RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 PEAR1Q5VY43 1037 aaPredicted RBP5.99□□□□□ -1.45
HMGB1-204ENST00000399489 PHLDB3Q6NSJ2 640 aa5.99□□□□□ -1.45
HMGB1-204ENST00000399489 FBXL6Q8N531 539 aa5.99□□□□□ -1.45
HMGB1-204ENST00000399489 TUT1Q9H6E5 874 aaKnown RBP5.99□□□□□ -1.45
HMGB1-204ENST00000399489 A0A1W2PP55 124 aa5.99□□□□□ -1.45
HMGB1-204ENST00000399489 PSPNO60542 156 aa5.99□□□□□ -1.45
HMGB1-204ENST00000399489 POU4F3Q15319 338 aa5.99□□□□□ -1.45
HMGB1-204ENST00000399489 CCNJLQ8IV13 435 aa5.99□□□□□ -1.45
HMGB1-204ENST00000399489 CORO1BQ9BR76 489 aa5.99□□□□□ -1.45
HMGB1-204ENST00000399489 JAG2Q9Y219 1238 aa5.99□□□□□ -1.45
HMGB1-204ENST00000399489 OAS3Q9Y6K5 1087 aaKnown RBP5.99□□□□□ -1.45
HMGB1-204ENST00000399489 MAP7Q14244 749 aa5.98□□□□□ -1.45
HMGB1-204ENST00000399489 FBLIM1Q8WUP2 373 aa5.98□□□□□ -1.45
HMGB1-204ENST00000399489 CITED4Q96RK1 184 aa5.98□□□□□ -1.45
HMGB1-204ENST00000399489 EHD4Q9H223 541 aa5.98□□□□□ -1.45
HMGB1-204ENST00000399489 METTL12A8MUP2 240 aa5.97□□□□□ -1.45
HMGB1-204ENST00000399489 CPNE3O75131 537 aaKnown RBP5.97□□□□□ -1.45
HMGB1-204ENST00000399489 NCLP19338 710 aaKnown RBP5.97□□□□□ -1.45
HMGB1-204ENST00000399489 ANKRD13AQ8IZ07 590 aa5.97□□□□□ -1.45
HMGB1-204ENST00000399489 TMC1Q8TDI8 760 aa5.97□□□□□ -1.45
HMGB1-204ENST00000399489 TBC1D32Q96NH3 1257 aa5.97□□□□□ -1.45
HMGB1-204ENST00000399489 BCL2L13Q9BXK5 485 aa5.97□□□□□ -1.45
HMGB1-204ENST00000399489 CADPSQ9ULU8 1353 aa5.97□□□□□ -1.45
HMGB1-204ENST00000399489 F13BP05160 661 aa5.96□□□□□ -1.45
HMGB1-204ENST00000399489 ADH5P11766 374 aa5.96□□□□□ -1.45
HMGB1-204ENST00000399489 DRD2P14416 443 aa5.96□□□□□ -1.45
HMGB1-204ENST00000399489 MAOBP27338 520 aa5.96□□□□□ -1.45
HMGB1-204ENST00000399489 CYP27A1Q02318 531 aa5.96□□□□□ -1.45
HMGB1-204ENST00000399489 KIAA0319Q5VV43 1072 aa5.96□□□□□ -1.45
HMGB1-204ENST00000399489 DUSP27Q5VZP5 1158 aa5.96□□□□□ -1.45
HMGB1-204ENST00000399489 C2CD4AQ8NCU7 369 aaPredicted RBP5.96□□□□□ -1.45
HMGB1-204ENST00000399489 UBXN4Q92575 508 aa5.96□□□□□ -1.45
HMGB1-204ENST00000399489 FOSL1P15407 271 aa5.96□□□□□ -1.46
HMGB1-204ENST00000399489 ZC3H6P61129 1189 aaKnown RBP5.96□□□□□ -1.46
HMGB1-204ENST00000399489 SPRED3Q2MJR0 410 aa5.96□□□□□ -1.46
HMGB1-204ENST00000399489 AKAP4Q5JQC9 854 aa5.96□□□□□ -1.46
HMGB1-204ENST00000399489 CDPF1Q6NVV7 123 aa5.96□□□□□ -1.46
HMGB1-204ENST00000399489 DYMQ7RTS9 669 aa5.96□□□□□ -1.46
HMGB1-204ENST00000399489 POU5F2Q8N7G0 328 aa5.96□□□□□ -1.46
HMGB1-204ENST00000399489 GIPC2Q8TF65 315 aa5.96□□□□□ -1.46
HMGB1-204ENST00000399489 TCF12Q99081 682 aa5.96□□□□□ -1.46
HMGB1-204ENST00000399489 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP5.95□□□□□ -1.46
HMGB1-204ENST00000399489 CYP26A1O43174 497 aa5.95□□□□□ -1.46
HMGB1-204ENST00000399489 GADD45BO75293 160 aaPredicted RBP5.95□□□□□ -1.46
HMGB1-204ENST00000399489 RAB6AP20340 208 aa5.95□□□□□ -1.46
HMGB1-204ENST00000399489 GRIA4P48058 902 aa5.95□□□□□ -1.46
HMGB1-204ENST00000399489 AP3B2Q13367 1082 aa5.95□□□□□ -1.46
HMGB1-204ENST00000399489 PDE3AQ14432 1141 aa5.95□□□□□ -1.46
HMGB1-204ENST00000399489 ZNF423Q2M1K9 1284 aa5.95□□□□□ -1.46
HMGB1-204ENST00000399489 OGFOD2Q6N063 350 aa5.95□□□□□ -1.46
HMGB1-204ENST00000399489 FBXL18Q96ME1 805 aa5.95□□□□□ -1.46
HMGB1-204ENST00000399489 DNAJC25Q9H1X3 360 aa5.95□□□□□ -1.46
HMGB1-204ENST00000399489 PPP4R2Q9NY27 417 aa5.95□□□□□ -1.46
HMGB1-204ENST00000399489 AP4E1Q9UPM8 1137 aa5.95□□□□□ -1.46
HMGB1-204ENST00000399489 TRAK1Q9UPV9 953 aa5.95□□□□□ -1.46
HMGB1-204ENST00000399489 DLGAP3O95886 979 aa5.94□□□□□ -1.46
HMGB1-204ENST00000399489 SERPINB4P48594 390 aa5.94□□□□□ -1.46
HMGB1-204ENST00000399489 PTPN12Q05209 780 aaKnown RBP5.94□□□□□ -1.46
HMGB1-204ENST00000399489 ZAR1Q86SH2 424 aa5.94□□□□□ -1.46
HMGB1-204ENST00000399489 VSIG10LQ86VR7 867 aa5.94□□□□□ -1.46
HMGB1-204ENST00000399489 EZH1Q92800 747 aaPredicted RBP5.94□□□□□ -1.46
HMGB1-204ENST00000399489 PRKAG2Q9UGJ0 569 aa5.94□□□□□ -1.46
HMGB1-204ENST00000399489 B3GALT4O96024 378 aa5.94□□□□□ -1.46
HMGB1-204ENST00000399489 VAMP1P23763 118 aa5.94□□□□□ -1.46
HMGB1-204ENST00000399489 HOXA10P31260 410 aaPredicted RBP5.93□□□□□ -1.46
HMGB1-204ENST00000399489 ASPAP45381 313 aa5.93□□□□□ -1.46
HMGB1-204ENST00000399489 RPS26P11Q5JNZ5 115 aaPredicted RBP5.93□□□□□ -1.46
HMGB1-204ENST00000399489 ZNF576Q9H609 170 aa5.93□□□□□ -1.46
HMGB1-204ENST00000399489 NPHS2Q9NP85 383 aa5.93□□□□□ -1.46
HMGB1-204ENST00000399489 BSDC1Q9NW68 430 aaPredicted RBP5.93□□□□□ -1.46
HMGB1-204ENST00000399489 ACTL7BQ9Y614 415 aa5.93□□□□□ -1.46
HMGB1-204ENST00000399489 ANKRD62A6NC57 917 aa5.92□□□□□ -1.46
HMGB1-204ENST00000399489 NFICP08651 508 aa5.92□□□□□ -1.46
HMGB1-204ENST00000399489 ITPKAP23677 461 aa5.92□□□□□ -1.46
HMGB1-204ENST00000399489 USPL1Q5W0Q7 1092 aa5.92□□□□□ -1.46
HMGB1-204ENST00000399489 CERS3Q8IU89 383 aa5.92□□□□□ -1.46
HMGB1-204ENST00000399489 TP53INP2Q8IXH6 220 aa5.92□□□□□ -1.46
HMGB1-204ENST00000399489 UBE2Q2Q8WVN8 375 aa5.92□□□□□ -1.46
HMGB1-204ENST00000399489 DMRTB1Q96MA1 342 aa5.92□□□□□ -1.46
HMGB1-204ENST00000399489 FAM129BQ96TA1 746 aa5.92□□□□□ -1.46
HMGB1-204ENST00000399489 NRSN2Q9GZP1 204 aa5.92□□□□□ -1.46
HMGB1-204ENST00000399489 SLFN14P0C7P3 912 aa5.91□□□□□ -1.46
HMGB1-204ENST00000399489 ORC1Q13415 861 aa5.91□□□□□ -1.46
HMGB1-204ENST00000399489 SF3A1Q15459 793 aaKnown RBP5.91□□□□□ -1.46
HMGB1-204ENST00000399489 CCDC74AQ96AQ1 378 aa5.91□□□□□ -1.46
HMGB1-204ENST00000399489 HIRIP3Q9BW71 556 aaPredicted RBP5.91□□□□□ -1.46
HMGB1-204ENST00000399489 ARID4BQ4LE39 1312 aaPredicted RBP5.91□□□□□ -1.46
HMGB1-204ENST00000399489 AOC2O75106 756 aa5.91□□□□□ -1.46
HMGB1-204ENST00000399489 ADAMTS4O75173 837 aa5.91□□□□□ -1.46
HMGB1-204ENST00000399489 PRNPP04156 253 aa5.91□□□□□ -1.46
HMGB1-204ENST00000399489 ARHGAP4P98171 946 aa5.91□□□□□ -1.46
HMGB1-204ENST00000399489 MSMPQ1L6U9 139 aa5.91□□□□□ -1.46
HMGB1-204ENST00000399489 NAALADL2Q58DX5 795 aa5.91□□□□□ -1.46
HMGB1-204ENST00000399489 PRPF40BQ6NWY9 871 aaKnown RBP5.91□□□□□ -1.46
HMGB1-204ENST00000399489 NPAS4Q8IUM7 802 aa5.91□□□□□ -1.46
HMGB1-204ENST00000399489 FAM9AQ8IZU1 332 aaPredicted RBP5.91□□□□□ -1.46
HMGB1-204ENST00000399489 AGBL5Q8NDL9 886 aa5.91□□□□□ -1.46
HMGB1-204ENST00000399489 NIF3L1Q9GZT8 377 aa5.91□□□□□ -1.46
HMGB1-204ENST00000399489 PIDD1Q9HB75 910 aa5.91□□□□□ -1.46
HMGB1-204ENST00000399489 CCDC39Q9UFE4 941 aa5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms