RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 SDR42E1Q8WUS8 393 aa24.97■■□□□ 1.59
VPS28-208ENST00000527797 CCDC88AQ3V6T2 1871 aa24.96■■□□□ 1.59
VPS28-208ENST00000527797 USP17L3A6NCW0 530 aa24.96■■□□□ 1.59
VPS28-208ENST00000527797 USP17L4A6NCW7 530 aa24.96■■□□□ 1.59
VPS28-208ENST00000527797 AK2P54819 239 aa24.96■■□□□ 1.59
VPS28-208ENST00000527797 PPP4CP60510 307 aa24.96■■□□□ 1.59
VPS28-208ENST00000527797 GIMAP6Q6P9H5 292 aa24.96■■□□□ 1.59
VPS28-208ENST00000527797 USP17L1Q7RTZ2 530 aa24.96■■□□□ 1.59
VPS28-208ENST00000527797 KCNQ5Q9NR82 932 aa24.96■■□□□ 1.59
VPS28-208ENST00000527797 ZNF277Q9NRM2 450 aaPredicted RBP24.96■■□□□ 1.59
VPS28-208ENST00000527797 BCS1LQ9Y276 419 aa24.96■■□□□ 1.59
VPS28-208ENST00000527797 HSP90AA1P07900 732 aaKnown RBP24.95■■□□□ 1.58
VPS28-208ENST00000527797 LARGE2Q8N3Y3 721 aa24.95■■□□□ 1.58
VPS28-208ENST00000527797 SPRYD3Q8NCJ5 442 aa24.95■■□□□ 1.58
VPS28-208ENST00000527797 ALDH8A1Q9H2A2 487 aaPredicted RBP24.95■■□□□ 1.58
VPS28-208ENST00000527797 GPR75-ASB3A0A0A6YYF3 556 aa24.94■■□□□ 1.58
VPS28-208ENST00000527797 NOL8Q76FK4 1167 aaKnown RBP24.94■■□□□ 1.58
VPS28-208ENST00000527797 MXD3Q9BW11 206 aa24.94■■□□□ 1.58
VPS28-208ENST00000527797 ATP8A2Q9NTI2 1148 aa24.94■■□□□ 1.58
VPS28-208ENST00000527797 TTF2Q9UNY4 1162 aaKnown RBP24.94■■□□□ 1.58
VPS28-208ENST00000527797 DACT2Q5SW24 774 aa24.94■■□□□ 1.58
VPS28-208ENST00000527797 DHX32Q7L7V1 743 aaKnown RBP24.94■■□□□ 1.58
VPS28-208ENST00000527797 GAKO14976 1311 aa24.93■■□□□ 1.58
VPS28-208ENST00000527797 CHD4Q14839 1912 aa24.93■■□□□ 1.58
VPS28-208ENST00000527797 F8W031 263 aaPredicted RBP24.93■■□□□ 1.58
VPS28-208ENST00000527797 BTDP43251 543 aa24.93■■□□□ 1.58
VPS28-208ENST00000527797 ANKRD1Q15327 319 aa24.93■■□□□ 1.58
VPS28-208ENST00000527797 NLGN2Q8NFZ4 835 aa24.93■■□□□ 1.58
VPS28-208ENST00000527797 NCOA7Q8NI08 942 aa24.93■■□□□ 1.58
VPS28-208ENST00000527797 TMX3Q96JJ7 454 aa24.93■■□□□ 1.58
VPS28-208ENST00000527797 TAOK3Q9H2K8 898 aa24.93■■□□□ 1.58
VPS28-208ENST00000527797 LIMCH1Q9UPQ0 1083 aa24.93■■□□□ 1.58
VPS28-208ENST00000527797 PLCG2P16885 1265 aa24.92■■□□□ 1.58
VPS28-208ENST00000527797 TRDNQ13061 729 aa24.92■■□□□ 1.58
VPS28-208ENST00000527797 NBPF3Q9H094 633 aa24.92■■□□□ 1.58
VPS28-208ENST00000527797 YDJCA8MPS7 323 aa24.91■■□□□ 1.58
VPS28-208ENST00000527797 IARSP41252 1262 aaKnown RBP24.91■■□□□ 1.58
VPS28-208ENST00000527797 COL9A3Q14050 684 aaPredicted RBP24.91■■□□□ 1.58
VPS28-208ENST00000527797 TBC1D10CQ8IV04 446 aa24.91■■□□□ 1.58
VPS28-208ENST00000527797 SH3RF3Q8TEJ3 882 aaPredicted RBP24.91■■□□□ 1.58
VPS28-208ENST00000527797 USP5P45974 858 aa24.9■■□□□ 1.58
VPS28-208ENST00000527797 RALYLQ86SE5 291 aaKnown RBP24.9■■□□□ 1.58
VPS28-208ENST00000527797 TCEANC2Q96MN5 208 aa24.9■■□□□ 1.58
VPS28-208ENST00000527797 SLKQ9H2G2 1235 aaPredicted RBP24.9■■□□□ 1.58
VPS28-208ENST00000527797 DCP1AQ9NPI6 582 aaPredicted RBP24.9■■□□□ 1.58
VPS28-208ENST00000527797 DAGLAQ9Y4D2 1042 aa24.9■■□□□ 1.58
VPS28-208ENST00000527797 EXOSC10Q01780 885 aaKnown RBP24.9■■□□□ 1.58
VPS28-208ENST00000527797 PPARAQ07869 468 aa24.9■■□□□ 1.58
VPS28-208ENST00000527797 NIM1KQ8IY84 436 aa24.9■■□□□ 1.58
VPS28-208ENST00000527797 ZSCAN31Q96LW9 406 aaPredicted RBP24.9■■□□□ 1.58
VPS28-208ENST00000527797 CTDSPL2Q05D32 466 aa24.89■■□□□ 1.57
VPS28-208ENST00000527797 HHIPL2Q6UWX4 724 aa24.89■■□□□ 1.57
VPS28-208ENST00000527797 MRIQ9BWK5 157 aa24.89■■□□□ 1.57
VPS28-208ENST00000527797 ANAPC4Q9UJX5 808 aa24.89■■□□□ 1.57
VPS28-208ENST00000527797 BRCA1P38398 1863 aaKnown RBP24.88■■□□□ 1.57
VPS28-208ENST00000527797 MINDY4BA8MYZ0 360 aa24.88■■□□□ 1.57
VPS28-208ENST00000527797 SCNN1DP51172 638 aa24.88■■□□□ 1.57
VPS28-208ENST00000527797 AKNAD1Q5T1N1 836 aa24.88■■□□□ 1.57
VPS28-208ENST00000527797 CTR9Q6PD62 1173 aa24.88■■□□□ 1.57
VPS28-208ENST00000527797 Q6ZUG5 572 aa24.88■■□□□ 1.57
VPS28-208ENST00000527797 TEKT1Q969V4 418 aa24.88■■□□□ 1.57
VPS28-208ENST00000527797 MCM5P33992 734 aa24.87■■□□□ 1.57
VPS28-208ENST00000527797 FGD1P98174 961 aa24.87■■□□□ 1.57
VPS28-208ENST00000527797 TOB2Q14106 344 aaPredicted RBP24.87■■□□□ 1.57
VPS28-208ENST00000527797 MFSD6Q6ZSS7 791 aa24.87■■□□□ 1.57
VPS28-208ENST00000527797 KIAA0825Q8IV33 1275 aa24.87■■□□□ 1.57
VPS28-208ENST00000527797 MB21D2Q8IYB1 491 aaPredicted RBP24.87■■□□□ 1.57
VPS28-208ENST00000527797 LARP6Q9BRS8 491 aaKnown RBP24.87■■□□□ 1.57
VPS28-208ENST00000527797 RNF41Q9H4P4 317 aaPredicted RBP24.87■■□□□ 1.57
VPS28-208ENST00000527797 CNNM2Q9H8M5 875 aa24.87■■□□□ 1.57
VPS28-208ENST00000527797 FOXD4L1Q9NU39 408 aa24.87■■□□□ 1.57
VPS28-208ENST00000527797 ARPP21Q9UBL0 812 aaPredicted RBP24.87■■□□□ 1.57
VPS28-208ENST00000527797 ZNRF3Q9ULT6 936 aa24.87■■□□□ 1.57
VPS28-208ENST00000527797 USP17L12C9JPN9 530 aa24.86■■□□□ 1.57
VPS28-208ENST00000527797 USP17L21D6R901 530 aa24.86■■□□□ 1.57
VPS28-208ENST00000527797 NFKBIEO00221 500 aa24.86■■□□□ 1.57
VPS28-208ENST00000527797 HDLBPQ00341 1268 aaKnown RBP24.86■■□□□ 1.57
VPS28-208ENST00000527797 CUL4AQ13619 759 aa24.86■■□□□ 1.57
VPS28-208ENST00000527797 TEX11Q8IYF3 940 aa24.86■■□□□ 1.57
VPS28-208ENST00000527797 STAG1Q8WVM7 1258 aa24.86■■□□□ 1.57
VPS28-208ENST00000527797 RHBDL3P58872 404 aa24.86■■□□□ 1.57
VPS28-208ENST00000527797 SBK1Q52WX2 424 aa24.86■■□□□ 1.57
VPS28-208ENST00000527797 TGFBRAP1Q8WUH2 860 aa24.86■■□□□ 1.57
VPS28-208ENST00000527797 KRT23Q9C075 422 aa24.86■■□□□ 1.57
VPS28-208ENST00000527797 FHDC1Q9C0D6 1143 aaPredicted RBP24.86■■□□□ 1.57
VPS28-208ENST00000527797 SH2B1Q9NRF2 756 aaPredicted RBP24.86■■□□□ 1.57
VPS28-208ENST00000527797 MYO3BQ8WXR4 1341 aa24.85■■□□□ 1.57
VPS28-208ENST00000527797 LTBP3Q9NS15 1303 aa24.85■■□□□ 1.57
VPS28-208ENST00000527797 CRKP46108 304 aa24.85■■□□□ 1.57
VPS28-208ENST00000527797 JDP2Q8WYK2 163 aa24.85■■□□□ 1.57
VPS28-208ENST00000527797 MCM9Q9NXL9 1143 aa24.85■■□□□ 1.57
VPS28-208ENST00000527797 MKRN1Q9UHC7 482 aaKnown RBP24.85■■□□□ 1.57
VPS28-208ENST00000527797 WDR19Q8NEZ3 1342 aa24.85■■□□□ 1.57
VPS28-208ENST00000527797 MYH2Q9UKX2 1941 aa24.85■■□□□ 1.57
VPS28-208ENST00000527797 PRC1O43663 620 aa24.84■■□□□ 1.57
VPS28-208ENST00000527797 RAD17O75943 681 aa24.84■■□□□ 1.57
VPS28-208ENST00000527797 LRRC2Q9BYS8 371 aa24.84■■□□□ 1.57
VPS28-208ENST00000527797 TPCN1Q9ULQ1 816 aa24.84■■□□□ 1.57
VPS28-208ENST00000527797 NEDD4P46934 1319 aa24.84■■□□□ 1.57
VPS28-208ENST00000527797 VIL1P09327 827 aaKnown RBP24.83■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms