RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 UBE4AQ14139 1066 aa14.46□□□□□ -0.09
LDLR-212ENST00000560467 HABP4Q5JVS0 413 aaKnown RBP14.46□□□□□ -0.09
LDLR-212ENST00000560467 ERC1Q8IUD2 1116 aa14.46□□□□□ -0.09
LDLR-212ENST00000560467 IQSEC3Q9UPP2 1182 aaPredicted RBP14.46□□□□□ -0.09
LDLR-212ENST00000560467 A0A1B0GUL6 1792 aa14.45□□□□□ -0.1
LDLR-212ENST00000560467 CCL15-CCL14A0A0B4J2E2 113 aa14.45□□□□□ -0.1
LDLR-212ENST00000560467 RAB11FIP3O75154 756 aa14.45□□□□□ -0.1
LDLR-212ENST00000560467 CRKP46108 304 aa14.45□□□□□ -0.1
LDLR-212ENST00000560467 CACNB3P54284 484 aa14.45□□□□□ -0.1
LDLR-212ENST00000560467 CHAF1AQ13111 956 aaPredicted RBP14.45□□□□□ -0.1
LDLR-212ENST00000560467 CCL15Q16663 113 aa14.45□□□□□ -0.1
LDLR-212ENST00000560467 FAM43AQ8N2R8 423 aa14.45□□□□□ -0.1
LDLR-212ENST00000560467 SSH3Q8TE77 659 aa14.45□□□□□ -0.1
LDLR-212ENST00000560467 OTUD5Q96G74 571 aa14.45□□□□□ -0.1
LDLR-212ENST00000560467 KAZALD1Q96I82 304 aa14.45□□□□□ -0.1
LDLR-212ENST00000560467 DCTPP1Q9H773 170 aa14.45□□□□□ -0.1
LDLR-212ENST00000560467 PTCH2Q9Y6C5 1203 aa14.45□□□□□ -0.1
LDLR-212ENST00000560467 CENPFP49454 3210 aa14.45□□□□□ -0.1
LDLR-212ENST00000560467 BRCA2P51587 3418 aa14.44□□□□□ -0.1
LDLR-212ENST00000560467 MAP3K9P80192 1104 aa14.44□□□□□ -0.1
LDLR-212ENST00000560467 TAF1CQ15572 869 aaPredicted RBP14.44□□□□□ -0.1
LDLR-212ENST00000560467 ANKRD45Q5TZF3 282 aa14.44□□□□□ -0.1
LDLR-212ENST00000560467 SMC5Q8IY18 1101 aa14.44□□□□□ -0.1
LDLR-212ENST00000560467 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.44□□□□□ -0.1
LDLR-212ENST00000560467 ZNF333Q96JL9 665 aa14.44□□□□□ -0.1
LDLR-212ENST00000560467 GTF2A2P52657 109 aa14.43□□□□□ -0.1
LDLR-212ENST00000560467 FBXO33Q7Z6M2 555 aa14.43□□□□□ -0.1
LDLR-212ENST00000560467 SIRT2Q8IXJ6 389 aa14.43□□□□□ -0.1
LDLR-212ENST00000560467 ZFYVE28Q9HCC9 887 aa14.43□□□□□ -0.1
LDLR-212ENST00000560467 RIPOR2Q9Y4F9 1068 aa14.43□□□□□ -0.1
LDLR-212ENST00000560467 CSADQ9Y600 493 aa14.43□□□□□ -0.1
LDLR-212ENST00000560467 OTOFQ9HC10 1997 aa14.43□□□□□ -0.1
LDLR-212ENST00000560467 MYCP01106 439 aaPredicted RBP14.42□□□□□ -0.1
LDLR-212ENST00000560467 TNNI2P48788 182 aa14.42□□□□□ -0.1
LDLR-212ENST00000560467 POLA2Q14181 598 aa14.42□□□□□ -0.1
LDLR-212ENST00000560467 RABL6Q3YEC7 729 aaPredicted RBP14.42□□□□□ -0.1
LDLR-212ENST00000560467 LRRC24Q50LG9 513 aa14.42□□□□□ -0.1
LDLR-212ENST00000560467 LRRCC1Q9C099 1032 aa14.42□□□□□ -0.1
LDLR-212ENST00000560467 ARHGAP39Q9C0H5 1083 aa14.42□□□□□ -0.1
LDLR-212ENST00000560467 SNCAIPQ9Y6H5 919 aa14.42□□□□□ -0.1
LDLR-212ENST00000560467 MROH5Q6ZUA9 1318 aa14.41□□□□□ -0.1
LDLR-212ENST00000560467 ECM29Q5VYK3 1845 aa14.41□□□□□ -0.1
LDLR-212ENST00000560467 PNMA6EA0A0J9YXQ4 647 aa14.41□□□□□ -0.1
LDLR-212ENST00000560467 SPDYE5A6NIY4 337 aa14.41□□□□□ -0.1
LDLR-212ENST00000560467 APBB1O00213 710 aa14.41□□□□□ -0.1
LDLR-212ENST00000560467 NUCB1Q02818 461 aa14.41□□□□□ -0.1
LDLR-212ENST00000560467 SLC9C1Q4G0N8 1177 aa14.41□□□□□ -0.1
LDLR-212ENST00000560467 CHD1LQ86WJ1 897 aa14.41□□□□□ -0.1
LDLR-212ENST00000560467 VPS37DQ86XT2 251 aa14.41□□□□□ -0.1
LDLR-212ENST00000560467 WRNIP1Q96S55 665 aa14.41□□□□□ -0.1
LDLR-212ENST00000560467 TMEM106CQ9BVX2 250 aa14.41□□□□□ -0.1
LDLR-212ENST00000560467 LAMB1P07942 1786 aa14.4□□□□□ -0.1
LDLR-212ENST00000560467 METTL24Q5JXM2 366 aa14.4□□□□□ -0.1
LDLR-212ENST00000560467 VGLL2Q8N8G2 317 aa14.4□□□□□ -0.1
LDLR-212ENST00000560467 TEKT1Q969V4 418 aa14.4□□□□□ -0.1
LDLR-212ENST00000560467 KIF1BPQ96EK5 621 aa14.4□□□□□ -0.1
LDLR-212ENST00000560467 BCL11AQ9H165 835 aa14.4□□□□□ -0.1
LDLR-212ENST00000560467 FBXO3Q9UK99 471 aa14.4□□□□□ -0.1
LDLR-212ENST00000560467 BTBD19C9JJ37 291 aa14.39□□□□□ -0.11
LDLR-212ENST00000560467 FRAT2O75474 233 aaPredicted RBP14.39□□□□□ -0.11
LDLR-212ENST00000560467 ECM2O94769 699 aaPredicted RBP14.39□□□□□ -0.11
LDLR-212ENST00000560467 BCAMP50895 628 aa14.39□□□□□ -0.11
LDLR-212ENST00000560467 SLC4A8Q2Y0W8 1093 aa14.39□□□□□ -0.11
LDLR-212ENST00000560467 APOBEC3HQ6NTF7 200 aaKnown RBP14.39□□□□□ -0.11
LDLR-212ENST00000560467 CLASRPQ8N2M8 674 aaKnown RBP14.39□□□□□ -0.11
LDLR-212ENST00000560467 KLHDC4Q8TBB5 520 aa14.39□□□□□ -0.11
LDLR-212ENST00000560467 SH3TC2Q8TF17 1288 aa14.39□□□□□ -0.11
LDLR-212ENST00000560467 TBC1D22AQ8WUA7 517 aa14.39□□□□□ -0.11
LDLR-212ENST00000560467 ZKSCAN4Q969J2 545 aaPredicted RBP14.39□□□□□ -0.11
LDLR-212ENST00000560467 COPRSQ9NQ92 184 aa14.39□□□□□ -0.11
LDLR-212ENST00000560467 EXOC6BQ9Y2D4 811 aa14.39□□□□□ -0.11
LDLR-212ENST00000560467 NOP58Q9Y2X3 529 aaKnown RBP14.39□□□□□ -0.11
LDLR-212ENST00000560467 IRF6O14896 467 aa14.38□□□□□ -0.11
LDLR-212ENST00000560467 CETPP11597 493 aa14.38□□□□□ -0.11
LDLR-212ENST00000560467 IL15P40933 162 aaPredicted RBP14.38□□□□□ -0.11
LDLR-212ENST00000560467 LACTBP83111 547 aaPredicted RBP14.38□□□□□ -0.11
LDLR-212ENST00000560467 HDLBPQ00341 1268 aaKnown RBP14.38□□□□□ -0.11
LDLR-212ENST00000560467 ARHGEF6Q15052 776 aa14.38□□□□□ -0.11
LDLR-212ENST00000560467 CAVIN4Q5BKX8 364 aa14.38□□□□□ -0.11
LDLR-212ENST00000560467 ERO1BQ86YB8 467 aa14.38□□□□□ -0.11
LDLR-212ENST00000560467 GPATCH3Q96I76 525 aa14.38□□□□□ -0.11
LDLR-212ENST00000560467 ZDHHC15Q96MV8 337 aa14.38□□□□□ -0.11
LDLR-212ENST00000560467 TMOD2Q9NZR1 351 aa14.38□□□□□ -0.11
LDLR-212ENST00000560467 TLR2O60603 784 aa14.37□□□□□ -0.11
LDLR-212ENST00000560467 RGS3P49796 1198 aa14.37□□□□□ -0.11
LDLR-212ENST00000560467 FXR1P51114 621 aaKnown RBP eCLIP14.37□□□□□ -0.11
LDLR-212ENST00000560467 SNAPC2Q13487 334 aa14.37□□□□□ -0.11
LDLR-212ENST00000560467 NBPF11Q86T75 865 aa14.37□□□□□ -0.11
LDLR-212ENST00000560467 LNPKQ9C0E8 428 aa14.37□□□□□ -0.11
LDLR-212ENST00000560467 SIL1Q9H173 461 aa14.37□□□□□ -0.11
LDLR-212ENST00000560467 ARAP2Q8WZ64 1704 aa14.37□□□□□ -0.11
LDLR-212ENST00000560467 CEP290O15078 2479 aa14.37□□□□□ -0.11
LDLR-212ENST00000560467 CIAO1O76071 339 aa14.36□□□□□ -0.11
LDLR-212ENST00000560467 PDE8BO95263 885 aa14.36□□□□□ -0.11
LDLR-212ENST00000560467 IFIT2P09913 472 aaKnown RBP14.36□□□□□ -0.11
LDLR-212ENST00000560467 INPP5BP32019 993 aa14.36□□□□□ -0.11
LDLR-212ENST00000560467 PPIL2Q13356 520 aa14.36□□□□□ -0.11
LDLR-212ENST00000560467 MIGA2Q7L4E1 593 aa14.36□□□□□ -0.11
LDLR-212ENST00000560467 FAM83AQ86UY5 434 aa14.36□□□□□ -0.11
LDLR-212ENST00000560467 RHPN1Q8TCX5 695 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 245.4 ms