RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 FAM151AQ8WW52 585 aa35.51■■■■□ 3.28
HMGB1-205ENST00000399494 RPAP1Q9BWH6 1393 aaPredicted RBP35.51■■■■□ 3.27
HMGB1-205ENST00000399494 BTBD19C9JJ37 291 aa35.5■■■■□ 3.27
HMGB1-205ENST00000399494 PPIL2Q13356 520 aa35.5■■■■□ 3.27
HMGB1-205ENST00000399494 SNAPC2Q13487 334 aa35.5■■■■□ 3.27
HMGB1-205ENST00000399494 ZCCHC17Q9NP64 241 aaKnown RBP35.5■■■■□ 3.27
HMGB1-205ENST00000399494 FBXO3Q9UK99 471 aa35.5■■■■□ 3.27
HMGB1-205ENST00000399494 TLR2O60603 784 aa35.49■■■■□ 3.27
HMGB1-205ENST00000399494 ZNF341Q9BYN7 854 aa35.49■■■■□ 3.27
HMGB1-205ENST00000399494 DAGLAQ9Y4D2 1042 aa35.49■■■■□ 3.27
HMGB1-205ENST00000399494 EN2P19622 333 aaPredicted RBP35.48■■■■□ 3.27
HMGB1-205ENST00000399494 SIL1Q9H173 461 aa35.48■■■■□ 3.27
HMGB1-205ENST00000399494 PTCH2Q9Y6C5 1203 aa35.48■■■■□ 3.27
HMGB1-205ENST00000399494 RBBP6Q7Z6E9 1792 aaKnown RBP35.47■■■■□ 3.27
HMGB1-205ENST00000399494 WDHD1O75717 1129 aaPredicted RBP35.47■■■■□ 3.27
HMGB1-205ENST00000399494 CIAO1O76071 339 aa35.47■■■■□ 3.27
HMGB1-205ENST00000399494 UBTFL1P0CB47 393 aaPredicted RBP35.47■■■■□ 3.27
HMGB1-205ENST00000399494 PPATQ06203 517 aa35.47■■■■□ 3.27
HMGB1-205ENST00000399494 DIXDC1Q155Q3 683 aa35.47■■■■□ 3.27
HMGB1-205ENST00000399494 CDC42EP5Q6NZY7 148 aa35.47■■■■□ 3.27
HMGB1-205ENST00000399494 ZNF333Q96JL9 665 aa35.47■■■■□ 3.27
HMGB1-205ENST00000399494 CEP126Q9P2H0 1117 aa35.47■■■■□ 3.27
HMGB1-205ENST00000399494 ZNF112Q9UJU3 913 aa35.47■■■■□ 3.27
HMGB1-205ENST00000399494 NOB1Q9ULX3 412 aaKnown RBP35.47■■■■□ 3.27
HMGB1-205ENST00000399494 PRDX5P30044 214 aa35.46■■■■□ 3.27
HMGB1-205ENST00000399494 INPP5BP32019 993 aa35.46■■■■□ 3.27
HMGB1-205ENST00000399494 ATP2B3Q16720 1220 aa35.46■■■■□ 3.27
HMGB1-205ENST00000399494 MKI67P46013 3256 aaKnown RBP35.45■■■■□ 3.27
HMGB1-205ENST00000399494 TCP10Q12799 353 aa35.44■■■■□ 3.26
HMGB1-205ENST00000399494 NBPF11Q86T75 865 aa35.44■■■■□ 3.26
HMGB1-205ENST00000399494 TMEM106CQ9BVX2 250 aa35.44■■■■□ 3.26
HMGB1-205ENST00000399494 GNL3LQ9NVN8 582 aaKnown RBP35.44■■■■□ 3.26
HMGB1-205ENST00000399494 KIAA0100Q14667 2235 aaKnown RBP35.43■■■■□ 3.26
HMGB1-205ENST00000399494 NFIAQ12857 509 aa35.43■■■■□ 3.26
HMGB1-205ENST00000399494 SLC9C1Q4G0N8 1177 aa35.43■■■■□ 3.26
HMGB1-205ENST00000399494 API5Q9BZZ5 524 aaKnown RBP35.43■■■■□ 3.26
HMGB1-205ENST00000399494 ARHGAP39Q9C0H5 1083 aa35.43■■■■□ 3.26
HMGB1-205ENST00000399494 MYH13Q9UKX3 1938 aa35.42■■■■□ 3.26
HMGB1-205ENST00000399494 LDHBP07195 334 aaKnown RBP35.42■■■■□ 3.26
HMGB1-205ENST00000399494 LACTBP83111 547 aaPredicted RBP35.42■■■■□ 3.26
HMGB1-205ENST00000399494 FAM198AQ9UFP1 575 aa35.42■■■■□ 3.26
HMGB1-205ENST00000399494 SALL1Q9NSC2 1324 aa35.41■■■■□ 3.26
HMGB1-205ENST00000399494 GOLGA6L2Q8N9W4 650 aaPredicted RBP35.41■■■■□ 3.26
HMGB1-205ENST00000399494 USP40Q9NVE5 1235 aa35.41■■■■□ 3.26
HMGB1-205ENST00000399494 IL15P40933 162 aaPredicted RBP35.4■■■■□ 3.26
HMGB1-205ENST00000399494 PHKA1P46020 1223 aa35.4■■■■□ 3.26
HMGB1-205ENST00000399494 KIF22Q14807 665 aa35.4■■■■□ 3.26
HMGB1-205ENST00000399494 GCC1Q96CN9 775 aa35.4■■■■□ 3.26
HMGB1-205ENST00000399494 DENND2AQ9ULE3 1009 aa35.4■■■■□ 3.26
HMGB1-205ENST00000399494 PA2G4Q9UQ80 394 aaKnown RBP35.4■■■■□ 3.26
HMGB1-205ENST00000399494 LRRFIP2Q9Y608 721 aaKnown RBP35.4■■■■□ 3.26
HMGB1-205ENST00000399494 C17orf99Q6UX52 265 aa35.39■■■■□ 3.26
HMGB1-205ENST00000399494 KCNH4Q9UQ05 1017 aa35.39■■■■□ 3.26
HMGB1-205ENST00000399494 SEMA3EO15041 775 aa35.38■■■■□ 3.25
HMGB1-205ENST00000399494 ZBTB22O15209 634 aa35.38■■■■□ 3.25
HMGB1-205ENST00000399494 BCAR3O75815 825 aa35.38■■■■□ 3.25
HMGB1-205ENST00000399494 ANKRD23Q86SG2 305 aa35.38■■■■□ 3.25
HMGB1-205ENST00000399494 ZFPM1Q8IX07 1006 aa35.38■■■■□ 3.25
HMGB1-205ENST00000399494 GNRH1P01148 92 aa35.37■■■■□ 3.25
HMGB1-205ENST00000399494 FRAT1Q92837 279 aaPredicted RBP35.37■■■■□ 3.25
HMGB1-205ENST00000399494 COPRSQ9NQ92 184 aa35.37■■■■□ 3.25
HMGB1-205ENST00000399494 HDAC5Q9UQL6 1122 aa35.37■■■■□ 3.25
HMGB1-205ENST00000399494 BRCA2P51587 3418 aa35.37■■■■□ 3.25
HMGB1-205ENST00000399494 IPO8O15397 1037 aaKnown RBP35.36■■■■□ 3.25
HMGB1-205ENST00000399494 NOL9Q5SY16 702 aaKnown RBP35.36■■■■□ 3.25
HMGB1-205ENST00000399494 ZSWIM8A7E2V4 1837 aa35.35■■■■□ 3.25
HMGB1-205ENST00000399494 ADORA1P30542 326 aa35.35■■■■□ 3.25
HMGB1-205ENST00000399494 MOGSQ13724 837 aa35.35■■■■□ 3.25
HMGB1-205ENST00000399494 ARHGAP45Q92619 1136 aa35.35■■■■□ 3.25
HMGB1-205ENST00000399494 PDHXO00330 501 aa35.34■■■■□ 3.25
HMGB1-205ENST00000399494 CCDC102BQ68D86 513 aa35.34■■■■□ 3.25
HMGB1-205ENST00000399494 SH3TC2Q8TF17 1288 aa35.34■■■■□ 3.25
HMGB1-205ENST00000399494 CPA4Q9UI42 421 aa35.34■■■■□ 3.25
HMGB1-205ENST00000399494 CTGFP29279 349 aa35.33■■■■□ 3.25
HMGB1-205ENST00000399494 PRMT2P55345 433 aa35.33■■■■□ 3.25
HMGB1-205ENST00000399494 SLC4A8Q2Y0W8 1093 aa35.33■■■■□ 3.25
HMGB1-205ENST00000399494 MEIS3Q99687 375 aa35.33■■■■□ 3.25
HMGB1-205ENST00000399494 AK9Q5TCS8 1911 aa35.32■■■■□ 3.25
HMGB1-205ENST00000399494 TIMM10P62072 90 aa35.32■■■■□ 3.24
HMGB1-205ENST00000399494 IDI2Q9BXS1 227 aa35.32■■■■□ 3.24
HMGB1-205ENST00000399494 ZGPATQ8N5A5 531 aaKnown RBP35.31■■■■□ 3.24
HMGB1-205ENST00000399494 ADGRA2Q96PE1 1338 aa35.31■■■■□ 3.24
HMGB1-205ENST00000399494 PHF20L1A8MW92 1017 aa35.3■■■■□ 3.24
HMGB1-205ENST00000399494 MYCP01106 439 aaPredicted RBP35.3■■■■□ 3.24
HMGB1-205ENST00000399494 HABP4Q5JVS0 413 aaKnown RBP35.3■■■■□ 3.24
HMGB1-205ENST00000399494 GAKO14976 1311 aa35.3■■■■□ 3.24
HMGB1-205ENST00000399494 ATRNL1Q5VV63 1379 aa35.29■■■■□ 3.24
HMGB1-205ENST00000399494 CXCL11O14625 94 aa35.29■■■■□ 3.24
HMGB1-205ENST00000399494 ENTPD3O75355 529 aa35.29■■■■□ 3.24
HMGB1-205ENST00000399494 ECM2O94769 699 aaPredicted RBP35.29■■■■□ 3.24
HMGB1-205ENST00000399494 PSMC4P43686 418 aa35.29■■■■□ 3.24
HMGB1-205ENST00000399494 RGS3P49796 1198 aa35.29■■■■□ 3.24
HMGB1-205ENST00000399494 TRIM47Q96LD4 638 aa35.29■■■■□ 3.24
HMGB1-205ENST00000399494 RASGRF1Q13972 1273 aa35.28■■■■□ 3.24
HMGB1-205ENST00000399494 GPAT2Q6NUI2 795 aa35.28■■■■□ 3.24
HMGB1-205ENST00000399494 FAM163AQ96GL9 167 aaPredicted RBP35.28■■■■□ 3.24
HMGB1-205ENST00000399494 SRRDQ9UH36 339 aa35.28■■■■□ 3.24
HMGB1-205ENST00000399494 MAP3K10Q02779 954 aa35.27■■■■□ 3.24
HMGB1-205ENST00000399494 ATF7IPQ6VMQ6 1270 aa35.27■■■■□ 3.24
HMGB1-205ENST00000399494 SH3BP5LQ7L8J4 393 aa35.27■■■■□ 3.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms