RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 GPATCH11Q8N954 259 aa5.68□□□□□ -1.5
SF3B1-202ENST00000409915 IL17REQ8NFR9 667 aa5.68□□□□□ -1.5
SF3B1-202ENST00000409915 JDP2Q8WYK2 163 aa5.68□□□□□ -1.5
SF3B1-202ENST00000409915 PDGFDQ9GZP0 370 aaPredicted RBP5.68□□□□□ -1.5
SF3B1-202ENST00000409915 SLC52A2Q9HAB3 445 aa5.68□□□□□ -1.5
SF3B1-202ENST00000409915 ATG3Q9NT62 314 aa5.68□□□□□ -1.5
SF3B1-202ENST00000409915 ADAMTS8Q9UP79 889 aa5.68□□□□□ -1.5
SF3B1-202ENST00000409915 ADAMTS7Q9UKP4 1686 aa5.68□□□□□ -1.5
SF3B1-202ENST00000409915 MAPK8IP3Q9UPT6 1336 aa5.68□□□□□ -1.5
SF3B1-202ENST00000409915 LY75O60449 1722 aa5.68□□□□□ -1.5
SF3B1-202ENST00000409915 PPP1R12AO14974 1030 aaPredicted RBP5.67□□□□□ -1.5
SF3B1-202ENST00000409915 PRC1O43663 620 aa5.67□□□□□ -1.5
SF3B1-202ENST00000409915 PTCD1O75127 700 aaKnown RBP5.67□□□□□ -1.5
SF3B1-202ENST00000409915 NR1I2O75469 434 aa5.67□□□□□ -1.5
SF3B1-202ENST00000409915 FGRP09769 529 aa5.67□□□□□ -1.5
SF3B1-202ENST00000409915 ATP1A2P50993 1020 aa5.67□□□□□ -1.5
SF3B1-202ENST00000409915 ITPK1Q13572 414 aa5.67□□□□□ -1.5
SF3B1-202ENST00000409915 C4orf46Q504U0 113 aa5.67□□□□□ -1.5
SF3B1-202ENST00000409915 LIAT1Q6ZQX7 453 aa5.67□□□□□ -1.5
SF3B1-202ENST00000409915 TRIM67Q6ZTA4 783 aa5.67□□□□□ -1.5
SF3B1-202ENST00000409915 AMIGO3Q86WK7 504 aa5.67□□□□□ -1.5
SF3B1-202ENST00000409915 VPS37DQ86XT2 251 aa5.67□□□□□ -1.5
SF3B1-202ENST00000409915 TRIM50Q86XT4 487 aa5.67□□□□□ -1.5
SF3B1-202ENST00000409915 LINC00116Q8NCU8 138 aa5.67□□□□□ -1.5
SF3B1-202ENST00000409915 IPO4Q8TEX9 1081 aaKnown RBP5.67□□□□□ -1.5
SF3B1-202ENST00000409915 SLC4A9Q96Q91 983 aa5.67□□□□□ -1.5
SF3B1-202ENST00000409915 RPS6KC1Q96S38 1066 aa5.67□□□□□ -1.5
SF3B1-202ENST00000409915 SPSB2Q99619 263 aa5.67□□□□□ -1.5
SF3B1-202ENST00000409915 STK32BQ9NY57 414 aa5.67□□□□□ -1.5
SF3B1-202ENST00000409915 PNMA2Q9UL42 364 aa5.67□□□□□ -1.5
SF3B1-202ENST00000409915 PCDHGB7Q9Y5F8 929 aa5.67□□□□□ -1.5
SF3B1-202ENST00000409915 VIRMAQ69YN4 1812 aaKnown RBP5.67□□□□□ -1.5
SF3B1-202ENST00000409915 CEMIPQ8WUJ3 1361 aa5.67□□□□□ -1.5
SF3B1-202ENST00000409915 C5P01031 1676 aa5.66□□□□□ -1.5
SF3B1-202ENST00000409915 KCPQ6ZWJ8 1503 aa5.66□□□□□ -1.5
SF3B1-202ENST00000409915 LOC102724428A0A0B4J2F2 783 aa5.66□□□□□ -1.5
SF3B1-202ENST00000409915 KCNQ3O43525 872 aa5.66□□□□□ -1.5
SF3B1-202ENST00000409915 NDUFB5O43674 189 aa5.66□□□□□ -1.5
SF3B1-202ENST00000409915 NEFMP07197 916 aa5.66□□□□□ -1.5
SF3B1-202ENST00000409915 PDGFRBP09619 1106 aa5.66□□□□□ -1.5
SF3B1-202ENST00000409915 ATP6V1AP38606 617 aa5.66□□□□□ -1.5
SF3B1-202ENST00000409915 SEC13P55735 322 aa5.66□□□□□ -1.5
SF3B1-202ENST00000409915 SIK1P57059 783 aa5.66□□□□□ -1.5
SF3B1-202ENST00000409915 TEFQ10587 303 aa5.66□□□□□ -1.5
SF3B1-202ENST00000409915 SLC15A2Q16348 729 aa5.66□□□□□ -1.5
SF3B1-202ENST00000409915 ZNF394Q53GI3 561 aa5.66□□□□□ -1.5
SF3B1-202ENST00000409915 SLC27A3Q5K4L6 730 aa5.66□□□□□ -1.5
SF3B1-202ENST00000409915 NBPF14Q5TI25 921 aa5.66□□□□□ -1.5
SF3B1-202ENST00000409915 ZNF654Q8IZM8 581 aa5.66□□□□□ -1.5
SF3B1-202ENST00000409915 RTF1Q92541 710 aaKnown RBP5.66□□□□□ -1.5
SF3B1-202ENST00000409915 SYMPKQ92797 1274 aaKnown RBP5.66□□□□□ -1.5
SF3B1-202ENST00000409915 SMARCC1Q92922 1105 aaPredicted RBP5.66□□□□□ -1.5
SF3B1-202ENST00000409915 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.66□□□□□ -1.58e-41■□□□□ 9.4
SF3B1-202ENST00000409915 SLC6A16Q9GZN6 736 aa5.66□□□□□ -1.5
SF3B1-202ENST00000409915 MIS18AQ9NYP9 233 aa5.66□□□□□ -1.5
SF3B1-202ENST00000409915 DDX41Q9UJV9 622 aaKnown RBP5.66□□□□□ -1.5
SF3B1-202ENST00000409915 KIAA1024Q9UPX6 916 aa5.66□□□□□ -1.5
SF3B1-202ENST00000409915 PRKAB1Q9Y478 270 aa5.66□□□□□ -1.5
SF3B1-202ENST00000409915 TUBGCP6Q96RT7 1819 aa5.66□□□□□ -1.5
SF3B1-202ENST00000409915 DLG5Q8TDM6 1919 aa5.66□□□□□ -1.5
SF3B1-202ENST00000409915 C4BP0C0L5 1744 aa5.65□□□□□ -1.5
SF3B1-202ENST00000409915 SIPA1L3O60292 1781 aaPredicted RBP5.65□□□□□ -1.5
SF3B1-202ENST00000409915 NRG2O14511 850 aaPredicted RBP5.65□□□□□ -1.5
SF3B1-202ENST00000409915 LGR5O75473 907 aa5.65□□□□□ -1.5
SF3B1-202ENST00000409915 DKK1O94907 266 aa5.65□□□□□ -1.5
SF3B1-202ENST00000409915 ZBTB7AO95365 584 aa5.65□□□□□ -1.5
SF3B1-202ENST00000409915 SLC19A1P41440 591 aa5.65□□□□□ -1.5
SF3B1-202ENST00000409915 TMPOP42166 694 aaKnown RBP5.65□□□□□ -1.5
SF3B1-202ENST00000409915 RIPK4P57078 832 aa5.65□□□□□ -1.5
SF3B1-202ENST00000409915 RACK1P63244 317 aaKnown RBP5.65□□□□□ -1.5
SF3B1-202ENST00000409915 AMPD3Q01432 767 aa5.65□□□□□ -1.5
SF3B1-202ENST00000409915 ATP2B2Q01814 1243 aa5.65□□□□□ -1.5
SF3B1-202ENST00000409915 HSP90AA2PQ14568 343 aaPredicted RBP5.65□□□□□ -1.5
SF3B1-202ENST00000409915 BRICD5Q6PL45 260 aa5.65□□□□□ -1.5
SF3B1-202ENST00000409915 CAPN12Q6ZSI9 719 aa5.65□□□□□ -1.5
SF3B1-202ENST00000409915 CKAP2LQ8IYA6 745 aa5.65□□□□□ -1.5
SF3B1-202ENST00000409915 SIX5Q8N196 739 aa5.65□□□□□ -1.5
SF3B1-202ENST00000409915 PRPF38AQ8NAV1 312 aaKnown RBP5.65□□□□□ -1.5
SF3B1-202ENST00000409915 RUNDC1Q96C34 613 aa5.65□□□□□ -1.5
SF3B1-202ENST00000409915 MAF1Q9H063 256 aa5.65□□□□□ -1.5
SF3B1-202ENST00000409915 CYLDQ9NQC7 956 aa5.65□□□□□ -1.5
SF3B1-202ENST00000409915 WWC3Q9ULE0 1092 aa5.65□□□□□ -1.5
SF3B1-202ENST00000409915 PNPLA7Q6ZV29 1317 aa5.65□□□□□ -1.51
SF3B1-202ENST00000409915 TJP1Q07157 1748 aa5.65□□□□□ -1.51
SF3B1-202ENST00000409915 CASZ1Q86V15 1759 aa5.65□□□□□ -1.51
SF3B1-202ENST00000409915 TAF1LQ8IZX4 1826 aa5.64□□□□□ -1.51
SF3B1-202ENST00000409915 PRAMEF22A3QJZ6 481 aa5.64□□□□□ -1.51
SF3B1-202ENST00000409915 BTBD11A6QL63 1104 aa5.64□□□□□ -1.51
SF3B1-202ENST00000409915 APAF1O14727 1248 aa5.64□□□□□ -1.51
SF3B1-202ENST00000409915 PLCB3Q01970 1234 aa5.64□□□□□ -1.51
SF3B1-202ENST00000409915 EHHADHQ08426 723 aa5.64□□□□□ -1.51
SF3B1-202ENST00000409915 FOXD4Q12950 439 aaPredicted RBP5.64□□□□□ -1.51
SF3B1-202ENST00000409915 DSC3Q14574 896 aa5.64□□□□□ -1.51
SF3B1-202ENST00000409915 ENOX2Q16206 610 aaKnown RBP5.64□□□□□ -1.51
SF3B1-202ENST00000409915 ODR4Q5SWX8 454 aa5.64□□□□□ -1.51
SF3B1-202ENST00000409915 DNAJC10Q8IXB1 793 aa5.64□□□□□ -1.51
SF3B1-202ENST00000409915 FAM9BQ8IZU0 186 aa5.64□□□□□ -1.51
SF3B1-202ENST00000409915 TTC5Q8N0Z6 440 aa5.64□□□□□ -1.51
SF3B1-202ENST00000409915 PNISRQ8TF01 805 aaKnown RBP5.64□□□□□ -1.51
SF3B1-202ENST00000409915 ZNF496Q96IT1 587 aaPredicted RBP5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 139.5 ms