ9Y5S9 174 aaKnown RBP15.32■□□□□ 0.04
CLK3-206ENST00000562078 MED23Q9ULK4 1368 aa15.31■□□□□ 0.04
CLK3-206ENST00000562078 EP400Q96L91 3159 aa15.31■□□□□ 0.04
CLK3-206ENST00000562078 PSDA5PKW4 1024 aaPredicted RBP15.31■□□□□ 0.04
CLK3-206ENST00000562078 EGFL6Q8IUX8 553 aa15.31■□□□□ 0.04
CLK3-206ENST00000562078 RREB1Q92766 1687 aa15.31■□□□□ 0.04
CLK3-206ENST00000562078 MAP3K15Q6ZN16 1313 aa15.31■□□□□ 0.04
CLK3-206ENST00000562078 TPM1P09493 284 aa15.31■□□□□ 0.04
CLK3-206ENST00000562078 GSDMDP57764 484 aa15.31■□□□□ 0.04
CLK3-206ENST00000562078 ADCK5Q3MIX3 580 aa15.31■□□□□ 0.04
CLK3-206ENST00000562078 LARP1BQ659C4 914 aaKnown RBP15.31■□□□□ 0.04
CLK3-206ENST00000562078 KRT27Q7Z3Y8 459 aa15.31■□□□□ 0.04
CLK3-206ENST00000562078 DHX40Q8IX18 779 aaKnown RBP15.31■□□□□ 0.04
CLK3-206ENST00000562078 PGBD1Q96JS3 809 aa15.31■□□□□ 0.04
CLK3-206ENST00000562078 JAKMIP1Q96N16 626 aaKnown RBP15.31■□□□□ 0.04
CLK3-206ENST00000562078 PARD6BQ9BYG5 372 aa15.31■□□□□ 0.04
CLK3-206ENST00000562078 ZNF609O15014 1411 aa15.3■□□□□ 0.04
CLK3-206ENST00000562078 TDO2P48775 406 aa15.3■□□□□ 0.04
CLK3-206ENST00000562078 KCNQ4P56696 695 aa15.3■□□□□ 0.04
CLK3-206ENST00000562078 LRRC24Q50LG9 513 aa15.3■□□□□ 0.04
CLK3-206ENST00000562078 DZIP3Q86Y13 1208 aaKnown RBP15.3■□□□□ 0.04
CLK3-206ENST00000562078 LEO1Q8WVC0 666 aaPredicted RBP15.3■□□□□ 0.04
CLK3-206ENST00000562078 PDE11AQ9HCR9 933 aa15.3■□□□□ 0.04
CLK3-206ENST00000562078 MED4Q9NPJ6 270 aa15.3■□□□□ 0.04
CLK3-206ENST00000562078 PARP3Q9Y6F1 533 aa15.3■□□□□ 0.04
CLK3-206ENST00000562078 PHLPP2Q6ZVD8 1323 aa15.3■□□□□ 0.04
CLK3-206ENST00000562078 KIF1CO43896 1103 aaKnown RBP15.29■□□□□ 0.04
CLK3-206ENST00000562078 SMC2O95347 1197 aa15.29■□□□□ 0.04
CLK3-206ENST00000562078 CAVIN2O95810 425 aa15.29■□□□□ 0.04
CLK3-206ENST00000562078 NECTIN1Q15223 517 aa15.29■□□□□ 0.04
CLK3-206ENST00000562078 LRRFIP1Q32MZ4 808 aaKnown RBP15.29■□□□□ 0.04
CLK3-206ENST00000562078 TTLL5Q6EMB2 1281 aa15.29■□□□□ 0.04
CLK3-206ENST00000562078 INTS5Q6P9B9 1019 aaKnown RBP15.29■□□□□ 0.04
CLK3-206ENST00000562078 ZNF589Q86UQ0 364 aaPredicted RBP15.29■□□□□ 0.04
CLK3-206ENST00000562078 FBXW7Q969H0 707 aa15.29■□□□□ 0.04
CLK3-206ENST00000562078 NEUROD6Q96NK8 337 aa15.29■□□□□ 0.04
CLK3-206ENST00000562078 OSBPL5Q9H0X9 879 aaPredicted RBP15.29■□□□□ 0.04
CLK3-206ENST00000562078 TBC1D2BQ9UPU7 963 aa15.29■□□□□ 0.04
CLK3-206ENST00000562078 LAMA4Q16363 1823 aa15.29■□□□□ 0.04
CLK3-206ENST00000562078 LY75O60449 1722 aa15.29■□□□□ 0.04
CLK3-206ENST00000562078 N4BP1O75113 896 aaKnown RBP15.29■□□□□ 0.04
CLK3-206ENST00000562078 RPS6KA5O75582 802 aa15.29■□□□□ 0.04
CLK3-206ENST00000562078 IL15P40933 162 aaPredicted RBP15.29■□□□□ 0.04
CLK3-206ENST00000562078 LONRF2Q1L5Z9 754 aa15.29■□□□□ 0.04
CLK3-206ENST00000562078 TRIM65Q6PJ69 517 aa15.29■□□□□ 0.04
CLK3-206ENST00000562078 FAM89AQ96GI7 184 aa15.29■□□□□ 0.04
CLK3-206ENST00000562078 CEP89Q96ST8 783 aa15.29■□□□□ 0.04
CLK3-206ENST00000562078 SNRKQ9NRH2 765 aa15.29■□□□□ 0.04
CLK3-206ENST00000562078 MYH7P12883 1935 aa15.29■□□□□ 0.04
CLK3-206ENST00000562078 CCDC189A1A4V9 331 aa15.28■□□□□ 0.04
CLK3-206ENST00000562078 EYA2O00167 538 aa15.28■□□□□ 0.04
CLK3-206ENST00000562078 CPP00450 1065 aa15.28■□□□□ 0.04
CLK3-206ENST00000562078 CREB3L3Q68CJ9 461 aa15.28■□□□□ 0.04
CLK3-206ENST00000562078 GPR161Q8N6U8 529 aaKnown RBP15.28■□□□□ 0.04
CLK3-206ENST00000562078 MAP4K1Q92918 833 aa15.28■□□□□ 0.04
CLK3-206ENST00000562078 CCDC85AQ96PX6 553 aaPredicted RBP15.28■□□□□ 0.04
CLK3-206ENST00000562078 SRRTQ9BXP5 876 aaKnown RBP15.28■□□□□ 0.04
CLK3-206ENST00000562078 SCAND2PQ9GZW5 306 aaPredicted RBP15.28■□□□□ 0.04
CLK3-206ENST00000562078 CHGBP05060 677 aa15.28■□□□□ 0.04
CLK3-206ENST00000562078 GPTP24298 496 aa15.28■□□□□ 0.04
CLK3-206ENST00000562078 MCM6Q14566 821 aa15.28■□□□□ 0.04
CLK3-206ENST00000562078 LRRC31Q6UY01 552 aa15.28■□□□□ 0.04
CLK3-206ENST00000562078 DDX46Q7L014 1031 aaKnown RBP15.28■□□□□ 0.04
CLK3-206ENST00000562078 LINC00116Q8NCU8 138 aa15.28■□□□□ 0.04
CLK3-206ENST00000562078 FBXO41Q8TF61 875 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms