RNA–Protein interactions for RNA: ENST00000482651.5

HDGF-208, Transcript of heparin binding growth factor, human

TSL 3

Gene HDGF, Length 966 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDGF-208	ENST00000482651	VPS37D	Q86XT2	251 aa		10.88	□□□□□ -0.67
HDGF-208	ENST00000482651	APOBEC3F	Q8IUX4	373 aa	Known RBP	10.88	□□□□□ -0.67
HDGF-208	ENST00000482651	FTSJ3	Q8IY81	847 aa	Known RBP	10.88	□□□□□ -0.67
HDGF-208	ENST00000482651	PROCA1	Q8NCQ7	364 aa	Predicted RBP	10.88	□□□□□ -0.67
HDGF-208	ENST00000482651	KIF12	Q96FN5	646 aa		10.88	□□□□□ -0.67
HDGF-208	ENST00000482651	TRPM7	Q96QT4	1865 aa		10.88	□□□□□ -0.67
HDGF-208	ENST00000482651	PRDM10	Q9NQV6	1147 aa		10.88	□□□□□ -0.67
HDGF-208	ENST00000482651	JAG2	Q9Y219	1238 aa		10.88	□□□□□ -0.67
HDGF-208	ENST00000482651	ZNF646	O15015	1829 aa	Predicted RBP	10.88	□□□□□ -0.67
HDGF-208	ENST00000482651		A0A1B0GUL6	1792 aa		10.88	□□□□□ -0.67
HDGF-208	ENST00000482651		F8W031	263 aa	Predicted RBP	10.87	□□□□□ -0.67
HDGF-208	ENST00000482651	CIAO1	O76071	339 aa		10.87	□□□□□ -0.67
HDGF-208	ENST00000482651	IFIT1	P09914	478 aa	Known RBP	10.87	□□□□□ -0.67
HDGF-208	ENST00000482651	SKIV2L	Q15477	1246 aa	Known RBP	10.87	□□□□□ -0.67
HDGF-208	ENST00000482651	CFAP100	Q494V2	611 aa		10.87	□□□□□ -0.67
HDGF-208	ENST00000482651	MFSD14B	Q5SR56	506 aa		10.87	□□□□□ -0.67
HDGF-208	ENST00000482651	ATG9A	Q7Z3C6	839 aa		10.87	□□□□□ -0.67
HDGF-208	ENST00000482651	BEGAIN	Q9BUH8	593 aa		10.87	□□□□□ -0.67
HDGF-208	ENST00000482651	CHMP4B	Q9H444	224 aa	Known RBP	10.87	□□□□□ -0.67
HDGF-208	ENST00000482651	SCAF8	Q9UPN6	1271 aa	Known RBP	10.87	□□□□□ -0.67
HDGF-208	ENST00000482651	FAM155A	B1AL88	458 aa	Predicted RBP	10.86	□□□□□ -0.67
HDGF-208	ENST00000482651	HSPA8	P11142	646 aa	Known RBP	10.86	□□□□□ -0.67
HDGF-208	ENST00000482651	SLC5A1	P13866	664 aa		10.86	□□□□□ -0.67
HDGF-208	ENST00000482651	BCAM	P50895	628 aa		10.86	□□□□□ -0.67
HDGF-208	ENST00000482651	ZNF157	P51786	506 aa	Predicted RBP	10.86	□□□□□ -0.67
HDGF-208	ENST00000482651	TNS4	Q8IZW8	715 aa		10.86	□□□□□ -0.67
HDGF-208	ENST00000482651	TBC1D22A	Q8WUA7	517 aa		10.86	□□□□□ -0.67
HDGF-208	ENST00000482651	LPIN2	Q92539	896 aa		10.86	□□□□□ -0.67
HDGF-208	ENST00000482651	SIL1	Q9H173	461 aa		10.86	□□□□□ -0.67
HDGF-208	ENST00000482651	TNN	Q9UQP3	1299 aa		10.86	□□□□□ -0.67
HDGF-208	ENST00000482651	COL1A1	P02452	1464 aa	Predicted RBP	10.86	□□□□□ -0.67
HDGF-208	ENST00000482651	MYO1B	O43795	1136 aa		10.85	□□□□□ -0.67
HDGF-208	ENST00000482651	FRAT2	O75474	233 aa	Predicted RBP	10.85	□□□□□ -0.67
HDGF-208	ENST00000482651	SLC10A3	P09131	477 aa		10.85	□□□□□ -0.67
HDGF-208	ENST00000482651	NF2	P35240	595 aa		10.85	□□□□□ -0.67
HDGF-208	ENST00000482651	IL15	P40933	162 aa	Predicted RBP	10.85	□□□□□ -0.67
HDGF-208	ENST00000482651	LBX1	P52954	281 aa		10.85	□□□□□ -0.67
HDGF-208	ENST00000482651	CHAF1A	Q13111	956 aa	Predicted RBP	10.85	□□□□□ -0.67
HDGF-208	ENST00000482651	MTX1	Q13505	466 aa		10.85	□□□□□ -0.67
HDGF-208	ENST00000482651	PRAMEF18	Q5VWM3	479 aa		10.85	□□□□□ -0.67
HDGF-208	ENST00000482651	COPRS	Q9NQ92	184 aa		10.85	□□□□□ -0.67
HDGF-208	ENST00000482651	CEP126	Q9P2H0	1117 aa		10.85	□□□□□ -0.67
HDGF-208	ENST00000482651	TTF2	Q9UNY4	1162 aa	Known RBP	10.85	□□□□□ -0.67
HDGF-208	ENST00000482651	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	10.85	□□□□□ -0.67
HDGF-208	ENST00000482651	PA2G4	Q9UQ80	394 aa	Known RBP	10.85	□□□□□ -0.67
HDGF-208	ENST00000482651	PCDHAC2	Q9Y5I4	1007 aa		10.85	□□□□□ -0.67
HDGF-208	ENST00000482651	PPP2R3B	Q9Y5P8	575 aa		10.85	□□□□□ -0.67
HDGF-208	ENST00000482651	CA12	O43570	354 aa		10.84	□□□□□ -0.67
HDGF-208	ENST00000482651	GNAI2	P04899	355 aa		10.84	□□□□□ -0.67
HDGF-208	ENST00000482651	RBM5	P52756	815 aa	Known RBP eCLIP	10.84	□□□□□ -0.67	5e-8	■■□□□ 11.7
HDGF-208	ENST00000482651	ATP2B3	Q16720	1220 aa		10.84	□□□□□ -0.67
HDGF-208	ENST00000482651	DZIP1L	Q8IYY4	767 aa	Known RBP	10.84	□□□□□ -0.67
HDGF-208	ENST00000482651	PRMT6	Q96LA8	375 aa	Predicted RBP	10.84	□□□□□ -0.67
HDGF-208	ENST00000482651	ZIC5	Q96T25	663 aa		10.84	□□□□□ -0.67
HDGF-208	ENST00000482651	TMUB1	Q9BVT8	246 aa		10.84	□□□□□ -0.67
HDGF-208	ENST00000482651	DEFB129	Q9H1M3	183 aa		10.84	□□□□□ -0.67
HDGF-208	ENST00000482651	PAPPA2	Q9BXP8	1791 aa		10.84	□□□□□ -0.67
HDGF-208	ENST00000482651	CLRN2	A0PK11	232 aa		10.83	□□□□□ -0.68
HDGF-208	ENST00000482651	SPDYE5	A6NIY4	337 aa		10.83	□□□□□ -0.68
HDGF-208	ENST00000482651	UBE2Q2L	H0YL09	131 aa		10.83	□□□□□ -0.68
HDGF-208	ENST00000482651	SRGAP3	O43295	1099 aa		10.83	□□□□□ -0.68
HDGF-208	ENST00000482651	HDLBP	Q00341	1268 aa	Known RBP	10.83	□□□□□ -0.68
HDGF-208	ENST00000482651	KIF23	Q02241	960 aa	Predicted RBP	10.83	□□□□□ -0.68
HDGF-208	ENST00000482651	PDE3A	Q14432	1141 aa		10.83	□□□□□ -0.68
HDGF-208	ENST00000482651	GRIK5	Q16478	980 aa		10.83	□□□□□ -0.68
HDGF-208	ENST00000482651	MOB2	Q70IA6	237 aa		10.83	□□□□□ -0.68
HDGF-208	ENST00000482651	RASAL3	Q86YV0	1011 aa		10.83	□□□□□ -0.68
HDGF-208	ENST00000482651	TMEM57	Q8N5G2	664 aa		10.83	□□□□□ -0.68
HDGF-208	ENST00000482651	VEZT	Q9HBM0	779 aa		10.83	□□□□□ -0.68
HDGF-208	ENST00000482651	SUGT1	Q9Y2Z0	365 aa		10.83	□□□□□ -0.68
HDGF-208	ENST00000482651	AOX1	Q06278	1338 aa		10.83	□□□□□ -0.68
HDGF-208	ENST00000482651	CRK	P46108	304 aa		10.82	□□□□□ -0.68
HDGF-208	ENST00000482651	TNFAIP1	Q13829	316 aa		10.82	□□□□□ -0.68
HDGF-208	ENST00000482651	ARMC9	Q7Z3E5	817 aa		10.82	□□□□□ -0.68
HDGF-208	ENST00000482651	WDR66	Q8TBY9	1149 aa		10.82	□□□□□ -0.68
HDGF-208	ENST00000482651	ZNF70	Q9UC06	446 aa	Predicted RBP	10.82	□□□□□ -0.68
HDGF-208	ENST00000482651	MAST3	O60307	1309 aa		10.82	□□□□□ -0.68
HDGF-208	ENST00000482651	RRP1	P56182	461 aa	Known RBP	10.81	□□□□□ -0.68
HDGF-208	ENST00000482651	IRX6	P78412	446 aa	Predicted RBP	10.81	□□□□□ -0.68
HDGF-208	ENST00000482651	RASA3	Q14644	834 aa		10.81	□□□□□ -0.68
HDGF-208	ENST00000482651	SUPT20HL1	Q3ZLR7	823 aa		10.81	□□□□□ -0.68
HDGF-208	ENST00000482651	LDLRAD1	Q5T700	205 aa		10.81	□□□□□ -0.68
HDGF-208	ENST00000482651	TEKT1	Q969V4	418 aa		10.81	□□□□□ -0.68
HDGF-208	ENST00000482651	MRI	Q9BWK5	157 aa		10.81	□□□□□ -0.68
HDGF-208	ENST00000482651	TDRD3	Q9H7E2	651 aa	Known RBP	10.81	□□□□□ -0.68
HDGF-208	ENST00000482651	SNRK	Q9NRH2	765 aa		10.81	□□□□□ -0.68
HDGF-208	ENST00000482651	GNL3L	Q9NVN8	582 aa	Known RBP	10.81	□□□□□ -0.68
HDGF-208	ENST00000482651	SAGE1	Q9NXZ1	904 aa		10.81	□□□□□ -0.68
HDGF-208	ENST00000482651	PRKG1	Q13976	671 aa		10.8	□□□□□ -0.68
HDGF-208	ENST00000482651	MAP3K11	Q16584	847 aa		10.8	□□□□□ -0.68
HDGF-208	ENST00000482651	ITPRIP	Q8IWB1	547 aa		10.8	□□□□□ -0.68
HDGF-208	ENST00000482651	ZDHHC15	Q96MV8	337 aa		10.8	□□□□□ -0.68
HDGF-208	ENST00000482651	CSRNP1	Q96S65	589 aa		10.8	□□□□□ -0.68
HDGF-208	ENST00000482651	TSKS	Q9UJT2	592 aa		10.8	□□□□□ -0.68
HDGF-208	ENST00000482651	ANGEL1	Q9UNK9	670 aa	Known RBP	10.8	□□□□□ -0.68
HDGF-208	ENST00000482651	AKAP2	Q9Y2D5	859 aa		10.8	□□□□□ -0.68
HDGF-208	ENST00000482651	SSC5D	A1L4H1	1573 aa		10.8	□□□□□ -0.68
HDGF-208	ENST00000482651	PNMA6E	A0A0J9YXQ4	647 aa		10.79	□□□□□ -0.68
HDGF-208	ENST00000482651	UNCX	A6NJT0	531 aa		10.79	□□□□□ -0.68
HDGF-208	ENST00000482651	PPP1R12B	O60237	982 aa	Predicted RBP	10.79	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms