RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 BOLA2Q9H3K6 86 aa15.8■□□□□ 0.12
NEDD8-208ENST00000560427 RFX7Q2KHR2 1363 aa15.79■□□□□ 0.12
NEDD8-208ENST00000560427 GOLIM4O00461 696 aa15.79■□□□□ 0.12
NEDD8-208ENST00000560427 BAG3O95817 575 aa15.79■□□□□ 0.12
NEDD8-208ENST00000560427 BTDP43251 543 aa15.79■□□□□ 0.12
NEDD8-208ENST00000560427 CST9Q5W186 159 aa15.79■□□□□ 0.12
NEDD8-208ENST00000560427 CDC42EP5Q6NZY7 148 aa15.79■□□□□ 0.12
NEDD8-208ENST00000560427 CHD1LQ86WJ1 897 aa15.79■□□□□ 0.12
NEDD8-208ENST00000560427 NOL10Q9BSC4 688 aaKnown RBP15.79■□□□□ 0.12
NEDD8-208ENST00000560427 IDI2Q9BXS1 227 aa15.79■□□□□ 0.12
NEDD8-208ENST00000560427 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.79■□□□□ 0.12
NEDD8-208ENST00000560427 MYH2Q9UKX2 1941 aa15.78■□□□□ 0.12
NEDD8-208ENST00000560427 PAPPA2Q9BXP8 1791 aa15.78■□□□□ 0.12
NEDD8-208ENST00000560427 NPM3O75607 178 aaKnown RBP15.78■□□□□ 0.12
NEDD8-208ENST00000560427 PLCG2P16885 1265 aa15.78■□□□□ 0.12
NEDD8-208ENST00000560427 RASA3Q14644 834 aa15.78■□□□□ 0.12
NEDD8-208ENST00000560427 SUPT20HL1Q3ZLR7 823 aa15.78■□□□□ 0.12
NEDD8-208ENST00000560427 ANTXR1Q9H6X2 564 aa15.78■□□□□ 0.12
NEDD8-208ENST00000560427 GBA2Q9HCG7 927 aaPredicted RBP15.78■□□□□ 0.12
NEDD8-208ENST00000560427 STAP2Q9UGK3 403 aa15.78■□□□□ 0.12
NEDD8-208ENST00000560427 NDUFB9Q9Y6M9 179 aa15.78■□□□□ 0.12
NEDD8-208ENST00000560427 C2orf69Q8N8R5 385 aa15.77■□□□□ 0.12
NEDD8-208ENST00000560427 PI4K2BQ8TCG2 481 aa15.77■□□□□ 0.12
NEDD8-208ENST00000560427 HOOK2Q96ED9 719 aa15.77■□□□□ 0.12
NEDD8-208ENST00000560427 HHIPL1Q96JK4 782 aa15.77■□□□□ 0.12
NEDD8-208ENST00000560427 LNPKQ9C0E8 428 aa15.77■□□□□ 0.12
NEDD8-208ENST00000560427 ZNF408Q9H9D4 720 aa15.77■□□□□ 0.12
NEDD8-208ENST00000560427 USP40Q9NVE5 1235 aa15.77■□□□□ 0.12
NEDD8-208ENST00000560427 TLL2Q9Y6L7 1015 aa15.77■□□□□ 0.12
NEDD8-208ENST00000560427 CNTNAP1P78357 1384 aa15.76■□□□□ 0.11
NEDD8-208ENST00000560427 RASSF10A6NK89 507 aa15.76■□□□□ 0.11
NEDD8-208ENST00000560427 TCP10L2B9ZVM9 353 aa15.76■□□□□ 0.11
NEDD8-208ENST00000560427 ENTPD3O75355 529 aa15.76■□□□□ 0.11
NEDD8-208ENST00000560427 CYP7A1P22680 504 aa15.76■□□□□ 0.11
NEDD8-208ENST00000560427 RHBDL3P58872 404 aa15.76■□□□□ 0.11
NEDD8-208ENST00000560427 PPP4CP60510 307 aa15.76■□□□□ 0.11
NEDD8-208ENST00000560427 FMR1Q06787 632 aaKnown RBP eCLIP15.76■□□□□ 0.11
NEDD8-208ENST00000560427 LRRFIP1Q32MZ4 808 aaKnown RBP15.76■□□□□ 0.11
NEDD8-208ENST00000560427 ZSCAN25Q6NSZ9 544 aa15.76■□□□□ 0.11
NEDD8-208ENST00000560427 MAGEB6Q8N7X4 407 aa15.76■□□□□ 0.11
NEDD8-208ENST00000560427 OTUD7AQ8TE49 926 aaPredicted RBP15.76■□□□□ 0.11
NEDD8-208ENST00000560427 FAM151AQ8WW52 585 aa15.76■□□□□ 0.11
NEDD8-208ENST00000560427 ABT1Q9ULW3 272 aaKnown RBP15.76■□□□□ 0.11
NEDD8-208ENST00000560427 POLR2AP24928 1970 aaKnown RBP15.76■□□□□ 0.11
NEDD8-208ENST00000560427 COL2A1P02458 1487 aaPredicted RBP15.76■□□□□ 0.11
NEDD8-208ENST00000560427 PDE6AP16499 860 aa15.75■□□□□ 0.11
NEDD8-208ENST00000560427 PDE1AP54750 535 aa15.75■□□□□ 0.11
NEDD8-208ENST00000560427 SLC9C2Q5TAH2 1124 aa15.75■□□□□ 0.11
NEDD8-208ENST00000560427 B4GALNT3Q6L9W6 998 aa15.75■□□□□ 0.11
NEDD8-208ENST00000560427 SAPCD2Q86UD0 394 aa15.75■□□□□ 0.11
NEDD8-208ENST00000560427 KBTBD3Q8NAB2 608 aa15.75■□□□□ 0.11
NEDD8-208ENST00000560427 SCAF8Q9UPN6 1271 aaKnown RBP15.75■□□□□ 0.11
NEDD8-208ENST00000560427 SSC5DA1L4H1 1573 aa15.75■□□□□ 0.11
NEDD8-208ENST00000560427 UNCXA6NJT0 531 aa15.74■□□□□ 0.11
NEDD8-208ENST00000560427 PPP1R12BO60237 982 aaPredicted RBP15.74■□□□□ 0.11
NEDD8-208ENST00000560427 WDHD1O75717 1129 aaPredicted RBP15.74■□□□□ 0.11
NEDD8-208ENST00000560427 CACNB3P54284 484 aa15.74■□□□□ 0.11
NEDD8-208ENST00000560427 UBE3CQ15386 1083 aa15.74■□□□□ 0.11
NEDD8-208ENST00000560427 ERICH6BQ5W0A0 696 aa15.74■□□□□ 0.11
NEDD8-208ENST00000560427 TSHZ3Q63HK5 1081 aa15.74■□□□□ 0.11
NEDD8-208ENST00000560427 DLK2Q6UY11 383 aa15.74■□□□□ 0.11
NEDD8-208ENST00000560427 ARMC9Q7Z3E5 817 aa15.74■□□□□ 0.11
NEDD8-208ENST00000560427 ADGRA1Q86SQ6 560 aa15.74■□□□□ 0.11
NEDD8-208ENST00000560427 TICAM2Q86XR7 235 aa15.74■□□□□ 0.11
NEDD8-208ENST00000560427 EDC3Q96F86 508 aaKnown RBP15.74■□□□□ 0.11
NEDD8-208ENST00000560427 TEPSINQ96N21 525 aa15.74■□□□□ 0.11
NEDD8-208ENST00000560427 OSBPL3Q9H4L5 887 aa15.74■□□□□ 0.11
NEDD8-208ENST00000560427 AATFQ9NY61 560 aaKnown RBP eCLIP15.74■□□□□ 0.11
NEDD8-208ENST00000560427 ZFYP08048 801 aaPredicted RBP15.73■□□□□ 0.11
NEDD8-208ENST00000560427 ADD2P35612 726 aa15.73■□□□□ 0.11
NEDD8-208ENST00000560427 RGS3P49796 1198 aa15.73■□□□□ 0.11
NEDD8-208ENST00000560427 NFIAQ12857 509 aa15.73■□□□□ 0.11
NEDD8-208ENST00000560427 MAP3K11Q16584 847 aa15.73■□□□□ 0.11
NEDD8-208ENST00000560427 CENPQQ7L2Z9 268 aaPredicted RBP15.73■□□□□ 0.11
NEDD8-208ENST00000560427 TEX11Q8IYF3 940 aa15.73■□□□□ 0.11
NEDD8-208ENST00000560427 TMEM39BQ9GZU3 492 aa15.73■□□□□ 0.11
NEDD8-208ENST00000560427 FAM198AQ9UFP1 575 aa15.73■□□□□ 0.11
NEDD8-208ENST00000560427 ATRNL1Q5VV63 1379 aa15.73■□□□□ 0.11
NEDD8-208ENST00000560427 ZNF532Q9HCE3 1301 aa15.72■□□□□ 0.11
NEDD8-208ENST00000560427 TCRBV5S4A2TA0A5A2 114 aa15.72■□□□□ 0.11
NEDD8-208ENST00000560427 HUNKP57058 714 aa15.72■□□□□ 0.11
NEDD8-208ENST00000560427 NBPF12Q5TAG4 269 aaPredicted RBP15.72■□□□□ 0.11
NEDD8-208ENST00000560427 PRAMEF18Q5VWM3 479 aa15.72■□□□□ 0.11
NEDD8-208ENST00000560427 MYO5AQ9Y4I1 1855 aaKnown RBP15.71■□□□□ 0.11
NEDD8-208ENST00000560427 ECE1P42892 770 aa15.71■□□□□ 0.11
NEDD8-208ENST00000560427 IREB2P48200 963 aaKnown RBP15.71■□□□□ 0.11
NEDD8-208ENST00000560427 HTRA3P83110 453 aa15.71■□□□□ 0.11
NEDD8-208ENST00000560427 TCP10Q12799 353 aa15.71■□□□□ 0.11
NEDD8-208ENST00000560427 DEFB115Q30KQ5 88 aa15.71■□□□□ 0.11
NEDD8-208ENST00000560427 DCAF15Q66K64 600 aa15.71■□□□□ 0.11
NEDD8-208ENST00000560427 PLEKHM2Q8IWE5 1019 aa15.71■□□□□ 0.11
NEDD8-208ENST00000560427 SH3RF3Q8TEJ3 882 aaPredicted RBP15.71■□□□□ 0.11
NEDD8-208ENST00000560427 EVI5LQ96CN4 794 aa15.71■□□□□ 0.11
NEDD8-208ENST00000560427 KLRG1Q96E93 195 aa15.71■□□□□ 0.11
NEDD8-208ENST00000560427 RIOK1Q9BRS2 568 aaKnown RBP15.71■□□□□ 0.11
NEDD8-208ENST00000560427 MAGEB6P1A0A0J9YX57 407 aa15.7■□□□□ 0.1
NEDD8-208ENST00000560427 PICALMQ13492 652 aa15.7■□□□□ 0.1
NEDD8-208ENST00000560427 TTLL12Q14166 644 aaPredicted RBP15.7■□□□□ 0.1
NEDD8-208ENST00000560427 DNAJC5GQ8N7S2 189 aa15.7■□□□□ 0.1
NEDD8-208ENST00000560427 MIGA1Q8NAN2 632 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms