RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 PNPLA7Q6ZV29 1317 aa11.1□□□□□ -0.63
CUX1-206ENST00000437600 B4E1Z4 1266 aa11.09□□□□□ -0.63
CUX1-206ENST00000437600 PRKAB2O43741 272 aa11.09□□□□□ -0.63
CUX1-206ENST00000437600 TPM2P07951 284 aa11.09□□□□□ -0.63
CUX1-206ENST00000437600 CCDC192P0DO97 292 aa11.09□□□□□ -0.63
CUX1-206ENST00000437600 KLRK1P26718 216 aa11.09□□□□□ -0.63
CUX1-206ENST00000437600 ME1P48163 572 aa11.09□□□□□ -0.63
CUX1-206ENST00000437600 DDR1Q08345 913 aa11.09□□□□□ -0.63
CUX1-206ENST00000437600 IMMTQ16891 758 aaKnown RBP11.09□□□□□ -0.63
CUX1-206ENST00000437600 MIGA1Q8NAN2 632 aa11.09□□□□□ -0.63
CUX1-206ENST00000437600 PDCL3Q9H2J4 239 aa11.09□□□□□ -0.63
CUX1-206ENST00000437600 ZNF532Q9HCE3 1301 aa11.09□□□□□ -0.63
CUX1-206ENST00000437600 CARMIL3Q8ND23 1372 aa11.09□□□□□ -0.63
CUX1-206ENST00000437600 SLC5A1P13866 664 aa11.09□□□□□ -0.63
CUX1-206ENST00000437600 ANTXR2P58335 489 aa11.09□□□□□ -0.63
CUX1-206ENST00000437600 CTDSPL2Q05D32 466 aa11.09□□□□□ -0.63
CUX1-206ENST00000437600 CSPP1Q1MSJ5 1256 aa11.09□□□□□ -0.63
CUX1-206ENST00000437600 RRP12Q5JTH9 1297 aaKnown RBP11.09□□□□□ -0.63
CUX1-206ENST00000437600 PHKBQ93100 1093 aa11.09□□□□□ -0.63
CUX1-206ENST00000437600 GOLPH3LQ9H4A5 285 aa11.09□□□□□ -0.63
CUX1-206ENST00000437600 MYO5AQ9Y4I1 1855 aaKnown RBP11.09□□□□□ -0.63
CUX1-206ENST00000437600 A0A1B0GVL5 298 aa11.09□□□□□ -0.63
CUX1-206ENST00000437600 OFD1O75665 1012 aa11.09□□□□□ -0.63
CUX1-206ENST00000437600 FGFR2P21802 821 aa11.09□□□□□ -0.63
CUX1-206ENST00000437600 SAMD1Q6SPF0 538 aaPredicted RBP11.09□□□□□ -0.63
CUX1-206ENST00000437600 CCAR1Q8IX12 1150 aaKnown RBP11.09□□□□□ -0.63
CUX1-206ENST00000437600 MAGEB6Q8N7X4 407 aa11.09□□□□□ -0.63
CUX1-206ENST00000437600 SPATA5Q8NB90 893 aa11.09□□□□□ -0.63
CUX1-206ENST00000437600 MROH5Q6ZUA9 1318 aa11.08□□□□□ -0.63
CUX1-206ENST00000437600 GOLGA8BA8MQT2 603 aa11.08□□□□□ -0.64
CUX1-206ENST00000437600 CYB5R4Q7L1T6 521 aa11.08□□□□□ -0.64
CUX1-206ENST00000437600 RALYLQ86SE5 291 aaKnown RBP11.08□□□□□ -0.64
CUX1-206ENST00000437600 ANKRD18AQ8IVF6 992 aa11.08□□□□□ -0.64
CUX1-206ENST00000437600 SMARCC2Q8TAQ2 1214 aa11.08□□□□□ -0.64
CUX1-206ENST00000437600 APPBP2Q92624 585 aa11.08□□□□□ -0.64
CUX1-206ENST00000437600 ALDH8A1Q9H2A2 487 aaPredicted RBP11.08□□□□□ -0.64
CUX1-206ENST00000437600 BAG6P46379 1132 aa11.08□□□□□ -0.64
CUX1-206ENST00000437600 MICU3Q86XE3 530 aa11.08□□□□□ -0.64
CUX1-206ENST00000437600 TBC1D10CQ8IV04 446 aa11.08□□□□□ -0.64
CUX1-206ENST00000437600 DRC7Q8IY82 874 aa11.08□□□□□ -0.64
CUX1-206ENST00000437600 NBPF3Q9H094 633 aa11.08□□□□□ -0.64
CUX1-206ENST00000437600 CBX8Q9HC52 389 aa11.08□□□□□ -0.64
CUX1-206ENST00000437600 CLIC4Q9Y696 253 aa11.08□□□□□ -0.64
CUX1-206ENST00000437600 LAMB2P55268 1798 aa11.07□□□□□ -0.64
CUX1-206ENST00000437600 CPLX1O14810 134 aa11.07□□□□□ -0.64
CUX1-206ENST00000437600 LETM1O95202 739 aaPredicted RBP11.07□□□□□ -0.64
CUX1-206ENST00000437600 HMGB1P09429 215 aaKnown RBP11.07□□□□□ -0.64
CUX1-206ENST00000437600 PDE6AP16499 860 aa11.07□□□□□ -0.64
CUX1-206ENST00000437600 CNBD1Q8NA66 436 aa11.07□□□□□ -0.64
CUX1-206ENST00000437600 ARMT1Q9H993 441 aa11.07□□□□□ -0.64
CUX1-206ENST00000437600 TNRC6CQ9HCJ0 1690 aaKnown RBP11.07□□□□□ -0.64
CUX1-206ENST00000437600 SERPINB2P05120 415 aa11.07□□□□□ -0.64
CUX1-206ENST00000437600 MARCKSP29966 332 aaPredicted RBP11.07□□□□□ -0.64
CUX1-206ENST00000437600 ADD2P35612 726 aa11.07□□□□□ -0.64
CUX1-206ENST00000437600 SLC15A2Q16348 729 aa11.07□□□□□ -0.64
CUX1-206ENST00000437600 PRR5LQ6MZQ0 368 aa11.07□□□□□ -0.64
CUX1-206ENST00000437600 CDC5LQ99459 802 aaKnown RBP11.07□□□□□ -0.64
CUX1-206ENST00000437600 FAM13BQ9NYF5 915 aa11.07□□□□□ -0.64
CUX1-206ENST00000437600 ORC3Q9UBD5 711 aaPredicted RBP11.07□□□□□ -0.64
CUX1-206ENST00000437600 HPS5Q9UPZ3 1129 aa11.07□□□□□ -0.64
CUX1-206ENST00000437600 BIN1O00499 593 aa11.06□□□□□ -0.64
CUX1-206ENST00000437600 ZNF165P49910 485 aa11.06□□□□□ -0.64
CUX1-206ENST00000437600 LRMPQ12912 555 aa11.06□□□□□ -0.64
CUX1-206ENST00000437600 SLC4A8Q2Y0W8 1093 aa11.06□□□□□ -0.64
CUX1-206ENST00000437600 TPTE2Q6XPS3 522 aa11.06□□□□□ -0.64
CUX1-206ENST00000437600 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.06□□□□□ -0.64
CUX1-206ENST00000437600 NLRP3Q96P20 1036 aa11.06□□□□□ -0.64
CUX1-206ENST00000437600 GPR101Q96P66 508 aaPredicted RBP11.06□□□□□ -0.64
CUX1-206ENST00000437600 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.06□□□□□ -0.647e-7■■■□□ 15.6
CUX1-206ENST00000437600 MMP10P09238 476 aa11.06□□□□□ -0.64
CUX1-206ENST00000437600 MCM5P33992 734 aa11.06□□□□□ -0.64
CUX1-206ENST00000437600 SASS6Q6UVJ0 657 aa11.06□□□□□ -0.64
CUX1-206ENST00000437600 VPS37DQ86XT2 251 aa11.06□□□□□ -0.64
CUX1-206ENST00000437600 TRIM5Q9C035 493 aa11.06□□□□□ -0.64
CUX1-206ENST00000437600 LRP2BPQ9P2M1 347 aa11.06□□□□□ -0.64
CUX1-206ENST00000437600 PYCARDQ9ULZ3 195 aa11.06□□□□□ -0.64
CUX1-206ENST00000437600 MINPP1Q9UNW1 487 aa11.06□□□□□ -0.64
CUX1-206ENST00000437600 TACC3Q9Y6A5 838 aa11.06□□□□□ -0.64
CUX1-206ENST00000437600 AKAP11Q9UKA4 1901 aa11.06□□□□□ -0.64
CUX1-206ENST00000437600 KIF28PB7ZC32 967 aa11.06□□□□□ -0.64
CUX1-206ENST00000437600 ZNF500O60304 480 aaPredicted RBP11.06□□□□□ -0.64
CUX1-206ENST00000437600 ADRA2BP18089 450 aa11.06□□□□□ -0.64
CUX1-206ENST00000437600 PTGS1P23219 599 aa11.06□□□□□ -0.64
CUX1-206ENST00000437600 NCOA7Q8NI08 942 aa11.06□□□□□ -0.64
CUX1-206ENST00000437600 BBXQ8WY36 941 aaPredicted RBP11.06□□□□□ -0.64
CUX1-206ENST00000437600 AIDAQ96BJ3 306 aa11.06□□□□□ -0.64
CUX1-206ENST00000437600 CFAP45Q9UL16 551 aa11.06□□□□□ -0.64
CUX1-206ENST00000437600 MBD4O95243 580 aa11.05□□□□□ -0.64
CUX1-206ENST00000437600 ARID4AP29374 1257 aaPredicted RBP11.05□□□□□ -0.64
CUX1-206ENST00000437600 CDC27P30260 824 aa11.05□□□□□ -0.64
CUX1-206ENST00000437600 HS1BP3Q53T59 392 aa11.05□□□□□ -0.64
CUX1-206ENST00000437600 C11orf57Q6ZUT1 292 aaPredicted RBP11.05□□□□□ -0.64
CUX1-206ENST00000437600 C8orf76Q96K31 380 aa11.05□□□□□ -0.64
CUX1-206ENST00000437600 KCNF1Q9H3M0 494 aa11.05□□□□□ -0.64
CUX1-206ENST00000437600 PCDHA7Q9UN72 937 aa11.05□□□□□ -0.64
CUX1-206ENST00000437600 RFX7Q2KHR2 1363 aa11.05□□□□□ -0.64
CUX1-206ENST00000437600 POLRMTO00411 1230 aaKnown RBP11.05□□□□□ -0.64
CUX1-206ENST00000437600 ZFYP08048 801 aaPredicted RBP11.05□□□□□ -0.64
CUX1-206ENST00000437600 ARID5BQ14865 1188 aa11.05□□□□□ -0.64
CUX1-206ENST00000437600 SF3A1Q15459 793 aaKnown RBP11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms