RNA–Protein interactions for RNA: ENST00000478938.1

SDF4-206, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,591 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-206ENST00000478938 ATL3Q6DD88 541 aa24.19■■□□□ 1.46
SDF4-206ENST00000478938 NCAPH2Q6IBW4 605 aa24.19■■□□□ 1.46
SDF4-206ENST00000478938 WDR93Q6P2C0 686 aa24.19■■□□□ 1.46
SDF4-206ENST00000478938 IQCA1Q86XH1 822 aa24.19■■□□□ 1.46
SDF4-206ENST00000478938 CDC5LQ99459 802 aaKnown RBP24.19■■□□□ 1.46
SDF4-206ENST00000478938 CAPS2Q9BXY5 557 aa24.19■■□□□ 1.46
SDF4-206ENST00000478938 GOLGA6AQ9NYA3 693 aa24.19■■□□□ 1.46
SDF4-206ENST00000478938 LINC00301Q8NCQ3 95 aa24.19■■□□□ 1.46
SDF4-206ENST00000478938 ADGRG1Q9Y653 693 aa24.19■■□□□ 1.46
SDF4-206ENST00000478938 FOXO3O43524 673 aa24.18■■□□□ 1.46
SDF4-206ENST00000478938 SEMA3FQ13275 785 aa24.18■■□□□ 1.46
SDF4-206ENST00000478938 SPECC1LQ69YQ0 1117 aa24.18■■□□□ 1.46
SDF4-206ENST00000478938 RAD9BQ6WBX8 426 aa24.18■■□□□ 1.46
SDF4-206ENST00000478938 AMOTL1Q8IY63 956 aa24.18■■□□□ 1.46
SDF4-206ENST00000478938 RTEL1Q9NZ71 1219 aa24.18■■□□□ 1.46
SDF4-206ENST00000478938 PTPRMP28827 1452 aa24.18■■□□□ 1.46
SDF4-206ENST00000478938 FSBPO95073 299 aa24.18■■□□□ 1.46
SDF4-206ENST00000478938 GSPT2Q8IYD1 628 aaKnown RBP24.18■■□□□ 1.46
SDF4-206ENST00000478938 OTUD6BQ8N6M0 293 aa24.18■■□□□ 1.46
SDF4-206ENST00000478938 AGPSO00116 658 aa24.17■■□□□ 1.46
SDF4-206ENST00000478938 CLASRPQ8N2M8 674 aaKnown RBP24.17■■□□□ 1.46
SDF4-206ENST00000478938 TRIM6Q9C030 488 aaPredicted RBP24.17■■□□□ 1.46
SDF4-206ENST00000478938 NEXMIFQ5QGS0 1516 aa24.17■■□□□ 1.46
SDF4-206ENST00000478938 NBPF7P0C2Y1 421 aaPredicted RBP24.17■■□□□ 1.46
SDF4-206ENST00000478938 PFKFB1P16118 471 aa24.17■■□□□ 1.46
SDF4-206ENST00000478938 TUBB4BP68371 445 aa24.17■■□□□ 1.46
SDF4-206ENST00000478938 CCT2P78371 535 aaKnown RBP24.17■■□□□ 1.46
SDF4-206ENST00000478938 NEK1Q96PY6 1258 aa24.17■■□□□ 1.46
SDF4-206ENST00000478938 AGLP35573 1532 aa24.16■■□□□ 1.46
SDF4-206ENST00000478938 CCNHP51946 323 aaPredicted RBP24.16■■□□□ 1.46
SDF4-206ENST00000478938 TBC1D8BQ0IIM8 1120 aa24.16■■□□□ 1.46
SDF4-206ENST00000478938 PPFIA1Q13136 1202 aa24.16■■□□□ 1.46
SDF4-206ENST00000478938 KIRREL3Q8IZU9 778 aa24.16■■□□□ 1.46
SDF4-206ENST00000478938 COG1Q8WTW3 980 aa24.16■■□□□ 1.46
SDF4-206ENST00000478938 NCOA5Q9HCD5 579 aaKnown RBP24.16■■□□□ 1.46
SDF4-206ENST00000478938 CLTCQ00610 1675 aaKnown RBP24.16■■□□□ 1.46
SDF4-206ENST00000478938 KIAA0754O94854 1291 aa24.16■■□□□ 1.46
SDF4-206ENST00000478938 ABL1P00519 1130 aa24.16■■□□□ 1.46
SDF4-206ENST00000478938 CENPHQ9H3R5 247 aa24.16■■□□□ 1.46
SDF4-206ENST00000478938 NPATQ14207 1427 aa24.15■■□□□ 1.46
SDF4-206ENST00000478938 ZMYND10O75800 440 aa24.15■■□□□ 1.46
SDF4-206ENST00000478938 WHAMMP3Q1A5X7 153 aa24.15■■□□□ 1.46
SDF4-206ENST00000478938 FMNL3Q8IVF7 1028 aa24.15■■□□□ 1.46
SDF4-206ENST00000478938 MROH7-TTC4A0A0A0MT08 1334 aa24.15■■□□□ 1.46
SDF4-206ENST00000478938 TUBBP07437 444 aa24.15■■□□□ 1.46
SDF4-206ENST00000478938 PIP4K2BP78356 416 aa24.15■■□□□ 1.46
SDF4-206ENST00000478938 IRX1P78414 480 aaPredicted RBP24.15■■□□□ 1.46
SDF4-206ENST00000478938 FAM69CQ0P6D2 419 aa24.15■■□□□ 1.46
SDF4-206ENST00000478938 PNOCQ13519 176 aa24.15■■□□□ 1.46
SDF4-206ENST00000478938 CRACR2AQ9BSW2 395 aa24.15■■□□□ 1.46
SDF4-206ENST00000478938 HMG20BQ9P0W2 317 aa24.15■■□□□ 1.46
SDF4-206ENST00000478938 KLHL33A6NCF5 533 aa24.14■■□□□ 1.46
SDF4-206ENST00000478938 POLR3DP05423 398 aaPredicted RBP24.14■■□□□ 1.46
SDF4-206ENST00000478938 ERCC3P19447 782 aa24.14■■□□□ 1.46
SDF4-206ENST00000478938 OTUD7BQ6GQQ9 843 aa24.14■■□□□ 1.46
SDF4-206ENST00000478938 GPATCH3Q96I76 525 aa24.14■■□□□ 1.46
SDF4-206ENST00000478938 EIF4A2Q14240 407 aaKnown RBP24.14■■□□□ 1.45
SDF4-206ENST00000478938 CRYMQ14894 314 aa24.14■■□□□ 1.45
SDF4-206ENST00000478938 WLSQ5T9L3 541 aa24.14■■□□□ 1.45
SDF4-206ENST00000478938 ARHGEF25Q86VW2 580 aa24.14■■□□□ 1.45
SDF4-206ENST00000478938 NAPGQ99747 312 aaPredicted RBP24.14■■□□□ 1.45
SDF4-206ENST00000478938 LLPHQ9BRT6 129 aaKnown RBP24.14■■□□□ 1.45
SDF4-206ENST00000478938 KLC4Q9NSK0 619 aa24.14■■□□□ 1.45
SDF4-206ENST00000478938 SPTLC2O15270 562 aa24.13■■□□□ 1.45
SDF4-206ENST00000478938 PDE4BQ07343 736 aa24.13■■□□□ 1.45
SDF4-206ENST00000478938 TUBB2AQ13885 445 aa24.13■■□□□ 1.45
SDF4-206ENST00000478938 CCDC148Q8NFR7 591 aa24.13■■□□□ 1.45
SDF4-206ENST00000478938 FSD1Q9BTV5 496 aa24.13■■□□□ 1.45
SDF4-206ENST00000478938 TUBB2BQ9BVA1 445 aa24.13■■□□□ 1.45
SDF4-206ENST00000478938 CLNS1AP54105 237 aaKnown RBP24.13■■□□□ 1.45
SDF4-206ENST00000478938 TUBE1Q9UJT0 475 aa24.13■■□□□ 1.45
SDF4-206ENST00000478938 MED23Q9ULK4 1368 aa24.13■■□□□ 1.45
SDF4-206ENST00000478938 SKAP2O75563 359 aaPredicted RBP24.12■■□□□ 1.45
SDF4-206ENST00000478938 MRPL12P52815 198 aaKnown RBP24.12■■□□□ 1.45
SDF4-206ENST00000478938 AACSQ86V21 672 aa24.12■■□□□ 1.45
SDF4-206ENST00000478938 CEP57Q86XR8 500 aa24.12■■□□□ 1.45
SDF4-206ENST00000478938 LMTK2Q8IWU2 1503 aa24.12■■□□□ 1.45
SDF4-206ENST00000478938 NDUFAB1O14561 156 aa24.12■■□□□ 1.45
SDF4-206ENST00000478938 MEFVO15553 781 aaPredicted RBP24.12■■□□□ 1.45
SDF4-206ENST00000478938 CDC27P30260 824 aa24.12■■□□□ 1.45
SDF4-206ENST00000478938 GGT6Q6P531 493 aa24.12■■□□□ 1.45
SDF4-206ENST00000478938 KCNG4Q8TDN1 519 aa24.12■■□□□ 1.45
SDF4-206ENST00000478938 SNRKQ9NRH2 765 aa24.12■■□□□ 1.45
SDF4-206ENST00000478938 HIP1O00291 1037 aa24.11■■□□□ 1.45
SDF4-206ENST00000478938 RTN2O75298 545 aa24.11■■□□□ 1.45
SDF4-206ENST00000478938 HSP90AB4PQ58FF6 505 aa24.11■■□□□ 1.45
SDF4-206ENST00000478938 CEP85LQ5SZL2 805 aa24.11■■□□□ 1.45
SDF4-206ENST00000478938 TEX13AQ9BXU3 409 aaPredicted RBP24.11■■□□□ 1.45
SDF4-206ENST00000478938 C19orf44Q9H6X5 657 aa24.11■■□□□ 1.45
SDF4-206ENST00000478938 USP14P54578 494 aa24.11■■□□□ 1.45
SDF4-206ENST00000478938 OLFM4Q6UX06 510 aa24.11■■□□□ 1.45
SDF4-206ENST00000478938 MYBL2P10244 700 aa24.1■■□□□ 1.45
SDF4-206ENST00000478938 DDX20Q9UHI6 824 aaKnown RBP24.1■■□□□ 1.45
SDF4-206ENST00000478938 PA2G4Q9UQ80 394 aaKnown RBP24.1■■□□□ 1.45
SDF4-206ENST00000478938 SH3BP1Q9Y3L3 701 aa24.1■■□□□ 1.45
SDF4-206ENST00000478938 TAF5LO75529 589 aa24.1■■□□□ 1.45
SDF4-206ENST00000478938 CPLX3Q8WVH0 158 aa24.1■■□□□ 1.45
SDF4-206ENST00000478938 KIDINS220Q9ULH0 1771 aa24.1■■□□□ 1.45
SDF4-206ENST00000478938 KRT32Q14532 448 aa24.09■■□□□ 1.45
SDF4-206ENST00000478938 ACRBPQ8NEB7 543 aa24.09■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms