RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 APOBEC3HQ6NTF7 200 aaKnown RBP14.38□□□□□ -0.11
CUX1-210ENST00000497815 MTMR14Q8NCE2 650 aa14.38□□□□□ -0.11
CUX1-210ENST00000497815 NOL10Q9BSC4 688 aaKnown RBP14.38□□□□□ -0.11
CUX1-210ENST00000497815 MRIQ9BWK5 157 aa14.38□□□□□ -0.11
CUX1-210ENST00000497815 AATFQ9NY61 560 aaKnown RBP eCLIP14.38□□□□□ -0.111e-6■■■■■ 27.8
CUX1-210ENST00000497815 GAKO14976 1311 aa14.38□□□□□ -0.11
CUX1-210ENST00000497815 TCRBV5S4A2TA0A5A2 114 aa14.37□□□□□ -0.11
CUX1-210ENST00000497815 MYO1BO43795 1136 aa14.37□□□□□ -0.11
CUX1-210ENST00000497815 DYNLL1P63167 89 aaKnown RBP14.37□□□□□ -0.11
CUX1-210ENST00000497815 LRRFIP1Q32MZ4 808 aaKnown RBP14.37□□□□□ -0.11
CUX1-210ENST00000497815 ANGEL2Q5VTE6 544 aaKnown RBP14.37□□□□□ -0.11
CUX1-210ENST00000497815 ZBED3Q96IU2 234 aaPredicted RBP14.37□□□□□ -0.11
CUX1-210ENST00000497815 VEZTQ9HBM0 779 aa14.37□□□□□ -0.11
CUX1-210ENST00000497815 USP40Q9NVE5 1235 aa14.37□□□□□ -0.11
CUX1-210ENST00000497815 SCAF8Q9UPN6 1271 aaKnown RBP14.37□□□□□ -0.11
CUX1-210ENST00000497815 GPR75-ASB3A0A0A6YYF3 556 aa14.36□□□□□ -0.11
CUX1-210ENST00000497815 KIF3CO14782 793 aa14.36□□□□□ -0.11
CUX1-210ENST00000497815 IGSF3O75054 1194 aa14.36□□□□□ -0.11
CUX1-210ENST00000497815 BAG3O95817 575 aa14.36□□□□□ -0.11
CUX1-210ENST00000497815 ZFYP08048 801 aaPredicted RBP14.36□□□□□ -0.11
CUX1-210ENST00000497815 CACNB3P54284 484 aa14.36□□□□□ -0.11
CUX1-210ENST00000497815 UBE3CQ15386 1083 aa14.36□□□□□ -0.11
CUX1-210ENST00000497815 CDC42EP5Q6NZY7 148 aa14.36□□□□□ -0.11
CUX1-210ENST00000497815 FAM163AQ96GL9 167 aaPredicted RBP14.36□□□□□ -0.11
CUX1-210ENST00000497815 GGA3Q9NZ52 723 aa14.36□□□□□ -0.11
CUX1-210ENST00000497815 ZNF70Q9UC06 446 aaPredicted RBP14.36□□□□□ -0.11
CUX1-210ENST00000497815 MAGEB6P1A0A0J9YX57 407 aa14.35□□□□□ -0.11
CUX1-210ENST00000497815 BMP2KLQ5H9B9 411 aa14.35□□□□□ -0.11
CUX1-210ENST00000497815 SH3RF3Q8TEJ3 882 aaPredicted RBP14.35□□□□□ -0.11
CUX1-210ENST00000497815 APPBP2Q92624 585 aa14.35□□□□□ -0.11
CUX1-210ENST00000497815 SEC62Q99442 399 aaKnown RBP14.35□□□□□ -0.11
CUX1-210ENST00000497815 DIAPH3Q9NSV4 1193 aa14.35□□□□□ -0.11
CUX1-210ENST00000497815 TMOD2Q9NZR1 351 aa14.35□□□□□ -0.11
CUX1-210ENST00000497815 MYH2Q9UKX2 1941 aa14.35□□□□□ -0.11
CUX1-210ENST00000497815 TCP10L2B9ZVM9 353 aa14.34□□□□□ -0.11
CUX1-210ENST00000497815 M0R2C6 588 aa14.34□□□□□ -0.11
CUX1-210ENST00000497815 MBD4O95243 580 aa14.34□□□□□ -0.11
CUX1-210ENST00000497815 NMIQ13287 307 aaPredicted RBP14.34□□□□□ -0.11
CUX1-210ENST00000497815 SPDYE2Q495Y8 402 aa14.34□□□□□ -0.11
CUX1-210ENST00000497815 MAP1SQ66K74 1059 aaPredicted RBP14.34□□□□□ -0.11
CUX1-210ENST00000497815 TMED8Q6PL24 325 aaPredicted RBP14.34□□□□□ -0.11
CUX1-210ENST00000497815 LDHDQ86WU2 507 aa14.34□□□□□ -0.11
CUX1-210ENST00000497815 TEX11Q8IYF3 940 aa14.34□□□□□ -0.11
CUX1-210ENST00000497815 LCORLQ8N3X6 602 aa14.34□□□□□ -0.11
CUX1-210ENST00000497815 OSBP2Q969R2 916 aa14.34□□□□□ -0.11
CUX1-210ENST00000497815 DCPSQ96C86 337 aaKnown RBP14.34□□□□□ -0.11
CUX1-210ENST00000497815 FAM227BQ96M60 508 aa14.34□□□□□ -0.11
CUX1-210ENST00000497815 PUS7LQ9H0K6 701 aaKnown RBP14.34□□□□□ -0.11
CUX1-210ENST00000497815 ARMT1Q9H993 441 aa14.34□□□□□ -0.11
CUX1-210ENST00000497815 RHBDL3P58872 404 aa14.33□□□□□ -0.12
CUX1-210ENST00000497815 PICALMQ13492 652 aa14.33□□□□□ -0.12
CUX1-210ENST00000497815 ZMYM1Q5SVZ6 1142 aa14.33□□□□□ -0.12
CUX1-210ENST00000497815 ZC3H15Q8WU90 426 aaKnown RBP14.33□□□□□ -0.12
CUX1-210ENST00000497815 AIDAQ96BJ3 306 aa14.33□□□□□ -0.12
CUX1-210ENST00000497815 RIOK1Q9BRS2 568 aaKnown RBP14.33□□□□□ -0.12
CUX1-210ENST00000497815 RFX7Q2KHR2 1363 aa14.33□□□□□ -0.12
CUX1-210ENST00000497815 A0A0D9SFI3 127 aa14.32□□□□□ -0.12
CUX1-210ENST00000497815 ADM5C9JUS6 153 aa14.32□□□□□ -0.12
CUX1-210ENST00000497815 PLCG2P16885 1265 aa14.32□□□□□ -0.12
CUX1-210ENST00000497815 PPP4CP60510 307 aa14.32□□□□□ -0.12
CUX1-210ENST00000497815 TCP10Q12799 353 aa14.32□□□□□ -0.12
CUX1-210ENST00000497815 NFIAQ12857 509 aa14.32□□□□□ -0.12
CUX1-210ENST00000497815 CHADLQ6NUI6 762 aa14.32□□□□□ -0.12
CUX1-210ENST00000497815 CWC27Q6UX04 472 aaKnown RBP14.32□□□□□ -0.12
CUX1-210ENST00000497815 DLK2Q6UY11 383 aa14.32□□□□□ -0.12
CUX1-210ENST00000497815 CCDC129Q6ZRS4 1044 aa14.32□□□□□ -0.12
CUX1-210ENST00000497815 KRT26Q7Z3Y9 468 aa14.32□□□□□ -0.12
CUX1-210ENST00000497815 USP48Q86UV5 1035 aa14.32□□□□□ -0.12
CUX1-210ENST00000497815 TGFBRAP1Q8WUH2 860 aa14.32□□□□□ -0.12
CUX1-210ENST00000497815 GLIS2Q9BZE0 524 aaPredicted RBP14.32□□□□□ -0.12
CUX1-210ENST00000497815 MYH7P12883 1935 aa14.31□□□□□ -0.12
CUX1-210ENST00000497815 HIP1O00291 1037 aa14.31□□□□□ -0.12
CUX1-210ENST00000497815 GPAA1O43292 621 aa14.31□□□□□ -0.12
CUX1-210ENST00000497815 PRKAB2O43741 272 aa14.31□□□□□ -0.12
CUX1-210ENST00000497815 WDHD1O75717 1129 aaPredicted RBP14.31□□□□□ -0.12
CUX1-210ENST00000497815 CHMLP26374 656 aa14.31□□□□□ -0.12
CUX1-210ENST00000497815 APOBEC3FQ8IUX4 373 aaKnown RBP14.31□□□□□ -0.12
CUX1-210ENST00000497815 MAPKAPK5Q8IW41 473 aa14.31□□□□□ -0.12
CUX1-210ENST00000497815 SULF1Q8IWU6 871 aa14.31□□□□□ -0.12
CUX1-210ENST00000497815 CRNKL1Q9BZJ0 848 aaKnown RBP14.31□□□□□ -0.12
CUX1-210ENST00000497815 PGAP2Q9UHJ9 254 aa14.31□□□□□ -0.12
CUX1-210ENST00000497815 AK9Q5TCS8 1911 aa14.31□□□□□ -0.12
CUX1-210ENST00000497815 USP5P45974 858 aa14.3□□□□□ -0.12
CUX1-210ENST00000497815 RASA3Q14644 834 aa14.3□□□□□ -0.12
CUX1-210ENST00000497815 MCMDC2Q4G0Z9 681 aa14.3□□□□□ -0.12
CUX1-210ENST00000497815 PRAMEF18Q5VWM3 479 aa14.3□□□□□ -0.12
CUX1-210ENST00000497815 CERS3Q8IU89 383 aa14.3□□□□□ -0.12
CUX1-210ENST00000497815 SDR42E1Q8WUS8 393 aa14.3□□□□□ -0.12
CUX1-210ENST00000497815 DEFB129Q9H1M3 183 aa14.3□□□□□ -0.12
CUX1-210ENST00000497815 DDX4Q9NQI0 724 aaKnown RBP14.3□□□□□ -0.12
CUX1-210ENST00000497815 HELLSQ9NRZ9 838 aa14.3□□□□□ -0.12
CUX1-210ENST00000497815 FAM198AQ9UFP1 575 aa14.3□□□□□ -0.12
CUX1-210ENST00000497815 SLC4A4Q9Y6R1 1079 aa14.3□□□□□ -0.12
CUX1-210ENST00000497815 PITPNM2Q9BZ72 1349 aa14.3□□□□□ -0.12
CUX1-210ENST00000497815 TRAF5O00463 557 aa14.29□□□□□ -0.12
CUX1-210ENST00000497815 CDC45O75419 566 aa14.29□□□□□ -0.12
CUX1-210ENST00000497815 TOMM70O94826 608 aa14.29□□□□□ -0.12
CUX1-210ENST00000497815 TNNI2P48788 182 aa14.29□□□□□ -0.12
CUX1-210ENST00000497815 TNFAIP1Q13829 316 aa14.29□□□□□ -0.12
CUX1-210ENST00000497815 CDC37L1Q7L3B6 337 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms